| /* |
| * Licensed to the Apache Software Foundation (ASF) under one |
| * or more contributor license agreements. See the NOTICE file |
| * distributed with this work for additional information |
| * regarding copyright ownership. The ASF licenses this file |
| * to you under the Apache License, Version 2.0 (the |
| * "License"); you may not use this file except in compliance |
| * with the License. You may obtain a copy of the License at |
| * |
| * http://www.apache.org/licenses/LICENSE-2.0 |
| * |
| * Unless required by applicable law or agreed to in writing, |
| * software distributed under the License is distributed on an |
| * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY |
| * KIND, either express or implied. See the License for the |
| * specific language governing permissions and limitations |
| * under the License. |
| */ |
| |
| package org.apache.sysds.runtime.compress.colgroup; |
| |
| import java.io.DataInput; |
| import java.io.DataOutput; |
| import java.io.IOException; |
| import java.util.Arrays; |
| |
| import org.apache.commons.lang.NotImplementedException; |
| import org.apache.sysds.runtime.DMLRuntimeException; |
| import org.apache.sysds.runtime.compress.colgroup.dictionary.ADictionary; |
| import org.apache.sysds.runtime.compress.colgroup.dictionary.DictionaryFactory; |
| import org.apache.sysds.runtime.compress.colgroup.dictionary.MatrixBlockDictionary; |
| import org.apache.sysds.runtime.compress.colgroup.indexes.ColIndexFactory; |
| import org.apache.sysds.runtime.compress.colgroup.indexes.IColIndex; |
| import org.apache.sysds.runtime.compress.colgroup.mapping.AMapToData; |
| import org.apache.sysds.runtime.compress.colgroup.mapping.MapToFactory; |
| import org.apache.sysds.runtime.compress.colgroup.scheme.ICLAScheme; |
| import org.apache.sysds.runtime.compress.cost.ComputationCostEstimator; |
| import org.apache.sysds.runtime.compress.estim.CompressedSizeInfoColGroup; |
| import org.apache.sysds.runtime.compress.estim.EstimationFactors; |
| import org.apache.sysds.runtime.compress.estim.encoding.EncodingFactory; |
| import org.apache.sysds.runtime.compress.estim.encoding.IEncode; |
| import org.apache.sysds.runtime.functionobjects.Builtin; |
| import org.apache.sysds.runtime.functionobjects.Divide; |
| import org.apache.sysds.runtime.functionobjects.Minus; |
| import org.apache.sysds.runtime.functionobjects.Multiply; |
| import org.apache.sysds.runtime.functionobjects.Plus; |
| import org.apache.sysds.runtime.instructions.cp.CM_COV_Object; |
| import org.apache.sysds.runtime.matrix.data.MatrixBlock; |
| import org.apache.sysds.runtime.matrix.operators.BinaryOperator; |
| import org.apache.sysds.runtime.matrix.operators.CMOperator; |
| import org.apache.sysds.runtime.matrix.operators.ScalarOperator; |
| import org.apache.sysds.runtime.matrix.operators.UnaryOperator; |
| |
| /** |
| * Class to encapsulate information about a column group that is encoded with dense dictionary encoding (DDC). |
| */ |
| public class ColGroupDDCFOR extends AMorphingMMColGroup implements IFrameOfReferenceGroup { |
| private static final long serialVersionUID = -5769772089913918987L; |
| |
| /** Pointers to row indexes in the dictionary */ |
| protected final AMapToData _data; |
| |
| /** Reference values in this column group */ |
| protected final double[] _reference; |
| |
| private ColGroupDDCFOR(IColIndex colIndexes, ADictionary dict, double[] reference, AMapToData data, |
| int[] cachedCounts) { |
| super(colIndexes, dict, cachedCounts); |
| _data = data; |
| _reference = reference; |
| } |
| |
| public static AColGroup create(IColIndex colIndexes, ADictionary dict, AMapToData data, int[] cachedCounts, |
| double[] reference) { |
| final boolean allZero = ColGroupUtils.allZero(reference); |
| if(dict == null && allZero) |
| return new ColGroupEmpty(colIndexes); |
| else if(dict == null) |
| return ColGroupConst.create(colIndexes, reference); |
| else if(data.getUnique() == 1) |
| return ColGroupConst.create(colIndexes, |
| dict.binOpRight(new BinaryOperator(Plus.getPlusFnObject()), reference)); |
| else if(allZero) |
| return ColGroupDDC.create(colIndexes, dict, data, cachedCounts); |
| else |
| return new ColGroupDDCFOR(colIndexes, dict, reference, data, cachedCounts); |
| } |
| |
| public static AColGroup sparsifyFOR(ColGroupDDC g) { |
| // It is assumed whoever call this does not use an empty Dictionary in g. |
| final int nCol = g.getColIndices().size(); |
| final MatrixBlockDictionary mbd = g._dict.getMBDict(nCol); |
| if(mbd != null) { |
| |
| final MatrixBlock mb = mbd.getMatrixBlock(); |
| |
| final double[] ref = ColGroupUtils.extractMostCommonValueInColumns(mb); |
| if(ref != null) { |
| MatrixBlockDictionary mDict = mbd.binOpRight(new BinaryOperator(Minus.getMinusFnObject()), ref); |
| return create(g.getColIndices(), mDict, g._data, g.getCachedCounts(), ref); |
| } |
| else |
| return g; |
| } |
| else { |
| throw new NotImplementedException("The dictionary was empty... highly unlikely"); |
| } |
| } |
| |
| public CompressionType getCompType() { |
| return CompressionType.DDCFOR; |
| } |
| |
| @Override |
| public double getIdx(int r, int colIdx) { |
| return _dict.getValue(_data.getIndex(r), colIdx, _colIndexes.size()) + _reference[colIdx]; |
| } |
| |
| @Override |
| protected void computeRowSums(double[] c, int rl, int ru, double[] preAgg) { |
| for(int rix = rl; rix < ru; rix++) |
| c[rix] += preAgg[_data.getIndex(rix)]; |
| } |
| |
| @Override |
| protected void computeRowMxx(double[] c, Builtin builtin, int rl, int ru, double[] preAgg) { |
| for(int i = rl; i < ru; i++) |
| c[i] = builtin.execute(c[i], preAgg[_data.getIndex(i)]); |
| } |
| |
| @Override |
| public int[] getCounts(int[] counts) { |
| return _data.getCounts(counts); |
| } |
| |
| @Override |
| public ColGroupType getColGroupType() { |
| return ColGroupType.DDCFOR; |
| } |
| |
| @Override |
| public long estimateInMemorySize() { |
| long size = super.estimateInMemorySize(); |
| size += _data.getInMemorySize(); |
| size += 8 * _colIndexes.size(); |
| return size; |
| } |
| |
| @Override |
| public AColGroup scalarOperation(ScalarOperator op) { |
| final double[] newRef = new double[_reference.length]; |
| for(int i = 0; i < _reference.length; i++) |
| newRef[i] = op.executeScalar(_reference[i]); |
| if(op.fn instanceof Plus || op.fn instanceof Minus) |
| return create(_colIndexes, _dict, _data, getCachedCounts(), newRef); |
| else if(op.fn instanceof Multiply || op.fn instanceof Divide) { |
| final ADictionary newDict = _dict.applyScalarOp(op); |
| return create(_colIndexes, newDict, _data, getCachedCounts(), newRef); |
| } |
| else { |
| final ADictionary newDict = _dict.applyScalarOpWithReference(op, _reference, newRef); |
| return create(_colIndexes, newDict, _data, getCachedCounts(), newRef); |
| } |
| } |
| |
| @Override |
| public AColGroup unaryOperation(UnaryOperator op) { |
| final double[] newRef = ColGroupUtils.unaryOperator(op, _reference); |
| final ADictionary newDict = _dict.applyUnaryOpWithReference(op, _reference, newRef); |
| return create(_colIndexes, newDict, _data, getCachedCounts(), newRef); |
| } |
| |
| @Override |
| public AColGroup binaryRowOpLeft(BinaryOperator op, double[] v, boolean isRowSafe) { |
| final double[] newRef = new double[_reference.length]; |
| for(int i = 0; i < _reference.length; i++) |
| newRef[i] = op.fn.execute(v[_colIndexes.get(i)], _reference[i]); |
| |
| if(op.fn instanceof Plus || op.fn instanceof Minus) // only edit reference |
| return create(_colIndexes, _dict, _data, getCachedCounts(), newRef); |
| else if(op.fn instanceof Multiply || op.fn instanceof Divide) { |
| // possible to simply process on dict and keep reference |
| final ADictionary newDict = _dict.binOpLeft(op, v, _colIndexes); |
| return create(_colIndexes, newDict, _data, getCachedCounts(), newRef); |
| } |
| else { // have to apply reference while processing |
| final ADictionary newDict = _dict.binOpLeftWithReference(op, v, _colIndexes, _reference, newRef); |
| return create(_colIndexes, newDict, _data, getCachedCounts(), newRef); |
| } |
| } |
| |
| @Override |
| public AColGroup binaryRowOpRight(BinaryOperator op, double[] v, boolean isRowSafe) { |
| final double[] newRef = new double[_reference.length]; |
| for(int i = 0; i < _reference.length; i++) |
| newRef[i] = op.fn.execute(_reference[i], v[_colIndexes.get(i)]); |
| |
| if(op.fn instanceof Plus || op.fn instanceof Minus)// only edit reference |
| return create(_colIndexes, _dict, _data, getCachedCounts(), newRef); |
| else if(op.fn instanceof Multiply || op.fn instanceof Divide) { |
| // possible to simply process on dict and keep reference |
| final ADictionary newDict = _dict.binOpRight(op, v, _colIndexes); |
| return create(_colIndexes, newDict, _data, getCachedCounts(), newRef); |
| } |
| else { // have to apply reference while processing |
| final ADictionary newDict = _dict.binOpRightWithReference(op, v, _colIndexes, _reference, newRef); |
| return create(_colIndexes, newDict, _data, getCachedCounts(), newRef); |
| } |
| } |
| |
| @Override |
| public void write(DataOutput out) throws IOException { |
| super.write(out); |
| _data.write(out); |
| for(double d : _reference) |
| out.writeDouble(d); |
| } |
| |
| public static ColGroupDDCFOR read(DataInput in) throws IOException { |
| IColIndex cols = ColIndexFactory.read(in); |
| ADictionary dict = DictionaryFactory.read(in); |
| AMapToData data = MapToFactory.readIn(in); |
| double[] ref = ColGroupIO.readDoubleArray(cols.size(), in); |
| return new ColGroupDDCFOR(cols, dict, ref, data, null); |
| } |
| |
| @Override |
| public long getExactSizeOnDisk() { |
| long ret = super.getExactSizeOnDisk(); |
| ret += _data.getExactSizeOnDisk(); |
| ret += 8 * _colIndexes.size(); // reference values. |
| return ret; |
| } |
| |
| @Override |
| public double getCost(ComputationCostEstimator e, int nRows) { |
| final int nVals = getNumValues(); |
| final int nCols = getNumCols(); |
| return e.getCost(nRows, nRows, nCols, nVals, _dict.getSparsity()); |
| } |
| |
| @Override |
| public AColGroup replace(double pattern, double replace) { |
| final ADictionary newDict = _dict.replaceWithReference(pattern, replace, _reference); |
| boolean patternInReference = false; |
| for(double d : _reference) |
| if(pattern == d) { |
| patternInReference = true; |
| break; |
| } |
| if(patternInReference) { |
| double[] nRef = new double[_reference.length]; |
| for(int i = 0; i < _reference.length; i++) |
| if(pattern == _reference[i]) |
| nRef[i] = replace; |
| else |
| nRef[i] = _reference[i]; |
| |
| return create(_colIndexes, newDict, _data, getCachedCounts(), nRef); |
| } |
| else |
| return create(_colIndexes, newDict, _data, getCachedCounts(), _reference); |
| |
| } |
| |
| @Override |
| protected double computeMxx(double c, Builtin builtin) { |
| return _dict.aggregateWithReference(c, builtin, _reference, false); |
| } |
| |
| @Override |
| protected void computeColMxx(double[] c, Builtin builtin) { |
| _dict.aggregateColsWithReference(c, builtin, _colIndexes, _reference, false); |
| } |
| |
| @Override |
| protected void computeSum(double[] c, int nRows) { |
| // trick, use normal sum |
| super.computeSum(c, nRows); |
| // and add all sum of reference multiplied with nrows. |
| final double refSum = ColGroupUtils.refSum(_reference); |
| c[0] += refSum * nRows; |
| } |
| |
| @Override |
| public void computeColSums(double[] c, int nRows) { |
| // trick, use normal sum |
| super.computeColSums(c, nRows); |
| // and add reference multiplied with number of rows. |
| for(int i = 0; i < _colIndexes.size(); i++) |
| c[_colIndexes.get(i)] += _reference[i] * nRows; |
| } |
| |
| @Override |
| protected void computeSumSq(double[] c, int nRows) { |
| c[0] += _dict.sumSqWithReference(getCounts(), _reference); |
| } |
| |
| @Override |
| protected void computeColSumsSq(double[] c, int nRows) { |
| _dict.colSumSqWithReference(c, getCounts(), _colIndexes, _reference); |
| } |
| |
| @Override |
| protected double[] preAggSumRows() { |
| return _dict.sumAllRowsToDoubleWithReference(_reference); |
| } |
| |
| @Override |
| protected double[] preAggSumSqRows() { |
| return _dict.sumAllRowsToDoubleSqWithReference(_reference); |
| } |
| |
| @Override |
| protected double[] preAggProductRows() { |
| return _dict.productAllRowsToDoubleWithReference(_reference); |
| } |
| |
| @Override |
| protected double[] preAggBuiltinRows(Builtin builtin) { |
| return _dict.aggregateRowsWithReference(builtin, _reference); |
| } |
| |
| @Override |
| protected void computeProduct(double[] c, int nRows) { |
| _dict.productWithReference(c, getCounts(), _reference, 0); |
| } |
| |
| @Override |
| protected void computeRowProduct(double[] c, int rl, int ru, double[] preAgg) { |
| for(int rix = rl; rix < ru; rix++) |
| c[rix] *= preAgg[_data.getIndex(rix)]; |
| } |
| |
| @Override |
| protected void computeColProduct(double[] c, int nRows) { |
| _dict.colProductWithReference(c, getCounts(), _colIndexes, _reference); |
| } |
| |
| @Override |
| protected AColGroup sliceMultiColumns(int idStart, int idEnd, IColIndex outputCols) { |
| ADictionary retDict = _dict.sliceOutColumnRange(idStart, idEnd, _colIndexes.size()); |
| final double[] newDef = new double[idEnd - idStart]; |
| for(int i = idStart, j = 0; i < idEnd; i++, j++) |
| newDef[j] = _reference[i]; |
| return create(outputCols, retDict, _data, getCounts(), newDef); |
| } |
| |
| @Override |
| protected AColGroup sliceSingleColumn(int idx) { |
| final IColIndex retIndexes = ColIndexFactory.create(1); |
| if(_colIndexes.size() == 1) // early abort, only single column already. |
| return create(retIndexes, _dict, _data, getCounts(), _reference); |
| final double[] newDef = new double[] {_reference[idx]}; |
| final ADictionary retDict = _dict.sliceOutColumnRange(idx, idx + 1, _colIndexes.size()); |
| return create(retIndexes, retDict, _data, getCounts(), newDef); |
| |
| } |
| |
| @Override |
| public boolean containsValue(double pattern) { |
| |
| if(Double.isNaN(pattern) || Double.isInfinite(pattern)) |
| return ColGroupUtils.containsInfOrNan(pattern, _reference) || _dict.containsValue(pattern); |
| else |
| return _dict.containsValueWithReference(pattern, _reference); |
| } |
| |
| @Override |
| public long getNumberNonZeros(int nRows) { |
| // to be safe just assume the worst fully dense for DDCFOR |
| return (long) _colIndexes.size() * nRows; |
| } |
| |
| @Override |
| public AColGroup extractCommon(double[] constV) { |
| for(int i = 0; i < _colIndexes.size(); i++) |
| constV[_colIndexes.get(i)] += _reference[i]; |
| return ColGroupDDC.create(_colIndexes, _dict, _data, getCounts()); |
| } |
| |
| @Override |
| public AColGroup rexpandCols(int max, boolean ignore, boolean cast, int nRows) { |
| final int def = (int) _reference[0]; |
| ADictionary d = _dict.rexpandColsWithReference(max, ignore, cast, def); |
| |
| if(d == null) { |
| if(def <= 0 || def > max) |
| return ColGroupEmpty.create(max); |
| else { |
| double[] retDef = new double[max]; |
| retDef[((int) def) - 1] = 1; |
| return ColGroupConst.create(retDef); |
| } |
| } |
| else { |
| IColIndex outCols = ColIndexFactory.create(max); |
| if(def <= 0) { |
| if(ignore) |
| return ColGroupDDC.create(outCols, d, _data, getCachedCounts()); |
| else |
| throw new DMLRuntimeException("Invalid content of zero in rexpand"); |
| } |
| else if(def > max) |
| return ColGroupDDC.create(outCols, d, _data, getCachedCounts()); |
| else { |
| double[] retDef = new double[max]; |
| retDef[((int) def) - 1] = 1; |
| return ColGroupDDCFOR.create(outCols, d, _data, getCachedCounts(), retDef); |
| } |
| } |
| |
| } |
| |
| @Override |
| public CM_COV_Object centralMoment(CMOperator op, int nRows) { |
| // should be guaranteed to be one column therefore only one reference value. |
| CM_COV_Object ret = _dict.centralMomentWithReference(op.fn, getCounts(), _reference[0], nRows); |
| return ret; |
| } |
| |
| @Override |
| public double[] getCommon() { |
| return _reference; |
| } |
| |
| @Override |
| protected AColGroup allocateRightMultiplicationCommon(double[] common, IColIndex colIndexes, ADictionary preAgg) { |
| return create(colIndexes, preAgg, _data, getCachedCounts(), common); |
| } |
| |
| @Override |
| public AColGroup sliceRows(int rl, int ru) { |
| AMapToData sliceMap = _data.slice(rl, ru); |
| return new ColGroupDDCFOR(_colIndexes, _dict, _reference, sliceMap, null); |
| } |
| |
| @Override |
| protected AColGroup copyAndSet(IColIndex colIndexes, ADictionary newDictionary) { |
| return create(colIndexes, newDictionary, _data, getCachedCounts(), _reference); |
| } |
| |
| @Override |
| public AColGroup append(AColGroup g) { |
| if(g instanceof ColGroupDDCFOR && g.getColIndices().equals(_colIndexes)) { |
| ColGroupDDCFOR gDDC = (ColGroupDDCFOR) g; |
| if(Arrays.equals(_reference, gDDC._reference) && gDDC._dict.equals(_dict)) { |
| AMapToData nd = _data.append(gDDC._data); |
| return create(_colIndexes, _dict, nd, null, _reference); |
| } |
| } |
| return null; |
| } |
| |
| @Override |
| public AColGroup appendNInternal(AColGroup[] g) { |
| return null; |
| } |
| |
| @Override |
| public ICLAScheme getCompressionScheme() { |
| return null; |
| } |
| |
| @Override |
| public AColGroup recompress() { |
| return this; |
| } |
| |
| @Override |
| public CompressedSizeInfoColGroup getCompressionInfo(int nRow) { |
| IEncode enc = getEncoding(); |
| EstimationFactors ef = new EstimationFactors(getNumValues(), _data.size(), _data.size(), _dict.getSparsity()); |
| return new CompressedSizeInfoColGroup(_colIndexes, ef, estimateInMemorySize(), getCompType(), enc); |
| } |
| |
| @Override |
| public IEncode getEncoding() { |
| return EncodingFactory.create(_data); |
| } |
| |
| @Override |
| public boolean sameIndexStructure(AColGroupCompressed that) { |
| return that instanceof ColGroupDDCFOR && ((ColGroupDDCFOR) that)._data == _data; |
| } |
| |
| @Override |
| protected AColGroup fixColIndexes(IColIndex newColIndex, int[] reordering) { |
| throw new NotImplementedException(); |
| } |
| |
| @Override |
| public String toString() { |
| StringBuilder sb = new StringBuilder(); |
| sb.append(super.toString()); |
| sb.append(String.format("\n%15s ", "Data: ")); |
| sb.append(_data); |
| sb.append(String.format("\n%15s", "Reference:")); |
| sb.append(Arrays.toString(_reference)); |
| return sb.toString(); |
| } |
| } |