blob: 9c473d827f30050ae0b68a20a4c41b72d9deb824 [file] [log] [blame]
#-------------------------------------------------------------
#
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not use this file except in compliance
# with the License. You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing,
# software distributed under the License is distributed on an
# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
# KIND, either express or implied. See the License for the
# specific language governing permissions and limitations
# under the License.
#
# Returns Euclidian distance matrix (distances between N n-dimensional points)
m_dist = function(Matrix[Double] X) return (Matrix[Double] Y) {
G = X %*% t(X);
I = matrix(1, rows = nrow(G), cols = ncol(G));
Y = -2 * (G) + t(I %*% diag(diag(G))) + t(diag(diag(G)) %*% I);
Y = sqrt(Y);
Y = replace(target = Y, pattern=0/0, replacement = 0);
}