| |
| |
| <!DOCTYPE html> |
| <html class="writer-html5" lang="en" > |
| <head> |
| <meta charset="utf-8"> |
| |
| <meta name="viewport" content="width=device-width, initial-scale=1.0"> |
| |
| <title>Federated Environment — SystemDS 2.0.0 documentation</title> |
| |
| |
| |
| <link rel="stylesheet" href="../static/css/theme.css" type="text/css" /> |
| <link rel="stylesheet" href="../static/pygments.css" type="text/css" /> |
| |
| |
| |
| |
| |
| |
| |
| <!--[if lt IE 9]> |
| <script src="../static/js/html5shiv.min.js"></script> |
| <![endif]--> |
| |
| |
| <script type="text/javascript" id="documentation_options" data-url_root="../" src="../static/documentation_options.js"></script> |
| <script src="../static/jquery.js"></script> |
| <script src="../static/underscore.js"></script> |
| <script src="../static/doctools.js"></script> |
| <script src="../static/language_data.js"></script> |
| |
| <script type="text/javascript" src="../static/js/theme.js"></script> |
| |
| |
| <link rel="index" title="Index" href="../genindex.html" /> |
| <link rel="search" title="Search" href="../search.html" /> |
| <link rel="next" title="Built-in Algorithms" href="algorithms_basics.html" /> |
| <link rel="prev" title="QuickStart" href="../getting_started/simple_examples.html" /> |
| </head> |
| |
| <body class="wy-body-for-nav"> |
| |
| |
| <div class="wy-grid-for-nav"> |
| |
| <nav data-toggle="wy-nav-shift" class="wy-nav-side"> |
| <div class="wy-side-scroll"> |
| <div class="wy-side-nav-search" > |
| |
| |
| |
| <a href="../index.html" class="icon icon-home" alt="Documentation Home"> SystemDS |
| |
| |
| |
| </a> |
| |
| |
| |
| |
| |
| |
| |
| <div role="search"> |
| <form id="rtd-search-form" class="wy-form" action="../search.html" method="get"> |
| <input type="text" name="q" placeholder="Search docs" /> |
| <input type="hidden" name="check_keywords" value="yes" /> |
| <input type="hidden" name="area" value="default" /> |
| </form> |
| </div> |
| |
| |
| </div> |
| |
| |
| <div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="main navigation"> |
| |
| |
| |
| |
| |
| |
| <p class="caption"><span class="caption-text">Getting Started:</span></p> |
| <ul> |
| <li class="toctree-l1"><a class="reference internal" href="../getting_started/install.html">Install SystemDS</a></li> |
| <li class="toctree-l1"><a class="reference internal" href="../getting_started/simple_examples.html">QuickStart</a></li> |
| </ul> |
| <p class="caption"><span class="caption-text">Guides</span></p> |
| <ul class="current"> |
| <li class="toctree-l1 current"><a class="current reference internal" href="#">Federated Environment</a><ul> |
| <li class="toctree-l2"><a class="reference internal" href="#start-federated-worker">Start Federated worker</a></li> |
| <li class="toctree-l2"><a class="reference internal" href="#simple-aggregation-example">Simple Aggregation Example</a></li> |
| <li class="toctree-l2"><a class="reference internal" href="#multiple-federated-environments">Multiple Federated Environments</a></li> |
| </ul> |
| </li> |
| <li class="toctree-l1"><a class="reference internal" href="algorithms_basics.html">Built-in Algorithms</a></li> |
| </ul> |
| <p class="caption"><span class="caption-text">API</span></p> |
| <ul> |
| <li class="toctree-l1"><a class="reference internal" href="../api/operator/algorithms.html">Algorithms</a></li> |
| <li class="toctree-l1"><a class="reference internal" href="../api/context/systemds_context.html">SystemDSContext</a></li> |
| <li class="toctree-l1"><a class="reference internal" href="../api/matrix/matrix.html">Matrix</a></li> |
| <li class="toctree-l1"><a class="reference internal" href="../api/matrix/federated.html">Federated</a></li> |
| <li class="toctree-l1"><a class="reference internal" href="../api/operator/operation_node.html">Operation Node</a></li> |
| </ul> |
| <p class="caption"><span class="caption-text">Internals API</span></p> |
| <ul> |
| <li class="toctree-l1"><a class="reference internal" href="../api/script_building/dag.html">Dag</a></li> |
| <li class="toctree-l1"><a class="reference internal" href="../api/script_building/script.html">Script</a></li> |
| <li class="toctree-l1"><a class="reference internal" href="../api/utils/converters.html">Converters</a></li> |
| <li class="toctree-l1"><a class="reference internal" href="../api/utils/helpers.html">Helpers</a></li> |
| </ul> |
| |
| |
| |
| </div> |
| |
| </div> |
| </nav> |
| |
| <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"> |
| |
| |
| <nav class="wy-nav-top" aria-label="top navigation"> |
| |
| <i data-toggle="wy-nav-top" class="fa fa-bars"></i> |
| <a href="../index.html">SystemDS</a> |
| |
| </nav> |
| |
| |
| <div class="wy-nav-content"> |
| |
| <div class="rst-content"> |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| <div role="navigation" aria-label="breadcrumbs navigation"> |
| |
| <ul class="wy-breadcrumbs"> |
| |
| <li><a href="../index.html" class="icon icon-home"></a> »</li> |
| |
| <li>Federated Environment</li> |
| |
| |
| <li class="wy-breadcrumbs-aside"> |
| |
| |
| <a href="../sources/guide/federated.rst.txt" rel="nofollow"> View page source</a> |
| |
| |
| </li> |
| |
| </ul> |
| |
| |
| <hr/> |
| </div> |
| <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article"> |
| <div itemprop="articleBody"> |
| |
| <div class="section" id="federated-environment"> |
| <h1>Federated Environment<a class="headerlink" href="#federated-environment" title="Permalink to this headline">¶</a></h1> |
| <p>The python SystemDS supports federated execution. |
| To enable this, each of the federated environments have to have |
| a running federated worker.</p> |
| <div class="section" id="start-federated-worker"> |
| <h2>Start Federated worker<a class="headerlink" href="#start-federated-worker" title="Permalink to this headline">¶</a></h2> |
| <p>To start a federated worker, you first have to setup your environment variables. |
| A simple guide to do this is in the SystemDS <a class="reference external" href="https://github.com/apache/systemds/tree/master/bin/">Repository</a>.</p> |
| <p>If that is setup correctly simply start a worker using the following command. |
| Here the <code class="docutils literal notranslate"><span class="pre">8001</span></code> refer to the port used by the worker.:</p> |
| <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">systemds</span> <span class="n">WORKER</span> <span class="mi">8001</span> |
| </pre></div> |
| </div> |
| </div> |
| <div class="section" id="simple-aggregation-example"> |
| <h2>Simple Aggregation Example<a class="headerlink" href="#simple-aggregation-example" title="Permalink to this headline">¶</a></h2> |
| <p>In this example we use a single federated worker, and aggregate the sum of its data.</p> |
| <p>First we need to create some data for our federated worker to use. |
| In this example we simply use Numpy to create a <code class="docutils literal notranslate"><span class="pre">test.csv</span></code> file:</p> |
| <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="c1"># Import numpy</span> |
| <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span> |
| <span class="n">a</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([[</span><span class="mi">1</span><span class="p">,</span><span class="mi">2</span><span class="p">,</span><span class="mi">3</span><span class="p">],</span> <span class="p">[</span><span class="mi">4</span><span class="p">,</span><span class="mi">5</span><span class="p">,</span><span class="mi">6</span><span class="p">],</span> <span class="p">[</span><span class="mi">7</span><span class="p">,</span><span class="mi">8</span><span class="p">,</span><span class="mi">9</span><span class="p">]])</span> |
| <span class="n">np</span><span class="o">.</span><span class="n">savetxt</span><span class="p">(</span><span class="s2">"temp/test.csv"</span><span class="p">,</span> <span class="n">a</span><span class="p">,</span> <span class="n">delimiter</span><span class="o">=</span><span class="s2">","</span><span class="p">)</span> |
| </pre></div> |
| </div> |
| <p>Currently we also require a metadata file for the federated worker. |
| This should be located next to the <code class="docutils literal notranslate"><span class="pre">test.csv</span></code> file called <code class="docutils literal notranslate"><span class="pre">test.csv.mtd</span></code>. |
| To make this simply execute the following:</p> |
| <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">echo</span> <span class="s1">'{ "format":"csv", "header":false, "rows":3, "cols":3 }'</span> <span class="o">></span> <span class="n">temp</span><span class="o">/</span><span class="n">test</span><span class="o">.</span><span class="n">csv</span><span class="o">.</span><span class="n">mtd</span> |
| </pre></div> |
| </div> |
| <p>After creating our data we the federated worker becomes able to execute federated instructions. |
| The aggregated sum using federated instructions in python SystemDS is done as follows:</p> |
| <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="c1"># Import numpy and SystemDS federated</span> |
| <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span> |
| <span class="kn">from</span> <span class="nn">systemds.matrix</span> <span class="kn">import</span> <span class="n">Federated</span> |
| <span class="kn">from</span> <span class="nn">systemds.context</span> <span class="kn">import</span> <span class="n">SystemDSContext</span> |
| |
| <span class="c1"># Create a federated matrix</span> |
| <span class="c1">## Indicate the dimensions of the data:</span> |
| <span class="c1">### Here the first list in the tuple is the top left Coordinate,</span> |
| <span class="c1">### and the second the bottom left coordinate.</span> |
| <span class="c1">### It is ordered as [col,row].</span> |
| <span class="n">dims</span> <span class="o">=</span> <span class="p">([</span><span class="mi">0</span><span class="p">,</span><span class="mi">0</span><span class="p">],</span> <span class="p">[</span><span class="mi">3</span><span class="p">,</span><span class="mi">3</span><span class="p">])</span> |
| |
| <span class="c1">## Specify the address + file path from worker:</span> |
| <span class="n">address</span> <span class="o">=</span> <span class="s2">"localhost:8001/temp/test.csv"</span> |
| |
| <span class="k">with</span> <span class="n">SystemDSContext</span><span class="p">()</span> <span class="k">as</span> <span class="n">sds</span><span class="p">:</span> |
| <span class="n">fed_a</span> <span class="o">=</span> <span class="n">Federated</span><span class="p">(</span><span class="n">sds</span><span class="p">,</span> <span class="p">[</span><span class="n">address</span><span class="p">],</span> <span class="p">[</span><span class="n">dims</span><span class="p">])</span> |
| <span class="c1"># Sum the federated matrix and call compute to execute</span> |
| <span class="nb">print</span><span class="p">(</span><span class="n">fed_a</span><span class="o">.</span><span class="n">sum</span><span class="p">()</span><span class="o">.</span><span class="n">compute</span><span class="p">())</span> |
| <span class="c1"># Result should be 45.</span> |
| </pre></div> |
| </div> |
| </div> |
| <div class="section" id="multiple-federated-environments"> |
| <h2>Multiple Federated Environments<a class="headerlink" href="#multiple-federated-environments" title="Permalink to this headline">¶</a></h2> |
| <p>In this example we multiply matrices that are located in different federated environments.</p> |
| <p>Using the data created from the last example we can simulate |
| multiple federated workers by starting multiple ones on different ports. |
| Start with 3 different terminals, and run one federated environment in each.:</p> |
| <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">systemds</span> <span class="n">WORKER</span> <span class="mi">8001</span> |
| <span class="n">systemds</span> <span class="n">WORKER</span> <span class="mi">8002</span> |
| <span class="n">systemds</span> <span class="n">WORKER</span> <span class="mi">8003</span> |
| </pre></div> |
| </div> |
| <p>Once all three workers are up and running we can leverage all three in the following example:</p> |
| <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="c1"># Import numpy and SystemDS federated</span> |
| <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span> |
| <span class="kn">from</span> <span class="nn">systemds.matrix</span> <span class="kn">import</span> <span class="n">Federated</span> |
| <span class="kn">from</span> <span class="nn">systemds.context</span> <span class="kn">import</span> <span class="n">SystemDSContext</span> |
| |
| <span class="n">addr1</span> <span class="o">=</span> <span class="s2">"localhost:8001/temp/test.csv"</span> |
| <span class="n">addr2</span> <span class="o">=</span> <span class="s2">"localhost:8002/temp/test.csv"</span> |
| <span class="n">addr3</span> <span class="o">=</span> <span class="s2">"localhost:8003/temp/test.csv"</span> |
| |
| <span class="c1"># Create a federated matrix using two federated environments</span> |
| <span class="c1"># Note that the two federated matrices are stacked on top of each other</span> |
| |
| <span class="k">with</span> <span class="n">SystemDSContext</span><span class="p">()</span> <span class="k">as</span> <span class="n">sds</span><span class="p">:</span> |
| <span class="n">fed_a</span> <span class="o">=</span> <span class="n">Federated</span><span class="p">(</span><span class="n">sds</span><span class="p">,</span> |
| <span class="p">[</span><span class="n">addr1</span><span class="p">,</span> <span class="n">addr2</span><span class="p">],</span> |
| <span class="p">[([</span><span class="mi">0</span><span class="p">,</span><span class="mi">0</span><span class="p">],</span> <span class="p">[</span><span class="mi">3</span><span class="p">,</span><span class="mi">3</span><span class="p">]),</span> <span class="p">([</span><span class="mi">0</span><span class="p">,</span><span class="mi">3</span><span class="p">],</span> <span class="p">[</span><span class="mi">3</span><span class="p">,</span><span class="mi">6</span><span class="p">])])</span> |
| |
| <span class="n">fed_b</span> <span class="o">=</span> <span class="n">Federated</span><span class="p">(</span><span class="n">sds</span><span class="p">,</span> |
| <span class="p">[</span><span class="n">addr1</span><span class="p">,</span> <span class="n">addr3</span><span class="p">],</span> |
| <span class="p">[([</span><span class="mi">0</span><span class="p">,</span><span class="mi">0</span><span class="p">],</span> <span class="p">[</span><span class="mi">3</span><span class="p">,</span><span class="mi">3</span><span class="p">]),</span> <span class="p">([</span><span class="mi">0</span><span class="p">,</span><span class="mi">3</span><span class="p">],</span> <span class="p">[</span><span class="mi">3</span><span class="p">,</span><span class="mi">6</span><span class="p">])])</span> |
| |
| <span class="c1"># Multiply, compute and print.</span> |
| <span class="n">res</span> <span class="o">=</span> <span class="p">(</span><span class="n">fed_a</span> <span class="o">*</span> <span class="n">fed_b</span><span class="p">)</span><span class="o">.</span><span class="n">compute</span><span class="p">()</span> |
| |
| <span class="nb">print</span><span class="p">(</span><span class="n">res</span><span class="p">)</span> |
| </pre></div> |
| </div> |
| <p>The print should look like:</p> |
| <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="p">[[</span> <span class="mf">1.</span> <span class="mf">4.</span> <span class="mf">9.</span> <span class="mf">1.</span> <span class="mf">4.</span> <span class="mf">9.</span><span class="p">]</span> |
| <span class="p">[</span><span class="mf">16.</span> <span class="mf">25.</span> <span class="mf">36.</span> <span class="mf">16.</span> <span class="mf">25.</span> <span class="mf">36.</span><span class="p">]</span> |
| <span class="p">[</span><span class="mf">49.</span> <span class="mf">64.</span> <span class="mf">81.</span> <span class="mf">49.</span> <span class="mf">64.</span> <span class="mf">81.</span><span class="p">]]</span> |
| </pre></div> |
| </div> |
| <div class="admonition note"> |
| <p class="admonition-title">Note</p> |
| <p>If it does not work, then double check |
| that you have:</p> |
| <p>a csv file, mtd file, and SystemDS Environment is set correctly.</p> |
| </div> |
| </div> |
| </div> |
| |
| |
| </div> |
| |
| </div> |
| <footer> |
| |
| <div class="rst-footer-buttons" role="navigation" aria-label="footer navigation"> |
| |
| <a href="algorithms_basics.html" class="btn btn-neutral float-right" title="Built-in Algorithms" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right"></span></a> |
| |
| |
| <a href="../getting_started/simple_examples.html" class="btn btn-neutral float-left" title="QuickStart" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left"></span> Previous</a> |
| |
| </div> |
| |
| |
| <hr/> |
| |
| <div role="contentinfo"> |
| <p> |
| |
| © Copyright 2020, Apache SystemDS |
| |
| </p> |
| </div> |
| |
| |
| |
| Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a |
| |
| <a href="https://github.com/rtfd/sphinx_rtd_theme">theme</a> |
| |
| provided by <a href="https://readthedocs.org">Read the Docs</a>. |
| |
| </footer> |
| |
| </div> |
| </div> |
| |
| </section> |
| |
| </div> |
| |
| |
| <script type="text/javascript"> |
| jQuery(function () { |
| SphinxRtdTheme.Navigation.enable(true); |
| }); |
| </script> |
| |
| |
| |
| |
| |
| |
| </body> |
| </html> |