| #------------------------------------------------------------- |
| # |
| # Licensed to the Apache Software Foundation (ASF) under one |
| # or more contributor license agreements. See the NOTICE file |
| # distributed with this work for additional information |
| # regarding copyright ownership. The ASF licenses this file |
| # to you under the Apache License, Version 2.0 (the |
| # "License"); you may not use this file except in compliance |
| # with the License. You may obtain a copy of the License at |
| # |
| # http://www.apache.org/licenses/LICENSE-2.0 |
| # |
| # Unless required by applicable law or agreed to in writing, |
| # software distributed under the License is distributed on an |
| # "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY |
| # KIND, either express or implied. See the License for the |
| # specific language governing permissions and limitations |
| # under the License. |
| # |
| #------------------------------------------------------------- |
| |
| |
| source("scripts/builtin/stepGLM.dml") as stepGLM; |
| |
| N = 1000; |
| P = 10; |
| X = rand(rows=N, cols=P, min=-1.0, max=1.0, pdf="uniform", seed=123); |
| |
| beta_true = matrix(0, rows=P, cols=1); |
| beta_true[2,1] = 3.5; |
| beta_true[5,1] = -2.0; |
| beta_true[8,1] = 1.5; |
| |
| Z = X %*% beta_true; |
| P_y = 1.0 / (1.0 + exp(-Z)); |
| Y = (rand(rows=N, cols=1, min=0.0, max=1.0, seed=456) < P_y) * 1.0; |
| |
| [AIC, B, S] = stepGLM::m_stepGLM(X=X, Y=Y, link=2, yneg=0.0, icpt=0, tol=1e-6, disp=0.0, moi=200, mii=0, thr=0.01); |
| |
| |
| beta_est = matrix(0, rows=P, cols=1); |
| for (i in 1:nrow(B)) { |
| idx = as.scalar(S[1, i]); |
| beta_est[idx, 1] = B[i, 1]; |
| } |
| |
| # if beta_est and beta_true have the same sparsity |
| if (nrow(B) != 3 | sum(beta_est != 0 & beta_true == 0) > 0 | sum(beta_est == 0 & beta_true != 0) > 0) { |
| stop("Test failed: Unexpected non-zero element in beta_est"); |
| } |
| |
| # if maximal element divergence remains below epsilon bound |
| epsilon = 0.5; |
| if (max(abs(beta_est - beta_true)) > epsilon) { |
| stop("Test failed: Element divergence exceeds epsilon=" + epsilon +" tolerance."); |
| } |
| |
| |