uimaj-core/src/test/java/org/apache/uima/jcas/test/JCasTest.java

/*
 * Licensed to the Apache Software Foundation (ASF) under one
 * or more contributor license agreements.  See the NOTICE file
 * distributed with this work for additional information
 * regarding copyright ownership.  The ASF licenses this file
 * to you under the Apache License, Version 2.0 (the
 * "License"); you may not use this file except in compliance
 * with the License.  You may obtain a copy of the License at
 * 
 *   http://www.apache.org/licenses/LICENSE-2.0
 * 
 * Unless required by applicable law or agreed to in writing,
 * software distributed under the License is distributed on an
 * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
 * KIND, either express or implied.  See the License for the
 * specific language governing permissions and limitations
 * under the License.
 */

package org.apache.uima.jcas.test;

import java.util.Arrays;
import java.util.Iterator;
import java.util.PrimitiveIterator.OfInt;

import org.apache.uima.UIMARuntimeException;
import org.apache.uima.cas.CAS;
import org.apache.uima.cas.CASException;
import org.apache.uima.cas.CASRuntimeException;
import org.apache.uima.cas.FSIndex;
import org.apache.uima.cas.FSIndexRepository;
import org.apache.uima.cas.FSIterator;
import org.apache.uima.cas.FeatureStructure;
import org.apache.uima.cas.Type;
import org.apache.uima.cas.TypeSystem;
import org.apache.uima.cas.impl.CASImpl;
import org.apache.uima.cas.impl.LowLevelCAS;
import org.apache.uima.cas.impl.LowLevelIndexRepository;
import org.apache.uima.cas.impl.TypeSystemImpl;
import org.apache.uima.jcas.JCas;
import org.apache.uima.jcas.JFSIndexRepository;
import org.apache.uima.jcas.cas.BooleanArray;
import org.apache.uima.jcas.cas.ByteArray;
import org.apache.uima.jcas.cas.DoubleArray;
import org.apache.uima.jcas.cas.EmptyFSList;
import org.apache.uima.jcas.cas.EmptyFloatList;
import org.apache.uima.jcas.cas.EmptyIntegerList;
import org.apache.uima.jcas.cas.EmptyStringList;
import org.apache.uima.jcas.cas.FSArray;
import org.apache.uima.jcas.cas.FSList;
import org.apache.uima.jcas.cas.FloatArray;
import org.apache.uima.jcas.cas.FloatList;
import org.apache.uima.jcas.cas.IntegerArray;
import org.apache.uima.jcas.cas.IntegerArrayList;
import org.apache.uima.jcas.cas.IntegerList;
import org.apache.uima.jcas.cas.LongArray;
import org.apache.uima.jcas.cas.NonEmptyFSList;
import org.apache.uima.jcas.cas.NonEmptyFloatList;
import org.apache.uima.jcas.cas.NonEmptyIntegerList;
import org.apache.uima.jcas.cas.NonEmptyStringList;
import org.apache.uima.jcas.cas.ShortArray;
import org.apache.uima.jcas.cas.StringArray;
import org.apache.uima.jcas.cas.StringList;
import org.apache.uima.jcas.cas.TOP;
import org.apache.uima.jcas.tcas.Annotation;
import org.apache.uima.resource.metadata.impl.TypeSystemDescription_impl;
import org.apache.uima.test.junit_extension.JUnitExtension;
import org.apache.uima.util.CasCreationUtils;

import aa.ConcreteType;
import aa.Root;
import junit.framework.TestCase;
import x.y.z.EndOfSentence;
import x.y.z.Sentence;
import x.y.z.Token;

/**
 * Class comment for CASTest.java goes here.
 * 
 */
public class JCasTest extends TestCase {

	private CAS cas;

	private JCas jcas;

//	private TypeSystem ts;

	public EndOfSentence endOfSentenceInstance;

	/**
   * Constructor for CASTest.
   * 
   * @param arg0
   */
	public JCasTest(String arg0) {
		super(arg0);
	}

	public void setUp() throws Exception {
		try {
			try {
				this.cas = CASInitializer.initCas(new CASTestSetup(), null);
//				this.ts = this.cas.getTypeSystem();
				this.jcas = cas.getJCas();
				endOfSentenceInstance = new EndOfSentence(jcas);
			} catch (Exception e1) {
				checkOkMissingImport(e1);
			}
		} catch (Exception e) {
			JUnitExtension.handleException(e);
		}
	}

	public void checkOkMissingImport(Exception e1) {
		if (e1 instanceof CASRuntimeException) {
			System.out.print("setup caught CAS Exception with message: ");
			String m = e1.getMessage();
			System.out.println(m);
			assertEquals("The JCas cannot be initialized.  The following errors occurred: "
			    + "\nUnable to find required getPlainRef method for JCAS type aa.Root with return type of org.apache.uima.jcas.cas.TOP."
			    + "\nUnable to find required setPlainRef method for JCAS type aa.Root with argument type of org.apache.uima.jcas.cas.TOP.\n", m);
//			if (!m
//					.equals("Error initializing JCas: Error: can't access feature information from CAS in initializing JCas type: aa.Root, feature: testMissingImport\n")) {
//				assertTrue(false);
//			}
		} else
			assertTrue(false);
	}

	public void checkExpectedBadCASError(Exception e1, String err) {
		if (e1 instanceof UIMARuntimeException) {
			UIMARuntimeException e = (UIMARuntimeException) e1;
			System.out.print("\nCaught CAS Exception with message: ");
			String m = e1.getMessage();
			System.out.println(m);
			if (!(e.getMessageKey().equals(err))) {
				assertTrue(false);
			}
		} else
			assertTrue(false);
	}

	public void tearDown() {
		this.cas = null;
//		this.ts = null;
		this.jcas = null;
		this.endOfSentenceInstance = null;
	}

	public void testMissingFeatureInCas() throws Exception {
		try {
			// jcasCasMisMatch(CASTestSetup.BAD_MISSING_FEATURE_IN_CAS, CASException.JCAS_INIT_ERROR);
//			CAS localCas;
//			JCas localJcas = null;
//			boolean errFound = false;
			try {
			  // error happens during setup
				/*localCas =*/ CASInitializer.initCas(new CASTestSetup(CASTestSetup.BAD_MISSING_FEATURE_IN_CAS), null);
			} catch (CASRuntimeException e) {
				assertTrue(e.getMessageKey().equals(CASException.JCAS_INIT_ERROR));
			}
		} catch (Exception e) {
			JUnitExtension.handleException(e);
		}
	}

	public void testChangedFType() throws Exception {
		try {
			jcasCasMisMatch(CASTestSetup.BAD_CHANGED_FEATURE_TYPE, UIMARuntimeException.INTERNAL_ERROR);
		} catch (Exception e) {
			JUnitExtension.handleException(e);
		}
	}

	public void jcasCasMisMatch(int testId, String expectedErr) throws Exception {
		try {
//			CAS localCas;
//			JCas localJcas;
			boolean errFound = false;
			try {
				/*localCas = */CASInitializer.initCas(new CASTestSetup(testId), null);
//				ts = this.cas.getTypeSystem();
//				try {
//					localJcas = localCas.getJCas();
//				} catch (Exception e1) {
//					checkExpectedBadCASError(e1, expectedErr);
//					errFound = true;
//				}
			} catch (Exception e) {
		    checkExpectedBadCASError(e, expectedErr);
		    errFound = true;
			}
			assertTrue(errFound);
		} catch (Exception e) {
			JUnitExtension.handleException(e);
		}
	}

	public void testIteratorCopy() {
		Annotation something = new Annotation(jcas);
		something.addToIndexes();

		JFSIndexRepository ir = jcas.getJFSIndexRepository();
		FSIterator<Annotation> i1 = ir.getAnnotationIndex().iterator();
		FSIterator<Annotation> i2 = i1.copy();
		FSIterator<Annotation> i3 = i2.copy();
		assertTrue(i3 != null);
	}

	public void testGetFSIndexRepository() throws Exception {
		try {
			FSIndexRepository ir = jcas.getFSIndexRepository();
			LowLevelIndexRepository ll_ir = jcas.getLowLevelIndexRepository();

			assertTrue(ir != null);
			assertTrue(ir == cas.getIndexRepository());
			assertTrue(ll_ir != null);
			assertTrue(ll_ir == cas.getLowLevelCAS().ll_getIndexRepository());
		} catch (Exception e) {
			JUnitExtension.handleException(e);
		}
	}

	public void testMisc() throws Exception {
		try {
			try {
				jcas.getRequiredType("uima.tcas.Annotation");
			} catch (CASException e) {
				assertTrue(false);
			}
			try {
				jcas.getRequiredType("missing.type");
				assertTrue(false);
			} catch (CASException e1) {
				System.out.print("This error msg expected: ");
				System.out.println(e1);
			}

			try {
				jcas.getRequiredFeature(jcas.getCasType(Annotation.type), "begin");
			} catch (CASException e2) {
				assertTrue(false);
			}
			try {
				jcas.getRequiredFeature(jcas.getCasType(Annotation.type), "Begin");
				assertTrue(false);
			} catch (CASException e2) {
				System.out.print("This error msg expected: ");
				System.out.println(e2);
			}
			CAS localCas = jcas.getCas();
			assertTrue(localCas == this.cas);
			LowLevelCAS ll_cas = jcas.getLowLevelCas();
			assertTrue(ll_cas == this.cas);
			CASImpl casImpl = jcas.getCasImpl();
			assertTrue(casImpl == this.cas);

			/* Annotation a1 =*/ new Annotation(jcas, 4, 5);
		} catch (Exception e) {
			JUnitExtension.handleException(e);
		}
	}

	public void testJCasAccessing() throws Exception {
		try {
			Root r1 = new Root(jcas);
			r1.setArrayFloat(new FloatArray(jcas, 2));
			r1.setArrayFloat(0, (float) 3.0);
			r1.setArrayFloat(1, (float) 2.5);
			assertTrue(3.0 == r1.getArrayFloat(0));
			assertTrue(2.5 == r1.getArrayFloat(1));

			Root r2 = new Root(jcas);
			r2.setArrayRef(new FSArray(jcas, 3));
			EndOfSentence eos1 = new EndOfSentence(jcas);
			EndOfSentence eos2 = new EndOfSentence(jcas);

			r2.setArrayRef(0, eos1);
			r2.setArrayRef(1, eos2);
			assertTrue(r2.getArrayRef(0).equals(eos1));
			assertTrue(r2.getArrayRef(1).equals(eos2));

			r2.setArrayInt(new IntegerArray(jcas, 1));
			r2.setArrayInt(0, 17);
			assertTrue(r2.getArrayInt(0) == 17);
			IntegerArray ia = r2.getArrayInt();
			assertTrue(ia.get(0) == 17);

			r2.setArrayString(new StringArray(jcas, 2));
			r2.setArrayString(0, "zero");
			r2.setArrayString(1, "one");
			assertTrue(r2.getArrayString(0).equals("zero"));
			assertTrue(r2.getArrayString(1).equals("one"));

			// error paths
			// array out of bounds
			boolean caught = false;
			try {
				r2.getArrayString(2);
			} catch (ArrayIndexOutOfBoundsException e) {
			  caught = true;
			}
			assertTrue(caught);
			caught = false;
			try {
				r2.setArrayString(-1, "should fail");
			} catch (ArrayIndexOutOfBoundsException e) {
				caught = true;
			}
      assertTrue(caught);

      // float values
      r1 = new Root(jcas);
      r1.setPlainFloat(1247.3F);
      r1.setArrayFloat(new FloatArray(jcas, 3));
      r1.setArrayFloat(2, 321.4F);
      assertEquals(1247.3F, r1.getPlainFloat());
      assertEquals(321.4F, r1.getArrayFloat(2));
      
      // double values
      r1 = new Root(jcas);
      r1.setPlainDouble(2247.3D);
      r1.setArrayDouble(new DoubleArray(jcas, 3));
      r1.setArrayDouble(2, 421.4D);
      assertEquals(2247.3D, r1.getPlainDouble());
      assertEquals(421.4D, r1.getArrayDouble(2));
      
			// null values
			r2.setArrayString(0, null);
			r2.setArrayRef(0, null);
			r2.setArrayRef(null);
			r2.setArrayString(null);
			r2.setPlainRef(null);
			r2.setPlainString(null);
			assertTrue(null == r2.getPlainString());
			assertTrue(null == r2.getPlainRef());
			caught = false;
			try {
				r2.getArrayRef(0);
			} catch (NullPointerException e) {
			  caught = true;
			}
			assertTrue(caught);
			assertTrue(null == r2.getArrayString());
			assertTrue(null == r2.getArrayRef());

			r2.addToIndexes();
			r1.addToIndexes();

			JFSIndexRepository jfsi = jcas.getJFSIndexRepository();
			FSIndex<Root> fsi1 = jfsi.getIndex("all", Root.type);
			FSIterator<Root> fsit1 = fsi1.iterator();
			assertTrue(fsit1.isValid());
			Root[] fetched = new Root[2];
			
			fetched[0] = (Root) fsit1.get();
      fsit1.moveToNext();
      assertTrue(fsit1.isValid());

      fetched[1] = (Root) fsit1.get();
      assertTrue(fsit1.isValid());
      fsit1.moveToNext();
      assertFalse(fsit1.isValid());
			
      // is bag index, order may be arbitrary
			assertTrue((fetched[0] == r1 && fetched[1] == r2) ||
			           (fetched[1] == r1 && fetched[0] == r2));
			
			
			/*
       * while (fsit1.isValid()) { System.out.println("Iterator getting: " +
       * fsit1.get().toString()); fsit1.moveToNext(); }
       */

			// test new objects with old iterators
			// NOT SUPPORTED
			// JFSIndex oIndex = jcas.getIndex("all");
			// JFSIterator oI = oIndex.iterator();
			// assertTrue(oI.isValid());
			// assertTrue(r2 == oI.get());
			// oI.moveToNext();
			// assertTrue(oI.isValid());
			// assertTrue(r1 == oI.get());
			((CASImpl)cas).traceFSflush();
		} catch (Exception e) {
			JUnitExtension.handleException(e);
		}
	}

	/*
   * Tests for Memory Leaks and Performance
   * 
   * Core: randomly creating lots of CAS objects of all kinds with a simple computation for what
   * they should contain, followed by iterating over the objects and checking they contain the
   * proper values. Measure heap use and time. Heap use measure: System.gc();
   * System.out.println("FreeMem: " + Runtime.getRuntime().freeMemory()); Creating cas objects: Use
   * random number to pick one of n types of objects to create For each object type, create specific
   * field values based on that objects' ID in ID-Hash sense. System.identityHashCode(object)
   * 
   * Timing: System.currentTimeMillis()
   * 
   */

	public void testRandom() throws Exception {
		try {
			// System.out.print("Making Random: ");
			for (int i = 0; i < 50; i++) {
				root1.make();
				// System.out.print("m");
			}
			JFSIndexRepository jir = jcas.getJFSIndexRepository();
			FSIterator<Root> it = jir.<Root>getIndex("all", Root.type).iterator();
			// System.out.print("\nTesting Random: ");
			while (it.isValid()) {
				root1.test(it.get());
				// System.out.print("t");
				it.moveToNext();
			}
		} catch (Exception e) {
			JUnitExtension.handleException(e);
		}
	}

	static interface MakeAndTest {
		public void make();

		public void test(Object o);
	}

	MakeAndTest root1 = new MakeAndTest() {
		public void make() {
			Root r1 = new Root(jcas);
			// Note: Java 7 can return -ve hashcodes so must avoid -ve remainders.
			int k = System.identityHashCode(r1);
			int imax = 1 + Math.abs(k % 10);
			r1.setArrayFloat(new FloatArray(jcas, imax));
			for (int i = 0; i < imax; i++) {
				r1.setArrayFloat(i, (float) k / (i + 1));
			}
			int imaxFS = 1 + Math.abs((k % 3));
			r1.setArrayRef(new FSArray(jcas, imaxFS));
			for (int i = 1; i < imaxFS; i++) {
				r1.setArrayRef(i, endOfSentenceInstance);
			}
			r1.setPlainString("" + k);
			r1.addToIndexes();
		}

		public void test(Object o1) {
			assertTrue(o1 instanceof Root);
			Root r1 = (Root) o1;
			int k = System.identityHashCode(r1);
			int imax = 1 + Math.abs(k % 10);
			for (int i = 0; i < imax; i++) {
				assertTrue(r1.getArrayFloat(i) == ((float) k / (i + 1)));
			}
			int imaxFS = 1 + Math.abs(k % 3);
			for (int i = 1; i < imaxFS; i++) {
				assertTrue(endOfSentenceInstance == r1.getArrayRef(i));
			}
			assertTrue(r1.getPlainString().equals("" + k));
		}
	};

	public void test2CASs() throws Exception {
		try {
			try {
				CAS cas2 = CASInitializer.initCas(new CASTestSetup(), null);
//				TypeSystem ts2 = cas2.getTypeSystem();
				JCas jcas2 = cas2.getJCas();
				if (TypeSystemImpl.IS_DISABLE_TYPESYSTEM_CONSOLIDATION) {
  				assertTrue(jcas.getCasType(Annotation.type).equals(jcas2.getCasType(Annotation.type)));
  				assertFalse(jcas.getCasType(Annotation.type) == jcas2.getCasType(Annotation.type));
				} else {
          assertTrue(jcas.getCasType(Annotation.type) == jcas2.getCasType(Annotation.type));
				}
			} catch (Exception e) {
				checkOkMissingImport(e);
			}
		} catch (Exception e) {
			JUnitExtension.handleException(e);
		}
	}

	public void testAbstract() throws Exception {
		try {
			boolean caughtExc = true;
			try {
				ConcreteType concreteType = new ConcreteType(jcas);
				concreteType.setAbstractInt(7);
				concreteType.setConcreteString("sss");
				assertTrue(7 == concreteType.getAbstractInt());
				assertTrue("sss".equals(concreteType.getConcreteString()));

				jcas.getCas().createFS(jcas.getCas().getTypeSystem().getType("aa.AbstractType"));

			} catch (CASRuntimeException e) {
				caughtExc = false;
				// assertTrue(e.getError() == CASRuntimeException.JCAS_MAKING_ABSTRACT_INSTANCE);
				System.out.print("This error msg expected: ");
				System.out.println(e);
			}
			assertTrue(caughtExc);
		} catch (Exception e) {
			JUnitExtension.handleException(e);
		}
	}

	public void testNonJCasCoveredByJCas() throws Exception {
		try {
			CAS localCas = jcas.getCas();
			Type subTok = localCas.getTypeSystem().getType("SubToken");
			Annotation a1 = new Annotation(jcas);
			a1.addToIndexes();
			FeatureStructure f1 = localCas.createFS(subTok);
			localCas.getIndexRepository().addFS(f1);

			JFSIndexRepository ir = jcas.getJFSIndexRepository();
			FSIndex<Annotation> index = ir.getAnnotationIndex();
			FSIterator<Annotation> it = index.iterator();

			try {

				while (it.isValid()) {
          Object o = it.get();
					assertTrue(o instanceof Annotation);
					it.moveToNext();
				}
			} catch (Exception e) {
				System.out.println("failed: nonJCasCovered by JCas");
			}
		} catch (Exception e) {
			JUnitExtension.handleException(e);
		}
	}

	public void testFSListNotPromoted() throws Exception {
		try {
			CAS localCas = jcas.getCas();
			TypeSystem ts = localCas.getTypeSystem();
			Type fsl = ts.getType("uima.cas.NonEmptyFSList");
			FeatureStructure fs = localCas.createFS(fsl);
			assertTrue(fs instanceof NonEmptyFSList);
		} catch (Exception e) {
			JUnitExtension.handleException(e);
		}
	}

	public void testCreateFSafterReset() throws Exception {
		try {
//			CAS localCas = jcas.getCas();
			cas.reset();
			TypeSystem ts = cas.getTypeSystem();
			Type fsl = ts.getType("uima.cas.NonEmptyFSList");
			cas.createFS(fsl);
			assertTrue(true);
		} catch (Exception e) {
			JUnitExtension.handleException(e);
		}
	}

	public void testIteratorGetsJCasType() throws Exception {
		try {
			Token tok1 = new Token(jcas);
			tok1.addToIndexes();
			FSIterator<Token> it = jcas.getJFSIndexRepository().<Token>getIndex("all", Token.type).iterator();
			while (it.hasNext()) {
				Token token = (Token) it.next();
				token.addToIndexes(); // something to do to keep Java from optimizing this away.
			}
		} catch (Exception e) {
			JUnitExtension.handleException(e);
		}
	}

	// THis test is Java impl specific, works with Oracle Java 7 and 8, not tested with other Javas
	// uncomment to run, but normally commented out.
//  public void testSubiterator() throws Exception {
//    for (int i = 0; i < 5; i++) {   // tokens: 0,1,  1,3   2,5,  3,7  4,9
//      Token tok1 = new Token(jcas, i, 1 + 2*i);
//      tok1.addToIndexes();
//    }
//    FSIndexRepositoryMgr irm = (FSIndexRepositoryMgr)jcas.getIndexRepository();
//    TypeSystem ts = cas.getTypeSystem();
//    LinearTypeOrder lo = irm.getDefaultTypeOrder();
//    Type tokenType = ts.getType("x.y.z.Token");
//    Type sentenceType = ts.getType("x.y.z.Sentence");
//    Type annotType = ts.getType(CAS.TYPE_NAME_ANNOTATION);
//
//    boolean java7 = System.getProperty("java.version").startsWith("1.7");
//    
//    /*********************************************************
//     * Surprise: Type Order is different between Java 7 and 8
//     *********************************************************/
//    assertEquals(java7, lo.lessThan(annotType, tokenType));   // annotation < token for java 7, opposite for Java 8
//    assertTrue(lo.lessThan(sentenceType, tokenType));
//    
//    
//    /********************************************************
//     * This iterator is always empty 
//     ********************************************************/
//    Iterator<Annotation> iter = jcas.getAnnotationIndex(Token.type).subiterator(new Token(jcas, 2, 5));
//    assertFalse(iter.hasNext()); // because is empty because of definition of where to start, step #2 (see above)
//
//    /*********************************************************
//     * Surprise: This iterator is empty only for Java 8
//     *   due to type ordering
//     *********************************************************/
//    iter = jcas.getAnnotationIndex(Token.type).subiterator(new Annotation(jcas, 2, 5));
//    assertEquals(java7, iter.hasNext()); // Ok for java 7, empty for java 8 because of type order difference 
//
//    /*********************************************************
//     * This iterator is never empty because type order for
//     * Sentence is before Token in both Java 7 and 8
//     *********************************************************/
//    iter = jcas.getAnnotationIndex(Token.type).subiterator(new Sentence(jcas, 2, 5));
//    assertTrue(iter.hasNext());    // OK for both, because Sentence is before Token in both Java 7 and 8    
//  }  
  
	public void testGetNthFSList() throws Exception {
		try {
			Token tok1 = new Token(jcas);
			Token tok2 = new Token(jcas);

			NonEmptyFSList<Token> fsList1 = new NonEmptyFSList<>(jcas);
			fsList1.setHead(tok2);
			fsList1.setTail(new EmptyFSList<>(jcas));
			NonEmptyFSList<Token> fsList = new NonEmptyFSList<>(jcas);
			fsList.setHead(tok1);
			fsList.setTail(fsList1);
			/* EmptyFSList emptyFsList = */ new EmptyFSList<Token>(jcas);

//			try {
//				emptyFsList.getNthElement(0);
//				assertTrue(false); // error if we get here
//			} catch (CASRuntimeException e) {
//				assertTrue(e.getMessageKey().equals(CASRuntimeException.JCAS_GET_NTH_ON_EMPTY_LIST));
//				System.out.print("Expected Error: ");
//				System.out.println(e.getMessage());
//			}

			try {
				fsList.getNthElement(-1);
				assertTrue(false); // error if we get here
			} catch (CASRuntimeException e) {
				assertTrue(e.getMessageKey().equals(CASRuntimeException.JCAS_GET_NTH_NEGATIVE_INDEX));
				System.out.print("Expected Error: ");
				System.out.println(e.getMessage());
			}

			try {
				fsList.getNthElement(2);
				assertTrue(false); // error if we get here
			} catch (CASRuntimeException e) {
				assertTrue(e.getMessageKey().equals(CASRuntimeException.JCAS_GET_NTH_PAST_END));
				System.out.print("Expected Error: ");
				System.out.println(e.getMessage());
			}

			assertTrue(tok1 == fsList.getNthElement(0));
			assertTrue(tok2 == fsList.getNthElement(1));
		} catch (Exception e) {
			JUnitExtension.handleException(e);
		}
	}

	public void testGetNthIntegerList() throws Exception {
		try {

			NonEmptyIntegerList intList1 = new NonEmptyIntegerList(jcas);
			intList1.setHead(2);
			intList1.setTail(new EmptyIntegerList(jcas));
			NonEmptyIntegerList intList = new NonEmptyIntegerList(jcas);
			intList.setHead(1);
			intList.setTail(intList1);
			EmptyIntegerList emptyFsList = new EmptyIntegerList(jcas);

			try {
				emptyFsList.getNthElement(0);
				assertTrue(false); // error if we get here
			} catch (CASRuntimeException e) {
				assertTrue(e.getMessageKey().equals(CASRuntimeException.JCAS_GET_NTH_ON_EMPTY_LIST));
				System.out.print("Expected Error: ");
				System.out.println(e.getMessage());
			}

			try {
				intList.getNthElement(-1);
				assertTrue(false); // error if we get here
			} catch (CASRuntimeException e) {
				assertTrue(e.getMessageKey().equals(CASRuntimeException.JCAS_GET_NTH_NEGATIVE_INDEX));
				System.out.print("Expected Error: ");
				System.out.println(e.getMessage());
			}

			try {
				intList.getNthElement(2);
				assertTrue(false); // error if we get here
			} catch (CASRuntimeException e) {
				assertTrue(e.getMessageKey().equals(CASRuntimeException.JCAS_GET_NTH_PAST_END));
				System.out.print("Expected Error: ");
				System.out.println(e.getMessage());
			}

			assertTrue(1 == intList.getNthElement(0));
			assertTrue(2 == intList.getNthElement(1));
		} catch (Exception e) {
			JUnitExtension.handleException(e);
		}
	}

	public void testGetNthFloatList() throws Exception {
		try {

			NonEmptyFloatList floatList1 = new NonEmptyFloatList(jcas);
			floatList1.setHead((float) 2.0);
			floatList1.setTail(new EmptyFloatList(jcas));
			NonEmptyFloatList floatList = new NonEmptyFloatList(jcas);
			floatList.setHead((float) 1.0);
			floatList.setTail(floatList1);
			EmptyFloatList emptyFsList = new EmptyFloatList(jcas);

			try {
				emptyFsList.getNthElement(0);
				assertTrue(false); // error if we get here
			} catch (CASRuntimeException e) {
				assertTrue(e.getMessageKey().equals(CASRuntimeException.JCAS_GET_NTH_ON_EMPTY_LIST));
				System.out.print("Expected Error: ");
				System.out.println(e.getMessage());
			}

			try {
				floatList.getNthElement(-1);
				assertTrue(false); // error if we get here
			} catch (CASRuntimeException e) {
				assertTrue(e.getMessageKey().equals(CASRuntimeException.JCAS_GET_NTH_NEGATIVE_INDEX));
				System.out.print("Expected Error: ");
				System.out.println(e.getMessage());
			}

			try {
				floatList.getNthElement(2);
				assertTrue(false); // error if we get here
			} catch (CASRuntimeException e) {
				assertTrue(e.getMessageKey().equals(CASRuntimeException.JCAS_GET_NTH_PAST_END));
				System.out.print("Expected Error: ");
				System.out.println(e.getMessage());
			}

			assertTrue(1.0 == floatList.getNthElement(0));
			assertTrue(2.0 == floatList.getNthElement(1));
		} catch (Exception e) {
			JUnitExtension.handleException(e);
		}
	}

	public void testGetNthStringList() throws Exception {
		try {
			NonEmptyStringList stringList1 = new NonEmptyStringList(jcas);
			stringList1.setHead("2");
			stringList1.setTail(new EmptyStringList(jcas));
			NonEmptyStringList stringList = new NonEmptyStringList(jcas);
			stringList.setHead("1");
			stringList.setTail(stringList1);
			EmptyStringList emptyFsList = new EmptyStringList(jcas);

			try {
				emptyFsList.getNthElement(0);
				assertTrue(false); // error if we get here
			} catch (CASRuntimeException e) {
				assertTrue(e.getMessageKey().equals(CASRuntimeException.JCAS_GET_NTH_ON_EMPTY_LIST));
				System.out.print("Expected Error: ");
				System.out.println(e.getMessage());
			}

			try {
				stringList.getNthElement(-1);
				assertTrue(false); // error if we get here
			} catch (CASRuntimeException e) {
				assertTrue(e.getMessageKey().equals(CASRuntimeException.JCAS_GET_NTH_NEGATIVE_INDEX));
				System.out.print("Expected Error: ");
				System.out.println(e.getMessage());
			}

			try {
				stringList.getNthElement(2);
				assertTrue(false); // error if we get here
			} catch (CASRuntimeException e) {
				assertTrue(e.getMessageKey().equals(CASRuntimeException.JCAS_GET_NTH_PAST_END));
				System.out.print("Expected Error: ");
				System.out.println(e.getMessage());
			}

			assertTrue("1".equals(stringList.getNthElement(0)));
			assertTrue("2".equals(stringList.getNthElement(1)));
		} catch (Exception e) {
			JUnitExtension.handleException(e);
		}
	}
  
	public void testStringListAPI() {
	  StringList sl = new EmptyStringList(jcas);
	  sl = sl.push("2");
	  sl = sl.push("1");
	  
	  String[] sa = new String[2];
	  int i = 0;
	  for (String s : sl) {
	    sa[i++] = s;
	  }
	  
	  String[] expected = {"1",  "2"};
	  assert(Arrays.equals(expected, sa));
	}
	
	public void testStringArrayAPI() {
	  StringArray sa = new StringArray(jcas, 3);
	  String[] values = {"1", "2", "3"}; 
	  sa.copyFromArray(values, 0, 0, 3);
	  
    int i = 0;
    for (String s : sa) {
      assert(s.equals(values[i++]));
    }
	}

  public void testFSListAPI() {
    FSList<TOP> sl = new EmptyFSList<>(jcas);
    TOP fs1 = new TOP(jcas);
    TOP fs2 = new TOP(jcas);
    sl = sl.push(fs2);
    sl = sl.push(fs1);
   
    TOP[] fss = new TOP[2];
    int i = 0;
    Iterator<TOP> it = sl.iterator();
    while (it.hasNext()) {
      fss[i++] = it.next();
    }
    
    i = 0;   
    for (TOP s : sl) {
      fss[i++] = s;
    }
    
    TOP[] expected = {fs1, fs2};
    assert(Arrays.equals(expected, fss));
  }
	  
  public void testFSArrayAPI() {
    FSArray sa = new FSArray<>(jcas, 2);
    TOP fs1 = new TOP(jcas);
    TOP fs2 = new TOP(jcas);
    TOP[] values = {fs1, fs2}; 
    sa.copyFromArray(values, 0, 0, 2);
    
    int i = 0;
    sa.iterator();
    
    for (Object s : sa) {
      assert(s.equals(values[i++]));
    }
  }
  
  public void testOtherListAPI() {
    // float and integer
    IntegerList sl = new EmptyIntegerList(jcas);
    sl = sl.push(2);
    sl = sl.push(1);
   
    int[] fss = new int[2];
    int i = 0;
    for (int s : sl) {
      fss[i++] = s;
    }
    
    int[] expected = {1, 2};
    assert(Arrays.equals(expected, fss));

    FloatList fl = new EmptyFloatList(jcas);
    fl = fl.push(2.0F);
    fl = fl.push(1.0F);
    float[] fls = new float[2];
    i = 0;
    for (float f : fl) {
      fls[i++] = f;
    }
    
    float[] expectedFloats = {1.0f, 2.0f};
    assert(Arrays.equals(expectedFloats, fls));
    
    BooleanArray boa = new BooleanArray(jcas, 2);
    boa.set(0, true);
    boa.set(1, false);
    boolean[] expectedBa = {true, false};
    i = 0;
    for (boolean bov : boa) {
      assertEquals(expectedBa[i++], bov);
    }

    ByteArray bya = new ByteArray(jcas, 2);
    bya.set(0, (byte)15);
    bya.set(1, (byte)22);
    byte[] expectedBya = {15, 22};
    i = 0;
    for (byte v : bya) {
      assertEquals(expectedBya[i++], v);
    }

    ShortArray sha = new ShortArray(jcas, 2);
    sha.set(0, (short)15);
    sha.set(1, (short)22);
    short[] expectedSha = {15, 22};
    i = 0;
    for (short v : sha) {
      assertEquals(expectedSha[i++], v);
    }

    IntegerArray ina = new IntegerArray(jcas, 2);
    ina.set(0, (int)15);
    ina.set(1, (int)22);
    int[] expectedIna = {15, 22};
    i = 0;
    for (int v : ina) {
      assertEquals(expectedIna[i++], v);
    }
    
    IntegerArrayList inal = new IntegerArrayList(jcas, 2);
    inal.add(15);
    inal.add(22);
    
    OfInt ialit = inal.iterator();
    i = 0;
    while (ialit.hasNext()) {
      assertEquals(expectedIna[i++], ialit.nextInt());
    }
    
    i = 0;
    for (int v : inal) {
      assertEquals(expectedIna[i++], v);
    }
    
    LongArray loa = new LongArray(jcas, 2);
    loa.set(0, (long)15);
    loa.set(1, (long)22);
    long[] expectedLoa = {15, 22};
    i = 0;
    for (long v : loa) {
      assertEquals(expectedLoa[i++], v);
    }
    
    

    DoubleArray doa = new DoubleArray(jcas, 2);
    doa.set(0, (double)15);
    doa.set(1, (double)22);
    Double[] expectedDoa = {15d, 22d};
    i = 0;
    for (double v : doa) {
      assertEquals(expectedDoa[i++], v);
    }
    
  }  
  
  public void testUndefinedType() throws Exception {
    //create jcas with no type system
    JCas localJcas = CasCreationUtils.createCas(new TypeSystemDescription_impl(), null, null).getJCas();
    localJcas.setDocumentText("This is a test.");
    try {
      //this should throw an exception
      localJcas.getCasType(Sentence.type);
      fail(); 
    } catch(CASRuntimeException e) {
      assertEquals(CASRuntimeException.JCAS_TYPE_NOT_IN_CAS, e.getMessageKey());
    }
    //check that this does not leave JCAS in an inconsistent state
    //(a check for bug UIMA-738)
    Iterator<Annotation> iter = localJcas.getAnnotationIndex().iterator();
    assertTrue(iter.hasNext());
    Annotation annot = iter.next();
    assertEquals("This is a test.", annot.getCoveredText());
  }
  

	/*
   * skip this - takes too long private static final int largeN = 10000; public void testPerf()
   * throws Exception { try { long tFs = 0, tJCas = 0, td1 = 0, td2 = 0, tllFs = 0, td3 = 0; long
   * tFsIndex = 0, tJCasIndex = 0, tllFsIndex = 0, td4=0, td5=0, td6=0; long [] timeResults = new
   * long [12]; for (int i = 0; i < 20; i++) { timeResults = innertimingperf(); } for (int i = 0; i <
   * 10; i++) { timeResults = innertimingperf(); System.out.println(timeResults[0] + " " +
   * timeResults[1] + " " + timeResults[2] + " " + timeResults[6] + " " + timeResults[7] + " " +
   * timeResults[8]); tFs += timeResults[0]; tJCas += timeResults[1]; tllFs += timeResults[2]; td1 +=
   * timeResults[3]; td2 += timeResults[4]; td3 += timeResults[5]; tFsIndex += timeResults[6];
   * //System.out.print ("tFsIndex incr = " + timeResults[6]) ; tJCasIndex += timeResults[7];
   * //System.out.println(", tJCasIndex incr = " + timeResults[7]) ; tllFsIndex += timeResults[8];
   * td4 += timeResults[9]; td5 += timeResults[10]; td6 += timeResults[11]; }
   * System.out.println("Timing Test, no indexing, av createFS took: " + tFs/10 + " dummy " + td1);
   * System.out.println("Timing Test, no indexing, av JCas cr took: " + tJCas/10 + " dummy " + td2);
   * System.out.println("Timing Test, no indexing, av llCrFs took: " + tllFs/10 + " dummy " + td3);
   * System.out.println("Timing Test, indexing, av createFS took: " + tFsIndex/10 + " dummy " +
   * td4); System.out.println("Timing Test, indexing, av JCas cr took: " + tJCasIndex/10 + " dummy " +
   * td5); System.out.println("Timing Test, indexing, av llCrFs took: " + tllFsIndex/10 + " dummy " +
   * td6);
   * 
   * assertTrue ((tFs / 2) > tJCas); // JCas time should be over 2x faster than non-JCas } catch
   * (Exception e) {JUnitExtension.handleException(e); } }
   * 
   * private static final boolean DO_CHECKS = true; public long[] innertimingperf() {
   * 
   * long [] times = new long [12]; CAS cas = jcas.getCas(); FSIndexRepository ir =
   * cas.getIndexRepository(); TypeSystem ts = cas.getTypeSystem(); Type tokenType =
   * ts.getType(CASTestSetup.TOKEN_TYPE); // make a lot of FS, without adding to indexes // save in
   * array final FeatureStructure [] results = new FeatureStructure [largeN]; jcas.reset();
   * System.gc(); long startTime = System.currentTimeMillis();
   * 
   * for (int i = 0; i < results.length; i++) { results[i] = cas.createFS(tokenType); } times[0] =
   * System.currentTimeMillis() - startTime; int j = 0; for (int i = 0; i < results.length; i++) {
   * if (results[i].equals(results[0])) j ++; } times[4] = j; // this code an attempt to fool JIT
   * into keeping the results
   * 
   * jcas.reset(); System.gc(); startTime = System.currentTimeMillis(); for (int i = 0; i <
   * results.length; i++) { results[i] = new Token(jcas); } times[1] = System.currentTimeMillis() -
   * startTime; j = 0; for (int i = 0; i < results.length; i++) { if (results[i].equals(results[0]))
   * j ++; } times[3] = j; // this code an attempt to fool JIT into keeping the results // run with
   * low-level jcas.reset(); System.gc(); final int [] iresults = new int[largeN]; int tokenTypeCode =
   * ((TypeImpl)tokenType).getCode(); LowLevelCAS llCas = (LowLevelCAS)cas; LowLevelIndexRepository
   * llir = llCas.ll_getIndexRepository(); startTime = System.currentTimeMillis();
   * 
   * for (int i = 0; i < iresults.length; i++) { iresults[i] = llCas.ll_createFS(tokenTypeCode); }
   * times[2] = System.currentTimeMillis() - startTime; j = 0; for (int i = 0; i < iresults.length;
   * i++) { if (iresults[i] == iresults[0]) j ++; } times[5] = j; // this code an attempt to fool
   * JIT into keeping the results
   * 
   * //***************** // with indexing //***************** jcas.reset(); System.gc(); startTime =
   * System.currentTimeMillis();
   * 
   * for (int i = 0; i < results.length; i++) { results[i] = cas.createFS(tokenType);
   * ir.addFS(results[i]); } times[6] = System.currentTimeMillis() - startTime; j = 0; for (int i =
   * 0; i < results.length; i++) { if (results[i].equals(results[0])) j ++; } times[10] = j; // this
   * code an attempt to fool JIT into keeping the results
   * 
   * jcas.reset(); System.gc(); startTime = System.currentTimeMillis();
   * 
   * for (int i = 0; i < results.length; i++) { results[i] = new Token(jcas);
   * ((Token)results[i]).addToIndexes(); } times[7] = System.currentTimeMillis() - startTime; j = 0;
   * for (int i = 0; i < results.length; i++) { if (results[i].equals(results[0])) j ++; } times[9] =
   * j; // this code an attempt to fool JIT into keeping the results // run with low-level
   * jcas.reset(); System.gc();
   * 
   * startTime = System.currentTimeMillis();
   * 
   * for (int i = 0; i < iresults.length; i++) { iresults[i] = llCas.ll_createFS(tokenTypeCode);
   * llir.ll_addFS(iresults[i], !DO_CHECKS); } times[8] = System.currentTimeMillis() - startTime; j =
   * 0; for (int i = 0; i < iresults.length; i++) { if (iresults[i] == iresults[0]) j ++; }
   * times[11] = j; // this code an attempt to fool JIT into keeping the results return times; }
   */

	/*
   * public void testCreateFS() { // Can create FS of type "Top"
   * assertTrue(this.cas.createFS(this.ts.getType(CAS.TYPE_NAME_TOP)) != null); boolean caughtExc =
   * false; // Can't create int FS. try { this.cas.createFS(this.ts.getType(CAS.TYPE_NAME_INTEGER)); }
   * catch (CASRuntimeException e) { caughtExc = true; assertTrue(e.getError() ==
   * CASRuntimeException.NON_CREATABLE_TYPE); } assertTrue(caughtExc); caughtExc = false; // Can't
   * create array with CAS.createFS(). try {
   * this.cas.createFS(this.ts.getType(CAS.TYPE_NAME_FS_ARRAY)); } catch (CASRuntimeException e) {
   * caughtExc = true; assertTrue(e.getError() == CASRuntimeException.NON_CREATABLE_TYPE); }
   * assertTrue(caughtExc); caughtExc = false; // Can't create array subtype with CAS.createFS(). //
   * try { // this.cas.createFS(this.ts.getType(CASTestSetup.INT_ARRAY_SUB)); // } catch
   * (CASRuntimeException e) { // caughtExc = true; // assertTrue(e.getError() ==
   * CASRuntimeException.NON_CREATABLE_TYPE); // } // assertTrue(caughtExc); }
   * 
   * public void testCreateArrayFS() { // Has its own test class. }
   * 
   * public void testCreateIntArrayFS() { // Has its own test class. }
   * 
   * public void testCreateStringArrayFS() { // Has its own test class. } // public void
   * testCreateFilteredIterator() { // } // // public void testCommitFS() { // } // // public void
   * testGetConstraintFactory() { // } // // public void testCreateFeaturePath() { // } // // public
   * void testGetIndexRepository() { // } // // public void testFs2listIterator() { // } //
   * 
   */
	public static void main(String[] args) {
		junit.textui.TestRunner.run(JCasTest.class);
	}
}