R/pkg/tests/fulltests/test_mllib_stat.R

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library(testthat)

context("MLlib statistics algorithms")

# Tests for MLlib statistics algorithms in SparkR
sparkSession <- sparkR.session(master = sparkRTestMaster, enableHiveSupport = FALSE)

test_that("spark.kstest", {
  data <- data.frame(test = c(0.1, 0.15, 0.2, 0.3, 0.25, -1, -0.5))
  df <- createDataFrame(data)
  testResult <- spark.kstest(df, "test", "norm")
  stats <- summary(testResult)

  rStats <- ks.test(data$test, "pnorm", alternative = "two.sided")

  expect_equal(stats$p.value, rStats$p.value, tolerance = 1e-4)
  expect_equal(stats$statistic, unname(rStats$statistic), tolerance = 1e-4)
  expect_match(capture.output(stats)[1], "Kolmogorov-Smirnov test summary:")

  testResult <- spark.kstest(df, "test", "norm", -0.5)
  stats <- summary(testResult)

  rStats <- ks.test(data$test, "pnorm", -0.5, 1, alternative = "two.sided")

  expect_equal(stats$p.value, rStats$p.value, tolerance = 1e-4)
  expect_equal(stats$statistic, unname(rStats$statistic), tolerance = 1e-4)
  expect_match(capture.output(stats)[1], "Kolmogorov-Smirnov test summary:")

  # Test print.summary.KSTest
  printStats <- capture.output(print.summary.KSTest(stats))
  expect_match(printStats[1], "Kolmogorov-Smirnov test summary:")
  expect_match(printStats[5],
               "Low presumption against null hypothesis: Sample follows theoretical distribution. ")
})

sparkR.session.stop()