| # Licensed to the Apache Software Foundation (ASF) under one |
| # or more contributor license agreements. See the NOTICE file |
| # distributed with this work for additional information |
| # regarding copyright ownership. The ASF licenses this file |
| # to you under the Apache License, Version 2.0 (the |
| # "License"); you may not use this file except in compliance |
| # with the License. You may obtain a copy of the License at |
| # |
| # http://www.apache.org/licenses/LICENSE-2.0 |
| # |
| # Unless required by applicable law or agreed to in writing, |
| # software distributed under the License is distributed on an |
| # "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY |
| # KIND, either express or implied. See the License for the |
| # specific language governing permissions and limitations |
| # under the License. |
| |
| import datetime |
| import inspect |
| import os |
| import pathlib |
| import sys |
| |
| try: |
| import numpy as np |
| except ImportError: |
| np = None |
| import pytest |
| import unittest.mock as mock |
| |
| import pyarrow as pa |
| import pyarrow.compute as pc |
| from pyarrow.fs import (FileSelector, FileSystem, LocalFileSystem, |
| PyFileSystem, SubTreeFileSystem, FSSpecHandler) |
| from pyarrow.tests import util |
| from pyarrow.util import guid |
| |
| try: |
| import pyarrow.parquet as pq |
| from pyarrow.tests.parquet.common import ( |
| _read_table, _test_dataframe, _test_table, _write_table) |
| except ImportError: |
| pq = None |
| |
| |
| try: |
| import pandas as pd |
| import pandas.testing as tm |
| |
| except ImportError: |
| pd = tm = None |
| |
| |
| # Marks all of the tests in this module |
| # Ignore these with pytest ... -m 'not parquet' |
| pytestmark = [pytest.mark.parquet, pytest.mark.dataset] |
| |
| |
| def test_filesystem_uri(tempdir): |
| table = pa.table({"a": [1, 2, 3]}) |
| |
| directory = tempdir / "data_dir" |
| directory.mkdir() |
| path = directory / "data.parquet" |
| pq.write_table(table, str(path)) |
| |
| # filesystem object |
| result = pq.read_table( |
| path, filesystem=LocalFileSystem()) |
| assert result.equals(table) |
| |
| # filesystem URI |
| result = pq.read_table( |
| "data_dir/data.parquet", filesystem=util._filesystem_uri(tempdir)) |
| assert result.equals(table) |
| |
| |
| @pytest.mark.pandas |
| def test_read_partitioned_directory(tempdir): |
| local = LocalFileSystem() |
| _partition_test_for_filesystem(local, tempdir) |
| |
| |
| @pytest.mark.pandas |
| def test_read_partitioned_columns_selection(tempdir): |
| # ARROW-3861 - do not include partition columns in resulting table when |
| # `columns` keyword was passed without those columns |
| local = LocalFileSystem() |
| base_path = tempdir |
| _partition_test_for_filesystem(local, base_path) |
| |
| dataset = pq.ParquetDataset(base_path) |
| result = dataset.read(columns=["values"]) |
| assert result.column_names == ["values"] |
| |
| |
| @pytest.mark.pandas |
| def test_filters_equivalency(tempdir): |
| local = LocalFileSystem() |
| base_path = tempdir |
| |
| integer_keys = [0, 1] |
| string_keys = ['a', 'b', 'c'] |
| boolean_keys = [True, False] |
| partition_spec = [ |
| ['integer', integer_keys], |
| ['string', string_keys], |
| ['boolean', boolean_keys] |
| ] |
| |
| df = pd.DataFrame({ |
| 'integer': np.array(integer_keys, dtype='i4').repeat(15), |
| 'string': np.tile(np.tile(np.array(string_keys, dtype=object), 5), 2), |
| 'boolean': np.tile(np.tile(np.array(boolean_keys, dtype='bool'), 5), 3), |
| 'values': np.arange(30), |
| }) |
| |
| _generate_partition_directories(local, base_path, partition_spec, df) |
| |
| # Old filters syntax: |
| # integer == 1 AND string != b AND boolean == True |
| dataset = pq.ParquetDataset( |
| base_path, filesystem=local, |
| filters=[('integer', '=', 1), ('string', '!=', 'b'), |
| ('boolean', '==', 'True')], |
| ) |
| table = dataset.read() |
| result_df = (table.to_pandas().reset_index(drop=True)) |
| |
| assert 0 not in result_df['integer'].values |
| assert 'b' not in result_df['string'].values |
| assert False not in result_df['boolean'].values |
| |
| # filters in disjunctive normal form: |
| # (integer == 1 AND string != b AND boolean == True) OR |
| # (integer == 2 AND boolean == False) |
| # TODO(ARROW-3388): boolean columns are reconstructed as string |
| filters = [ |
| [ |
| ('integer', '=', 1), |
| ('string', '!=', 'b'), |
| ('boolean', '==', 'True') |
| ], |
| [('integer', '=', 0), ('boolean', '==', 'False')] |
| ] |
| dataset = pq.ParquetDataset( |
| base_path, filesystem=local, filters=filters) |
| table = dataset.read() |
| result_df = table.to_pandas().reset_index(drop=True) |
| |
| # Check that all rows in the DF fulfill the filter |
| df_filter_1 = (result_df['integer'] == 1) \ |
| & (result_df['string'] != 'b') \ |
| & (result_df['boolean'] == 'True') |
| df_filter_2 = (np.array(result_df['integer']) == 0) \ |
| & (result_df['boolean'] == 'False') |
| assert df_filter_1.sum() > 0 |
| assert df_filter_2.sum() > 0 |
| assert result_df.shape[0] == (df_filter_1.sum() + df_filter_2.sum()) |
| |
| for filters in [[[('string', '==', b'1\0a')]], |
| [[('string', '==', '1\0a')]]]: |
| dataset = pq.ParquetDataset( |
| base_path, filesystem=local, filters=filters) |
| assert dataset.read().num_rows == 0 |
| |
| |
| @pytest.mark.pandas |
| def test_filters_cutoff_exclusive_integer(tempdir): |
| local = LocalFileSystem() |
| base_path = tempdir |
| |
| integer_keys = [0, 1, 2, 3, 4] |
| partition_spec = [ |
| ['integers', integer_keys], |
| ] |
| N = 5 |
| |
| df = pd.DataFrame({ |
| 'index': np.arange(N), |
| 'integers': np.array(integer_keys, dtype='i4'), |
| }, columns=['index', 'integers']) |
| |
| _generate_partition_directories(local, base_path, partition_spec, df) |
| |
| dataset = pq.ParquetDataset( |
| base_path, filesystem=local, |
| filters=[ |
| ('integers', '<', 4), |
| ('integers', '>', 1), |
| ], |
| ) |
| table = dataset.read() |
| result_df = (table.to_pandas() |
| .sort_values(by='index') |
| .reset_index(drop=True)) |
| |
| result_list = [x for x in map(int, result_df['integers'].values)] |
| assert result_list == [2, 3] |
| |
| |
| @pytest.mark.xfail( |
| # different error with use_legacy_datasets because result_df is no longer |
| # categorical |
| raises=(TypeError, AssertionError), |
| reason='Loss of type information in creation of categoricals.' |
| ) |
| @pytest.mark.pandas |
| def test_filters_cutoff_exclusive_datetime(tempdir): |
| local = LocalFileSystem() |
| base_path = tempdir |
| |
| date_keys = [ |
| datetime.date(2018, 4, 9), |
| datetime.date(2018, 4, 10), |
| datetime.date(2018, 4, 11), |
| datetime.date(2018, 4, 12), |
| datetime.date(2018, 4, 13) |
| ] |
| partition_spec = [ |
| ['dates', date_keys] |
| ] |
| N = 5 |
| |
| df = pd.DataFrame({ |
| 'index': np.arange(N), |
| 'dates': np.array(date_keys, dtype='datetime64'), |
| }, columns=['index', 'dates']) |
| |
| _generate_partition_directories(local, base_path, partition_spec, df) |
| |
| dataset = pq.ParquetDataset( |
| base_path, filesystem=local, |
| filters=[ |
| ('dates', '<', "2018-04-12"), |
| ('dates', '>', "2018-04-10") |
| ], |
| ) |
| table = dataset.read() |
| result_df = (table.to_pandas() |
| .sort_values(by='index') |
| .reset_index(drop=True)) |
| |
| expected = pd.Categorical( |
| np.array([datetime.date(2018, 4, 11)], dtype='datetime64'), |
| categories=np.array(date_keys, dtype='datetime64')) |
| |
| assert result_df['dates'].values == expected |
| |
| |
| @pytest.mark.pandas |
| def test_filters_inclusive_datetime(tempdir): |
| # ARROW-11480 |
| path = tempdir / 'timestamps.parquet' |
| |
| pd.DataFrame({ |
| "dates": pd.date_range("2020-01-01", periods=10, freq="D"), |
| "id": range(10) |
| }).to_parquet(path, use_deprecated_int96_timestamps=True) |
| |
| table = pq.read_table(path, filters=[ |
| ("dates", "<=", datetime.datetime(2020, 1, 5)) |
| ]) |
| |
| assert table.column('id').to_pylist() == [0, 1, 2, 3, 4] |
| |
| |
| @pytest.mark.pandas |
| def test_filters_inclusive_integer(tempdir): |
| local = LocalFileSystem() |
| base_path = tempdir |
| |
| integer_keys = [0, 1, 2, 3, 4] |
| partition_spec = [ |
| ['integers', integer_keys], |
| ] |
| N = 5 |
| |
| df = pd.DataFrame({ |
| 'index': np.arange(N), |
| 'integers': np.array(integer_keys, dtype='i4'), |
| }, columns=['index', 'integers']) |
| |
| _generate_partition_directories(local, base_path, partition_spec, df) |
| |
| dataset = pq.ParquetDataset( |
| base_path, filesystem=local, |
| filters=[ |
| ('integers', '<=', 3), |
| ('integers', '>=', 2), |
| ], |
| ) |
| table = dataset.read() |
| result_df = (table.to_pandas() |
| .sort_values(by='index') |
| .reset_index(drop=True)) |
| |
| result_list = [int(x) for x in map(int, result_df['integers'].values)] |
| assert result_list == [2, 3] |
| |
| |
| @pytest.mark.pandas |
| def test_filters_inclusive_set(tempdir): |
| local = LocalFileSystem() |
| base_path = tempdir |
| |
| integer_keys = [0, 1] |
| string_keys = ['a', 'b', 'c'] |
| boolean_keys = [True, False] |
| partition_spec = [ |
| ['integer', integer_keys], |
| ['string', string_keys], |
| ['boolean', boolean_keys] |
| ] |
| |
| df = pd.DataFrame({ |
| 'integer': np.array(integer_keys, dtype='i4').repeat(15), |
| 'string': np.tile(np.tile(np.array(string_keys, dtype=object), 5), 2), |
| 'boolean': np.tile(np.tile(np.array(boolean_keys, dtype='bool'), 5), 3), |
| 'values': np.arange(30), |
| }) |
| |
| _generate_partition_directories(local, base_path, partition_spec, df) |
| |
| dataset = pq.ParquetDataset( |
| base_path, filesystem=local, |
| filters=[('string', 'in', 'ab')], |
| ) |
| table = dataset.read() |
| result_df = (table.to_pandas().reset_index(drop=True)) |
| |
| assert 'a' in result_df['string'].values |
| assert 'b' in result_df['string'].values |
| assert 'c' not in result_df['string'].values |
| |
| dataset = pq.ParquetDataset( |
| base_path, filesystem=local, |
| filters=[('integer', 'in', [1]), ('string', 'in', ('a', 'b')), |
| ('boolean', 'not in', {'False'})], |
| ) |
| table = dataset.read() |
| result_df = (table.to_pandas().reset_index(drop=True)) |
| |
| assert 0 not in result_df['integer'].values |
| assert 'c' not in result_df['string'].values |
| assert False not in result_df['boolean'].values |
| |
| |
| @pytest.mark.pandas |
| def test_filters_invalid_pred_op(tempdir): |
| local = LocalFileSystem() |
| base_path = tempdir |
| |
| integer_keys = [0, 1, 2, 3, 4] |
| partition_spec = [ |
| ['integers', integer_keys], |
| ] |
| N = 5 |
| |
| df = pd.DataFrame({ |
| 'index': np.arange(N), |
| 'integers': np.array(integer_keys, dtype='i4'), |
| }, columns=['index', 'integers']) |
| |
| _generate_partition_directories(local, base_path, partition_spec, df) |
| |
| with pytest.raises(TypeError): |
| pq.ParquetDataset(base_path, |
| filesystem=local, |
| filters=[('integers', 'in', 3), ]) |
| |
| with pytest.raises(ValueError): |
| pq.ParquetDataset(base_path, |
| filesystem=local, |
| filters=[('integers', '=<', 3), ]) |
| |
| # Dataset API returns empty table |
| dataset = pq.ParquetDataset(base_path, |
| filesystem=local, |
| filters=[('integers', 'in', set()), ]) |
| assert dataset.read().num_rows == 0 |
| |
| dataset = pq.ParquetDataset(base_path, |
| filesystem=local, |
| filters=[('integers', '!=', {3})]) |
| with pytest.raises(NotImplementedError): |
| assert dataset.read().num_rows == 0 |
| |
| |
| @pytest.mark.pandas |
| def test_filters_invalid_column(tempdir): |
| # ARROW-5572 - raise error on invalid name in filter specification |
| # works with new dataset |
| local = LocalFileSystem() |
| base_path = tempdir |
| |
| integer_keys = [0, 1, 2, 3, 4] |
| partition_spec = [['integers', integer_keys]] |
| N = 5 |
| |
| df = pd.DataFrame({ |
| 'index': np.arange(N), |
| 'integers': np.array(integer_keys, dtype='i4'), |
| }, columns=['index', 'integers']) |
| |
| _generate_partition_directories(local, base_path, partition_spec, df) |
| |
| msg = r"No match for FieldRef.Name\(non_existent_column\)" |
| with pytest.raises(ValueError, match=msg): |
| pq.ParquetDataset(base_path, filesystem=local, |
| filters=[('non_existent_column', '<', 3), ]).read() |
| |
| |
| @pytest.mark.pandas |
| @pytest.mark.parametrize("filters", |
| ([('integers', '<', 3)], |
| [[('integers', '<', 3)]], |
| pc.field('integers') < 3, |
| pc.field('nested', 'a') < 3, |
| pc.field('nested', 'b').cast(pa.int64()) < 3)) |
| @pytest.mark.parametrize("read_method", ("read_table", "read_pandas")) |
| def test_filters_read_table(tempdir, filters, read_method): |
| read = getattr(pq, read_method) |
| # test that filters keyword is passed through in read_table |
| local = LocalFileSystem() |
| base_path = tempdir |
| |
| integer_keys = [0, 1, 2, 3, 4] |
| partition_spec = [ |
| ['integers', integer_keys], |
| ] |
| N = len(integer_keys) |
| |
| df = pd.DataFrame({ |
| 'index': np.arange(N), |
| 'integers': np.array(integer_keys, dtype='i4'), |
| 'nested': np.array([{'a': i, 'b': str(i)} for i in range(N)]) |
| }) |
| |
| _generate_partition_directories(local, base_path, partition_spec, df) |
| |
| kwargs = dict(filesystem=local, filters=filters) |
| |
| table = read(base_path, **kwargs) |
| assert table.num_rows == 3 |
| |
| |
| @pytest.mark.pandas |
| def test_partition_keys_with_underscores(tempdir): |
| # ARROW-5666 - partition field values with underscores preserve underscores |
| local = LocalFileSystem() |
| base_path = tempdir |
| |
| string_keys = ["2019_2", "2019_3"] |
| partition_spec = [ |
| ['year_week', string_keys], |
| ] |
| N = 2 |
| |
| df = pd.DataFrame({ |
| 'index': np.arange(N), |
| 'year_week': np.array(string_keys, dtype='object'), |
| }, columns=['index', 'year_week']) |
| |
| _generate_partition_directories(local, base_path, partition_spec, df) |
| |
| dataset = pq.ParquetDataset(base_path) |
| result = dataset.read() |
| assert result.column("year_week").to_pylist() == string_keys |
| |
| |
| @pytest.mark.s3 |
| def test_read_s3fs(s3_example_s3fs, ): |
| fs, path = s3_example_s3fs |
| path = path + "/test.parquet" |
| table = pa.table({"a": [1, 2, 3]}) |
| _write_table(table, path, filesystem=fs) |
| |
| result = _read_table(path, filesystem=fs) |
| assert result.equals(table) |
| |
| |
| @pytest.mark.s3 |
| def test_read_directory_s3fs(s3_example_s3fs): |
| fs, directory = s3_example_s3fs |
| path = directory + "/test.parquet" |
| table = pa.table({"a": [1, 2, 3]}) |
| _write_table(table, path, filesystem=fs) |
| |
| result = _read_table(directory, filesystem=fs) |
| assert result.equals(table) |
| |
| |
| @pytest.mark.pandas |
| def test_read_single_file_list(tempdir): |
| data_path = str(tempdir / 'data.parquet') |
| |
| table = pa.table({"a": [1, 2, 3]}) |
| _write_table(table, data_path) |
| |
| result = pq.ParquetDataset([data_path]).read() |
| assert result.equals(table) |
| |
| |
| @pytest.mark.pandas |
| @pytest.mark.s3 |
| def test_read_partitioned_directory_s3fs(s3_example_s3fs): |
| fs, path = s3_example_s3fs |
| _partition_test_for_filesystem(fs, path) |
| |
| |
| def _partition_test_for_filesystem(fs, base_path): |
| foo_keys = [0, 1] |
| bar_keys = ['a', 'b', 'c'] |
| partition_spec = [ |
| ['foo', foo_keys], |
| ['bar', bar_keys] |
| ] |
| N = 30 |
| |
| df = pd.DataFrame({ |
| 'index': np.arange(N), |
| 'foo': np.array(foo_keys, dtype='i4').repeat(15), |
| 'bar': np.tile(np.tile(np.array(bar_keys, dtype=object), 5), 2), |
| 'values': np.random.randn(N) |
| }, columns=['index', 'foo', 'bar', 'values']) |
| |
| _generate_partition_directories(fs, base_path, partition_spec, df) |
| |
| dataset = pq.ParquetDataset(base_path, filesystem=fs) |
| table = dataset.read() |
| result_df = (table.to_pandas() |
| .sort_values(by='index') |
| .reset_index(drop=True)) |
| |
| expected_df = (df.sort_values(by='index') |
| .reset_index(drop=True) |
| .reindex(columns=result_df.columns)) |
| |
| # With pandas 2.0.0 Index can store all numeric dtypes (not just |
| # int64/uint64/float64). Using astype() to create a categorical |
| # column preserves original dtype (int32) |
| expected_df['foo'] = expected_df['foo'].astype("category") |
| expected_df['bar'] = expected_df['bar'].astype("category") |
| |
| assert (result_df.columns == ['index', 'values', 'foo', 'bar']).all() |
| |
| tm.assert_frame_equal(result_df, expected_df) |
| |
| |
| def _generate_partition_directories(fs, base_dir, partition_spec, df): |
| # partition_spec : list of lists, e.g. [['foo', [0, 1, 2], |
| # ['bar', ['a', 'b', 'c']] |
| # part_table : a pyarrow.Table to write to each partition |
| if not isinstance(fs, FileSystem): |
| fs = PyFileSystem(FSSpecHandler(fs)) |
| |
| DEPTH = len(partition_spec) |
| |
| pathsep = getattr(fs, "pathsep", getattr(fs, "sep", "/")) |
| |
| def _visit_level(base_dir, level, part_keys): |
| name, values = partition_spec[level] |
| for value in values: |
| this_part_keys = part_keys + [(name, value)] |
| |
| level_dir = pathsep.join([ |
| str(base_dir), |
| f'{name}={value}' |
| ]) |
| fs.create_dir(level_dir) |
| |
| if level == DEPTH - 1: |
| # Generate example data |
| from pyarrow.fs import FileType |
| |
| file_path = pathsep.join([level_dir, guid()]) |
| filtered_df = _filter_partition(df, this_part_keys) |
| part_table = pa.Table.from_pandas(filtered_df) |
| with fs.open_output_stream(file_path) as f: |
| _write_table(part_table, f) |
| assert fs.get_file_info(file_path).type != FileType.NotFound |
| assert fs.get_file_info(file_path).type == FileType.File |
| |
| file_success = pathsep.join([level_dir, '_SUCCESS']) |
| with fs.open_output_stream(file_success) as f: |
| pass |
| else: |
| _visit_level(level_dir, level + 1, this_part_keys) |
| file_success = pathsep.join([level_dir, '_SUCCESS']) |
| with fs.open_output_stream(file_success) as f: |
| pass |
| |
| _visit_level(base_dir, 0, []) |
| |
| |
| def _filter_partition(df, part_keys): |
| predicate = np.ones(len(df), dtype=bool) |
| |
| to_drop = [] |
| for name, value in part_keys: |
| to_drop.append(name) |
| |
| # to avoid pandas warning |
| if isinstance(value, (datetime.date, datetime.datetime)): |
| value = pd.Timestamp(value) |
| |
| predicate &= df[name] == value |
| |
| return df[predicate].drop(to_drop, axis=1) |
| |
| |
| @pytest.mark.pandas |
| def test_filter_before_validate_schema(tempdir): |
| # ARROW-4076 apply filter before schema validation |
| # to avoid checking unneeded schemas |
| |
| # create partitioned dataset with mismatching schemas which would |
| # otherwise raise if first validation all schemas |
| dir1 = tempdir / 'A=0' |
| dir1.mkdir() |
| table1 = pa.Table.from_pandas(pd.DataFrame({'B': [1, 2, 3]})) |
| pq.write_table(table1, dir1 / 'data.parquet') |
| |
| dir2 = tempdir / 'A=1' |
| dir2.mkdir() |
| table2 = pa.Table.from_pandas(pd.DataFrame({'B': ['a', 'b', 'c']})) |
| pq.write_table(table2, dir2 / 'data.parquet') |
| |
| # read single file using filter |
| table = pq.read_table(tempdir, filters=[[('A', '==', 0)]]) |
| assert table.column('B').equals(pa.chunked_array([[1, 2, 3]])) |
| |
| |
| @pytest.mark.pandas |
| def test_read_multiple_files(tempdir): |
| nfiles = 10 |
| size = 5 |
| |
| dirpath = tempdir / guid() |
| dirpath.mkdir() |
| |
| test_data = [] |
| paths = [] |
| for i in range(nfiles): |
| df = _test_dataframe(size, seed=i) |
| |
| # Hack so that we don't have a dtype cast in v1 files |
| df['uint32'] = df['uint32'].astype(np.int64) |
| |
| path = dirpath / f'{i}.parquet' |
| |
| table = pa.Table.from_pandas(df) |
| _write_table(table, path) |
| |
| test_data.append(table) |
| paths.append(path) |
| |
| # Write a _SUCCESS.crc file |
| (dirpath / '_SUCCESS.crc').touch() |
| |
| def read_multiple_files(paths, columns=None, use_threads=True, **kwargs): |
| dataset = pq.ParquetDataset(paths, **kwargs) |
| return dataset.read(columns=columns, use_threads=use_threads) |
| |
| result = read_multiple_files(paths) |
| expected = pa.concat_tables(test_data) |
| |
| assert result.equals(expected) |
| |
| # Read column subset |
| to_read = [0, 2, 6, result.num_columns - 1] |
| |
| col_names = [result.field(i).name for i in to_read] |
| out = pq.read_table(dirpath, columns=col_names) |
| expected = pa.Table.from_arrays([result.column(i) for i in to_read], |
| names=col_names, |
| metadata=result.schema.metadata) |
| assert out.equals(expected) |
| |
| # Read with multiple threads |
| pq.read_table(dirpath, use_threads=True) |
| |
| # Test failure modes with non-uniform metadata |
| bad_apple = _test_dataframe(size, seed=i).iloc[:, :4] |
| bad_apple_path = tempdir / f'{guid()}.parquet' |
| |
| t = pa.Table.from_pandas(bad_apple) |
| _write_table(t, bad_apple_path) |
| |
| # TODO(dataset) Dataset API skips bad files |
| |
| # bad_meta = pq.read_metadata(bad_apple_path) |
| |
| # with pytest.raises(ValueError): |
| # read_multiple_files(paths + [bad_apple_path]) |
| |
| # with pytest.raises(ValueError): |
| # read_multiple_files(paths, metadata=bad_meta) |
| |
| # mixed_paths = [bad_apple_path, paths[0]] |
| |
| # with pytest.raises(ValueError): |
| # read_multiple_files(mixed_paths) |
| |
| |
| @pytest.mark.pandas |
| def test_dataset_read_pandas(tempdir): |
| nfiles = 5 |
| size = 5 |
| |
| dirpath = tempdir / guid() |
| dirpath.mkdir() |
| |
| test_data = [] |
| frames = [] |
| paths = [] |
| for i in range(nfiles): |
| df = _test_dataframe(size, seed=i) |
| df.index = np.arange(i * size, (i + 1) * size) |
| df.index.name = 'index' |
| |
| path = dirpath / f'{i}.parquet' |
| |
| table = pa.Table.from_pandas(df) |
| _write_table(table, path) |
| test_data.append(table) |
| frames.append(df) |
| paths.append(path) |
| |
| dataset = pq.ParquetDataset(dirpath) |
| columns = ['uint8', 'strings'] |
| result = dataset.read_pandas(columns=columns).to_pandas() |
| expected = pd.concat([x[columns] for x in frames]) |
| |
| tm.assert_frame_equal(result, expected) |
| |
| # also be able to pass the columns as a set (ARROW-12314) |
| result = dataset.read_pandas(columns=set(columns)).to_pandas() |
| assert result.shape == expected.shape |
| # column order can be different because of using a set |
| tm.assert_frame_equal(result.reindex(columns=expected.columns), expected) |
| |
| |
| @pytest.mark.numpy |
| def test_dataset_memory_map(tempdir): |
| # ARROW-2627: Check that we can use ParquetDataset with memory-mapping |
| dirpath = tempdir / guid() |
| dirpath.mkdir() |
| |
| table = _test_table(10, seed=0) |
| path = dirpath / '0.parquet' |
| _write_table(table, path, version='2.6') |
| |
| dataset = pq.ParquetDataset( |
| dirpath, memory_map=True) |
| assert dataset.read().equals(table) |
| |
| |
| @pytest.mark.numpy |
| def test_dataset_enable_buffered_stream(tempdir): |
| dirpath = tempdir / guid() |
| dirpath.mkdir() |
| |
| table = _test_table(10, seed=0) |
| path = dirpath / '0.parquet' |
| _write_table(table, path, version='2.6') |
| |
| with pytest.raises(ValueError): |
| pq.ParquetDataset( |
| dirpath, buffer_size=-64) |
| |
| for buffer_size in [128, 1024]: |
| dataset = pq.ParquetDataset( |
| dirpath, buffer_size=buffer_size) |
| assert dataset.read().equals(table) |
| |
| |
| @pytest.mark.numpy |
| def test_dataset_enable_pre_buffer(tempdir): |
| dirpath = tempdir / guid() |
| dirpath.mkdir() |
| |
| table = _test_table(10, seed=0) |
| path = dirpath / '0.parquet' |
| _write_table(table, path, version='2.6') |
| |
| for pre_buffer in (True, False): |
| dataset = pq.ParquetDataset( |
| dirpath, pre_buffer=pre_buffer) |
| assert dataset.read().equals(table) |
| actual = pq.read_table(dirpath, pre_buffer=pre_buffer) |
| assert actual.equals(table) |
| |
| |
| def _make_example_multifile_dataset(base_path, nfiles=10, file_nrows=5): |
| test_data = [] |
| paths = [] |
| for i in range(nfiles): |
| table = _test_table(file_nrows, seed=i) |
| path = base_path / f'{i}.parquet' |
| |
| test_data.append(_write_table(table, path)) |
| paths.append(path) |
| return paths |
| |
| |
| def _assert_dataset_paths(dataset, paths): |
| paths = [str(path.as_posix()) for path in paths] |
| assert set(paths) == set(dataset.files) |
| |
| |
| @pytest.mark.numpy |
| @pytest.mark.parametrize('dir_prefix', ['_', '.']) |
| def test_ignore_private_directories(tempdir, dir_prefix): |
| dirpath = tempdir / guid() |
| dirpath.mkdir() |
| |
| paths = _make_example_multifile_dataset(dirpath, nfiles=10, |
| file_nrows=5) |
| |
| # private directory |
| (dirpath / f'{dir_prefix}staging').mkdir() |
| |
| dataset = pq.ParquetDataset(dirpath) |
| |
| _assert_dataset_paths(dataset, paths) |
| |
| |
| @pytest.mark.numpy |
| def test_ignore_hidden_files_dot(tempdir): |
| dirpath = tempdir / guid() |
| dirpath.mkdir() |
| |
| paths = _make_example_multifile_dataset(dirpath, nfiles=10, |
| file_nrows=5) |
| |
| with (dirpath / '.DS_Store').open('wb') as f: |
| f.write(b'gibberish') |
| |
| with (dirpath / '.private').open('wb') as f: |
| f.write(b'gibberish') |
| |
| dataset = pq.ParquetDataset(dirpath) |
| |
| _assert_dataset_paths(dataset, paths) |
| |
| |
| @pytest.mark.numpy |
| def test_ignore_hidden_files_underscore(tempdir): |
| dirpath = tempdir / guid() |
| dirpath.mkdir() |
| |
| paths = _make_example_multifile_dataset(dirpath, nfiles=10, |
| file_nrows=5) |
| |
| with (dirpath / '_committed_123').open('wb') as f: |
| f.write(b'abcd') |
| |
| with (dirpath / '_started_321').open('wb') as f: |
| f.write(b'abcd') |
| |
| dataset = pq.ParquetDataset(dirpath) |
| |
| _assert_dataset_paths(dataset, paths) |
| |
| |
| @pytest.mark.numpy |
| @pytest.mark.parametrize('dir_prefix', ['_', '.']) |
| def test_ignore_no_private_directories_in_base_path(tempdir, dir_prefix): |
| # ARROW-8427 - don't ignore explicitly listed files if parent directory |
| # is a private directory |
| dirpath = tempdir / f'{dir_prefix}data' / guid() |
| dirpath.mkdir(parents=True) |
| |
| paths = _make_example_multifile_dataset(dirpath, nfiles=10, |
| file_nrows=5) |
| |
| dataset = pq.ParquetDataset(paths) |
| _assert_dataset_paths(dataset, paths) |
| |
| # ARROW-9644 - don't ignore full directory with underscore in base path |
| dataset = pq.ParquetDataset(dirpath) |
| _assert_dataset_paths(dataset, paths) |
| |
| |
| def test_ignore_custom_prefixes(tempdir): |
| # ARROW-9573 - allow override of default ignore_prefixes |
| part = ["xxx"] * 3 + ["yyy"] * 3 |
| table = pa.table([ |
| pa.array(range(len(part))), |
| pa.array(part).dictionary_encode(), |
| ], names=['index', '_part']) |
| |
| pq.write_to_dataset(table, str(tempdir), partition_cols=['_part']) |
| |
| private_duplicate = tempdir / '_private_duplicate' |
| private_duplicate.mkdir() |
| pq.write_to_dataset(table, str(private_duplicate), |
| partition_cols=['_part']) |
| |
| read = pq.read_table( |
| tempdir, ignore_prefixes=['_private']) |
| |
| assert read.equals(table) |
| |
| |
| def test_empty_directory(tempdir): |
| # ARROW-5310 |
| empty_dir = tempdir / 'dataset' |
| empty_dir.mkdir() |
| |
| dataset = pq.ParquetDataset(empty_dir) |
| result = dataset.read() |
| assert result.num_rows == 0 |
| assert result.num_columns == 0 |
| |
| |
| def _test_write_to_dataset_with_partitions(base_path, |
| filesystem=None, |
| schema=None, |
| index_name=None): |
| import pandas as pd |
| import pandas.testing as tm |
| |
| import pyarrow.parquet as pq |
| |
| # ARROW-1400 |
| output_df = pd.DataFrame({ |
| 'group1': list('aaabbbbccc'), |
| 'group2': list('eefeffgeee'), |
| 'num': list(range(10)), |
| 'nan': [np.nan] * 10, |
| 'date': np.arange('2017-01-01', '2017-01-11', dtype='datetime64[D]').astype( |
| 'datetime64[ns]') |
| }) |
| cols = output_df.columns.tolist() |
| partition_by = ['group1', 'group2'] |
| output_table = pa.Table.from_pandas(output_df, schema=schema, safe=False, |
| preserve_index=False) |
| pq.write_to_dataset(output_table, base_path, partition_by, |
| filesystem=filesystem) |
| |
| metadata_path = os.path.join(str(base_path), '_common_metadata') |
| |
| if filesystem is not None: |
| with filesystem.open(metadata_path, 'wb') as f: |
| pq.write_metadata(output_table.schema, f) |
| else: |
| pq.write_metadata(output_table.schema, metadata_path) |
| |
| dataset = pq.ParquetDataset(base_path, |
| filesystem=filesystem) |
| # ARROW-2209: Ensure the dataset schema also includes the partition columns |
| # NB schema property is an arrow and not parquet schema |
| dataset_cols = set(dataset.schema.names) |
| |
| assert dataset_cols == set(output_table.schema.names) |
| |
| input_table = dataset.read() |
| input_df = input_table.to_pandas() |
| |
| # Read data back in and compare with original DataFrame |
| # Partitioned columns added to the end of the DataFrame when read |
| input_df_cols = input_df.columns.tolist() |
| assert partition_by == input_df_cols[-1 * len(partition_by):] |
| |
| input_df = input_df[cols] |
| # Partitioned columns become 'categorical' dtypes |
| for col in partition_by: |
| output_df[col] = output_df[col].astype('category') |
| |
| if schema: |
| expected_date_type = schema.field('date').type.to_pandas_dtype() |
| output_df["date"] = output_df["date"].astype(expected_date_type) |
| |
| tm.assert_frame_equal(output_df, input_df) |
| |
| |
| def _test_write_to_dataset_no_partitions(base_path, |
| filesystem=None): |
| import pandas as pd |
| |
| import pyarrow.parquet as pq |
| |
| # ARROW-1400 |
| output_df = pd.DataFrame({ |
| 'group1': list('aaabbbbccc'), |
| 'group2': list('eefeffgeee'), |
| 'num': list(range(10)), |
| 'date': np.arange('2017-01-01', '2017-01-11', dtype='datetime64[D]').astype( |
| 'datetime64[ns]') |
| }) |
| cols = output_df.columns.tolist() |
| output_table = pa.Table.from_pandas(output_df) |
| |
| if filesystem is None: |
| filesystem = LocalFileSystem() |
| elif not isinstance(filesystem, FileSystem): |
| filesystem = PyFileSystem(FSSpecHandler(filesystem)) |
| |
| # Without partitions, append files to root_path |
| n = 5 |
| for i in range(n): |
| pq.write_to_dataset(output_table, base_path, |
| filesystem=filesystem) |
| |
| selector = FileSelector(str(base_path), allow_not_found=False, |
| recursive=True) |
| |
| infos = filesystem.get_file_info(selector) |
| output_files = [info for info in infos if info.path.endswith(".parquet")] |
| assert len(output_files) == n |
| |
| # Deduplicated incoming DataFrame should match |
| # original outgoing Dataframe |
| input_table = pq.ParquetDataset( |
| base_path, filesystem=filesystem |
| ).read() |
| input_df = input_table.to_pandas() |
| input_df = input_df.drop_duplicates() |
| input_df = input_df[cols] |
| tm.assert_frame_equal(output_df, input_df) |
| |
| |
| @pytest.mark.pandas |
| def test_write_to_dataset_with_partitions(tempdir): |
| _test_write_to_dataset_with_partitions(str(tempdir)) |
| |
| |
| @pytest.mark.pandas |
| def test_write_to_dataset_with_partitions_and_schema(tempdir): |
| schema = pa.schema([pa.field('group1', type=pa.string()), |
| pa.field('group2', type=pa.string()), |
| pa.field('num', type=pa.int64()), |
| pa.field('nan', type=pa.int32()), |
| pa.field('date', type=pa.timestamp(unit='us'))]) |
| _test_write_to_dataset_with_partitions( |
| str(tempdir), schema=schema) |
| |
| |
| @pytest.mark.pandas |
| def test_write_to_dataset_with_partitions_and_index_name(tempdir): |
| _test_write_to_dataset_with_partitions( |
| str(tempdir), index_name='index_name') |
| |
| |
| @pytest.mark.pandas |
| def test_write_to_dataset_no_partitions(tempdir): |
| _test_write_to_dataset_no_partitions(str(tempdir)) |
| |
| |
| @pytest.mark.pandas |
| def test_write_to_dataset_pathlib(tempdir): |
| _test_write_to_dataset_with_partitions(tempdir / "test1") |
| _test_write_to_dataset_no_partitions(tempdir / "test2") |
| |
| |
| @pytest.mark.pandas |
| @pytest.mark.s3 |
| def test_write_to_dataset_pathlib_nonlocal(tempdir, s3_example_s3fs): |
| # pathlib paths are only accepted for local files |
| fs, _ = s3_example_s3fs |
| |
| with pytest.raises(TypeError, match="path-like objects are only allowed"): |
| _test_write_to_dataset_with_partitions( |
| tempdir / "test1", filesystem=fs) |
| |
| with pytest.raises(TypeError, match="path-like objects are only allowed"): |
| _test_write_to_dataset_no_partitions( |
| tempdir / "test2", filesystem=fs) |
| |
| |
| @pytest.mark.pandas |
| @pytest.mark.s3 |
| # See https://github.com/apache/arrow/pull/44225#issuecomment-2378365291 |
| @pytest.mark.skipif(sys.platform == "win32", |
| reason="test fails because of unsupported characters") |
| def test_write_to_dataset_with_partitions_s3fs(s3_example_s3fs): |
| fs, path = s3_example_s3fs |
| |
| _test_write_to_dataset_with_partitions( |
| path, filesystem=fs) |
| |
| |
| @pytest.mark.pandas |
| @pytest.mark.s3 |
| def test_write_to_dataset_no_partitions_s3fs(s3_example_s3fs): |
| fs, path = s3_example_s3fs |
| |
| _test_write_to_dataset_no_partitions( |
| path, filesystem=fs) |
| |
| |
| @pytest.mark.pandas |
| def test_write_to_dataset_filesystem(tempdir): |
| df = pd.DataFrame({'A': [1, 2, 3]}) |
| table = pa.Table.from_pandas(df) |
| path = str(tempdir) |
| |
| pq.write_to_dataset(table, path, filesystem=LocalFileSystem()) |
| result = pq.read_table(path) |
| assert result.equals(table) |
| |
| |
| def _make_dataset_for_pickling(tempdir, N=100): |
| path = tempdir / 'data.parquet' |
| local = LocalFileSystem() |
| |
| df = pd.DataFrame({ |
| 'index': np.arange(N), |
| 'values': np.random.randn(N) |
| }, columns=['index', 'values']) |
| table = pa.Table.from_pandas(df) |
| |
| num_groups = 3 |
| with pq.ParquetWriter(path, table.schema) as writer: |
| for i in range(num_groups): |
| writer.write_table(table) |
| |
| reader = pq.ParquetFile(path) |
| assert reader.metadata.num_row_groups == num_groups |
| |
| metadata_path = tempdir / '_metadata' |
| with local.open_output_stream(str(metadata_path)) as f: |
| pq.write_metadata(table.schema, f) |
| |
| dataset = pq.ParquetDataset( |
| tempdir, filesystem=local) |
| |
| return dataset |
| |
| |
| @pytest.mark.pandas |
| def test_pickle_dataset(tempdir, pickle_module): |
| def is_pickleable(obj): |
| return obj == pickle_module.loads(pickle_module.dumps(obj)) |
| |
| dataset = _make_dataset_for_pickling(tempdir) |
| assert is_pickleable(dataset) |
| |
| |
| @pytest.mark.pandas |
| def test_partitioned_dataset(tempdir): |
| # ARROW-3208: Segmentation fault when reading a Parquet partitioned dataset |
| # to a Parquet file |
| path = tempdir / "ARROW-3208" |
| df = pd.DataFrame({ |
| 'one': [-1, 10, 2.5, 100, 1000, 1, 29.2], |
| 'two': [-1, 10, 2, 100, 1000, 1, 11], |
| 'three': [0, 0, 0, 0, 0, 0, 0] |
| }) |
| table = pa.Table.from_pandas(df) |
| pq.write_to_dataset(table, root_path=str(path), |
| partition_cols=['one', 'two']) |
| table = pq.ParquetDataset(path).read() |
| pq.write_table(table, path / "output.parquet") |
| |
| |
| def test_dataset_read_dictionary(tempdir): |
| path = tempdir / "ARROW-3325-dataset" |
| t1 = pa.table([[util.rands(10) for i in range(5)] * 10], names=['f0']) |
| t2 = pa.table([[util.rands(10) for i in range(5)] * 10], names=['f0']) |
| pq.write_to_dataset(t1, root_path=str(path)) |
| pq.write_to_dataset(t2, root_path=str(path)) |
| |
| result = pq.ParquetDataset( |
| path, read_dictionary=['f0']).read() |
| |
| # The order of the chunks is non-deterministic |
| ex_chunks = [t1[0].chunk(0).dictionary_encode(), |
| t2[0].chunk(0).dictionary_encode()] |
| |
| assert result[0].num_chunks == 2 |
| c0, c1 = result[0].chunk(0), result[0].chunk(1) |
| if c0.equals(ex_chunks[0]): |
| assert c1.equals(ex_chunks[1]) |
| else: |
| assert c0.equals(ex_chunks[1]) |
| assert c1.equals(ex_chunks[0]) |
| |
| |
| def test_read_table_schema(tempdir): |
| # test that schema keyword is passed through in read_table |
| table = pa.table({'a': pa.array([1, 2, 3], pa.int32())}) |
| pq.write_table(table, tempdir / "data1.parquet") |
| pq.write_table(table, tempdir / "data2.parquet") |
| |
| schema = pa.schema([('a', 'int64')]) |
| |
| # reading single file (which is special cased in the code) |
| result = pq.read_table(tempdir / "data1.parquet", schema=schema) |
| expected = pa.table({'a': [1, 2, 3]}, schema=schema) |
| assert result.equals(expected) |
| |
| # reading multiple fields |
| result = pq.read_table(tempdir, schema=schema) |
| expected = pa.table({'a': [1, 2, 3, 1, 2, 3]}, schema=schema) |
| assert result.equals(expected) |
| |
| result = pq.ParquetDataset(tempdir, schema=schema) |
| expected = pa.table({'a': [1, 2, 3, 1, 2, 3]}, schema=schema) |
| assert result.read().equals(expected) |
| |
| |
| def test_read_table_duplicate_column_selection(tempdir): |
| # test that duplicate column selection gives duplicate columns |
| table = pa.table({'a': pa.array([1, 2, 3], pa.int32()), |
| 'b': pa.array([1, 2, 3], pa.uint8())}) |
| pq.write_table(table, tempdir / "data.parquet") |
| |
| result = pq.read_table(tempdir / "data.parquet", columns=['a', 'a']) |
| expected_schema = pa.schema([('a', 'int32'), ('a', 'int32')]) |
| |
| assert result.column_names == ['a', 'a'] |
| assert result.schema == expected_schema |
| |
| |
| def test_dataset_partitioning(tempdir): |
| import pyarrow.dataset as ds |
| |
| # create small dataset with directory partitioning |
| root_path = tempdir / "test_partitioning" |
| (root_path / "2012" / "10" / "01").mkdir(parents=True) |
| |
| table = pa.table({'a': [1, 2, 3]}) |
| pq.write_table( |
| table, str(root_path / "2012" / "10" / "01" / "data.parquet")) |
| |
| # This works with new dataset API |
| |
| # read_table |
| part = ds.partitioning(field_names=["year", "month", "day"]) |
| result = pq.read_table( |
| str(root_path), partitioning=part) |
| assert result.column_names == ["a", "year", "month", "day"] |
| |
| result = pq.ParquetDataset( |
| str(root_path), partitioning=part).read() |
| assert result.column_names == ["a", "year", "month", "day"] |
| |
| |
| def test_parquet_dataset_new_filesystem(tempdir): |
| # Ensure we can pass new FileSystem object to ParquetDataset |
| table = pa.table({'a': [1, 2, 3]}) |
| pq.write_table(table, tempdir / 'data.parquet') |
| filesystem = SubTreeFileSystem(str(tempdir), LocalFileSystem()) |
| dataset = pq.ParquetDataset('.', filesystem=filesystem) |
| result = dataset.read() |
| assert result.equals(table) |
| |
| |
| def test_parquet_dataset_partitions_piece_path_with_fsspec(tempdir): |
| # ARROW-10462 ensure that on Windows we properly use posix-style paths |
| # as used by fsspec |
| fsspec = pytest.importorskip("fsspec") |
| filesystem = fsspec.filesystem('file') |
| table = pa.table({'a': [1, 2, 3]}) |
| pq.write_table(table, tempdir / 'data.parquet') |
| |
| # pass a posix-style path (using "/" also on Windows) |
| path = str(tempdir).replace("\\", "/") |
| dataset = pq.ParquetDataset( |
| path, filesystem=filesystem) |
| # ensure the piece path is also posix-style |
| expected = path + "/data.parquet" |
| assert dataset.fragments[0].path == expected |
| |
| |
| def test_parquet_write_to_dataset_exposed_keywords(tempdir): |
| table = pa.table({'a': [1, 2, 3]}) |
| path = tempdir / 'partitioning' |
| |
| paths_written = [] |
| |
| def file_visitor(written_file): |
| paths_written.append(written_file.path) |
| |
| basename_template = 'part-{i}.parquet' |
| |
| pq.write_to_dataset(table, path, partitioning=["a"], |
| file_visitor=file_visitor, |
| basename_template=basename_template) |
| |
| expected_paths = { |
| path / '1' / 'part-0.parquet', |
| path / '2' / 'part-0.parquet', |
| path / '3' / 'part-0.parquet' |
| } |
| paths_written_set = set(map(pathlib.Path, paths_written)) |
| assert paths_written_set == expected_paths |
| |
| |
| @pytest.mark.parametrize("write_dataset_kwarg", ( |
| ("create_dir", True), |
| ("create_dir", False), |
| )) |
| def test_write_to_dataset_kwargs_passed(tempdir, write_dataset_kwarg): |
| """Verify kwargs in pq.write_to_dataset are passed onto ds.write_dataset""" |
| import pyarrow.dataset as ds |
| |
| table = pa.table({"a": [1, 2, 3]}) |
| path = tempdir / 'out.parquet' |
| |
| signature = inspect.signature(ds.write_dataset) |
| key, arg = write_dataset_kwarg |
| |
| # kwarg not in pq.write_to_dataset, but will be passed to ds.write_dataset |
| assert key not in inspect.signature(pq.write_to_dataset).parameters |
| assert key in signature.parameters |
| |
| with mock.patch.object(ds, "write_dataset", autospec=True)\ |
| as mock_write_dataset: |
| pq.write_to_dataset(table, path, **{key: arg}) |
| _name, _args, kwargs = mock_write_dataset.mock_calls[0] |
| assert kwargs[key] == arg |
| |
| |
| @pytest.mark.pandas |
| def test_write_to_dataset_category_observed(tempdir): |
| # if we partition on a categorical variable with "unobserved" categories |
| # (values present in the dictionary, but not in the actual data) |
| # ensure those are not creating empty files/directories |
| df = pd.DataFrame({ |
| "cat": pd.Categorical(["a", "b", "a"], categories=["a", "b", "c"]), |
| "col": [1, 2, 3] |
| }) |
| table = pa.table(df) |
| path = tempdir / "dataset" |
| pq.write_to_dataset( |
| table, tempdir / "dataset", partition_cols=["cat"] |
| ) |
| subdirs = [f.name for f in path.iterdir() if f.is_dir()] |
| assert len(subdirs) == 2 |
| assert "cat=c" not in subdirs |