src/main/java/org/apache/sysds/runtime/io/TensorReaderTextCell.java

/*
 * Licensed to the Apache Software Foundation (ASF) under one
 * or more contributor license agreements.  See the NOTICE file
 * distributed with this work for additional information
 * regarding copyright ownership.  The ASF licenses this file
 * to you under the Apache License, Version 2.0 (the
 * "License"); you may not use this file except in compliance
 * with the License.  You may obtain a copy of the License at
 *
 *   http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing,
 * software distributed under the License is distributed on an
 * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
 * KIND, either express or implied.  See the License for the
 * specific language governing permissions and limitations
 * under the License.
 */

package org.apache.sysds.runtime.io;

import org.apache.hadoop.fs.FileSystem;
import org.apache.hadoop.fs.Path;
import org.apache.hadoop.io.LongWritable;
import org.apache.hadoop.io.Text;
import org.apache.hadoop.mapred.FileInputFormat;
import org.apache.hadoop.mapred.InputSplit;
import org.apache.hadoop.mapred.JobConf;
import org.apache.hadoop.mapred.RecordReader;
import org.apache.hadoop.mapred.Reporter;
import org.apache.hadoop.mapred.TextInputFormat;
import org.apache.sysds.common.Types.ValueType;
import org.apache.sysds.conf.ConfigurationManager;
import org.apache.sysds.runtime.DMLRuntimeException;
import org.apache.sysds.runtime.data.TensorBlock;

import java.io.IOException;
import java.util.Arrays;

public class TensorReaderTextCell extends TensorReader {

	@Override
	public TensorBlock readTensorFromHDFS(String fname, long[] dims,
			int blen, ValueType[] schema) throws IOException, DMLRuntimeException {
		//prepare file access
		JobConf job = new JobConf(ConfigurationManager.getCachedJobConf());
		Path path = new Path(fname);
		FileSystem fs = IOUtilFunctions.getFileSystem(path, job);

		//check existence and non-empty file
		checkValidInputFile(fs, path);

		//allocate output matrix block
		return readTextCellTensorFromHDFS(path, job, dims, schema);
	}

	protected TensorBlock readTextCellTensorFromHDFS(Path path, JobConf job, long[] dims, ValueType[] schema) throws IOException {
		FileInputFormat.addInputPath(job, path);
		TextInputFormat informat = new TextInputFormat();
		informat.configure(job);
		InputSplit[] splits = informat.getSplits(job, 1);

		LongWritable key = new LongWritable();
		Text value = new Text();
		int[] idims = Arrays.stream(dims).mapToInt(i -> (int) i).toArray();
		TensorBlock ret;
		if (schema.length == 1)
			ret = new TensorBlock(schema[0], idims).allocateBlock();
		else
			ret = new TensorBlock(schema, idims).allocateBlock();

		try {
			int[] ix = new int[dims.length];
			for (InputSplit split : splits) {
				RecordReader<LongWritable, Text> reader = informat.getRecordReader(split, job, Reporter.NULL);
				try {
					while (reader.next(key, value)) {
						String[] parts = Arrays.stream(IOUtilFunctions.splitCSV(value.toString(), " "))
								.filter(s -> !s.isEmpty()).toArray(String[]::new);
						for (int i = 0; i < ix.length; i++) {
							ix[i] = Integer.parseInt(parts[i]) - 1;
						}
						ret.set(ix, parts[ix.length]);
					}
				}
				finally {
					IOUtilFunctions.closeSilently(reader);
				}
			}
		}
		catch (Exception ex) {
			throw new IOException("Unable to read tensor in text cell format.", ex);
		}
		return ret;
	}
}