| # Licensed to the Apache Software Foundation (ASF) under one |
| # or more contributor license agreements. See the NOTICE file |
| # distributed with this work for additional information |
| # regarding copyright ownership. The ASF licenses this file |
| # to you under the Apache License, Version 2.0 (the |
| # "License"); you may not use this file except in compliance |
| # with the License. You may obtain a copy of the License at |
| # |
| # http://www.apache.org/licenses/LICENSE-2.0 |
| # |
| # Unless required by applicable law or agreed to in writing, |
| # software distributed under the License is distributed on an |
| # "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY |
| # KIND, either express or implied. See the License for the |
| # specific language governing permissions and limitations |
| # under the License. |
| import logging |
| import os |
| import re |
| import time |
| from datetime import datetime |
| from typing import Any, Dict, List, Optional, Tuple |
| from urllib import parse |
| |
| from sqlalchemy import Column |
| from sqlalchemy.engine import create_engine |
| from sqlalchemy.engine.base import Engine |
| from sqlalchemy.engine.reflection import Inspector |
| from sqlalchemy.engine.url import make_url |
| from sqlalchemy.sql.expression import ColumnClause, Select |
| from werkzeug.utils import secure_filename |
| |
| from superset import app, conf |
| from superset.db_engine_specs.base import BaseEngineSpec |
| from superset.db_engine_specs.presto import PrestoEngineSpec |
| from superset.utils import core as utils |
| |
| QueryStatus = utils.QueryStatus |
| config = app.config |
| |
| tracking_url_trans = conf.get("TRACKING_URL_TRANSFORMER") |
| hive_poll_interval = conf.get("HIVE_POLL_INTERVAL") |
| |
| |
| class HiveEngineSpec(PrestoEngineSpec): |
| """Reuses PrestoEngineSpec functionality.""" |
| |
| engine = "hive" |
| max_column_name_length = 767 |
| |
| # Scoping regex at class level to avoid recompiling |
| # 17/02/07 19:36:38 INFO ql.Driver: Total jobs = 5 |
| jobs_stats_r = re.compile(r".*INFO.*Total jobs = (?P<max_jobs>[0-9]+)") |
| # 17/02/07 19:37:08 INFO ql.Driver: Launching Job 2 out of 5 |
| launching_job_r = re.compile( |
| ".*INFO.*Launching Job (?P<job_number>[0-9]+) out of " "(?P<max_jobs>[0-9]+)" |
| ) |
| # 17/02/07 19:36:58 INFO exec.Task: 2017-02-07 19:36:58,152 Stage-18 |
| # map = 0%, reduce = 0% |
| stage_progress_r = re.compile( |
| r".*INFO.*Stage-(?P<stage_number>[0-9]+).*" |
| r"map = (?P<map_progress>[0-9]+)%.*" |
| r"reduce = (?P<reduce_progress>[0-9]+)%.*" |
| ) |
| |
| @classmethod |
| def patch(cls): |
| from pyhive import hive # pylint: disable=no-name-in-module |
| from superset.db_engines import hive as patched_hive |
| from TCLIService import ( |
| constants as patched_constants, |
| ttypes as patched_ttypes, |
| TCLIService as patched_TCLIService, |
| ) |
| |
| hive.TCLIService = patched_TCLIService |
| hive.constants = patched_constants |
| hive.ttypes = patched_ttypes |
| hive.Cursor.fetch_logs = patched_hive.fetch_logs |
| |
| @classmethod |
| def get_all_datasource_names( |
| cls, database, datasource_type: str |
| ) -> List[utils.DatasourceName]: |
| return BaseEngineSpec.get_all_datasource_names(database, datasource_type) |
| |
| @classmethod |
| def fetch_data(cls, cursor, limit: int) -> List[Tuple]: |
| import pyhive |
| from TCLIService import ttypes |
| |
| state = cursor.poll() |
| if state.operationState == ttypes.TOperationState.ERROR_STATE: |
| raise Exception("Query error", state.errorMessage) |
| try: |
| return super(HiveEngineSpec, cls).fetch_data(cursor, limit) |
| except pyhive.exc.ProgrammingError: |
| return [] |
| |
| @classmethod |
| def create_table_from_csv(cls, form, table): # pylint: disable=too-many-locals |
| """Uploads a csv file and creates a superset datasource in Hive.""" |
| |
| def convert_to_hive_type(col_type): |
| """maps tableschema's types to hive types""" |
| tableschema_to_hive_types = { |
| "boolean": "BOOLEAN", |
| "integer": "INT", |
| "number": "DOUBLE", |
| "string": "STRING", |
| } |
| return tableschema_to_hive_types.get(col_type, "STRING") |
| |
| bucket_path = config["CSV_TO_HIVE_UPLOAD_S3_BUCKET"] |
| |
| if not bucket_path: |
| logging.info("No upload bucket specified") |
| raise Exception( |
| "No upload bucket specified. You can specify one in the config file." |
| ) |
| |
| table_name = form.name.data |
| schema_name = form.schema.data |
| |
| if config.get("UPLOADED_CSV_HIVE_NAMESPACE"): |
| if "." in table_name or schema_name: |
| raise Exception( |
| "You can't specify a namespace. " |
| "All tables will be uploaded to the `{}` namespace".format( |
| config.get("HIVE_NAMESPACE") |
| ) |
| ) |
| full_table_name = "{}.{}".format( |
| config.get("UPLOADED_CSV_HIVE_NAMESPACE"), table_name |
| ) |
| else: |
| if "." in table_name and schema_name: |
| raise Exception( |
| "You can't specify a namespace both in the name of the table " |
| "and in the schema field. Please remove one" |
| ) |
| |
| full_table_name = ( |
| "{}.{}".format(schema_name, table_name) if schema_name else table_name |
| ) |
| |
| filename = form.csv_file.data.filename |
| |
| upload_prefix = config["CSV_TO_HIVE_UPLOAD_DIRECTORY"] |
| upload_path = config["UPLOAD_FOLDER"] + secure_filename(filename) |
| |
| # Optional dependency |
| from tableschema import Table # pylint: disable=import-error |
| |
| hive_table_schema = Table(upload_path).infer() |
| column_name_and_type = [] |
| for column_info in hive_table_schema["fields"]: |
| column_name_and_type.append( |
| "`{}` {}".format( |
| column_info["name"], convert_to_hive_type(column_info["type"]) |
| ) |
| ) |
| schema_definition = ", ".join(column_name_and_type) |
| |
| # Optional dependency |
| import boto3 # pylint: disable=import-error |
| |
| s3 = boto3.client("s3") |
| location = os.path.join("s3a://", bucket_path, upload_prefix, table_name) |
| s3.upload_file( |
| upload_path, bucket_path, os.path.join(upload_prefix, table_name, filename) |
| ) |
| sql = f"""CREATE TABLE {full_table_name} ( {schema_definition} ) |
| ROW FORMAT DELIMITED FIELDS TERMINATED BY ',' STORED AS |
| TEXTFILE LOCATION '{location}' |
| tblproperties ('skip.header.line.count'='1')""" |
| logging.info(form.con.data) |
| engine = create_engine(form.con.data.sqlalchemy_uri_decrypted) |
| engine.execute(sql) |
| |
| @classmethod |
| def convert_dttm(cls, target_type: str, dttm: datetime) -> str: |
| tt = target_type.upper() |
| if tt == "DATE": |
| return "CAST('{}' AS DATE)".format(dttm.isoformat()[:10]) |
| elif tt == "TIMESTAMP": |
| return "CAST('{}' AS TIMESTAMP)".format(dttm.strftime("%Y-%m-%d %H:%M:%S")) |
| return "'{}'".format(dttm.strftime("%Y-%m-%d %H:%M:%S")) |
| |
| @classmethod |
| def adjust_database_uri(cls, uri, selected_schema=None): |
| if selected_schema: |
| uri.database = parse.quote(selected_schema, safe="") |
| return uri |
| |
| @classmethod |
| def _extract_error_message(cls, e): |
| msg = str(e) |
| match = re.search(r'errorMessage="(.*?)(?<!\\)"', msg) |
| if match: |
| msg = match.group(1) |
| return msg |
| |
| @classmethod |
| def progress(cls, log_lines): |
| total_jobs = 1 # assuming there's at least 1 job |
| current_job = 1 |
| stages = {} |
| for line in log_lines: |
| match = cls.jobs_stats_r.match(line) |
| if match: |
| total_jobs = int(match.groupdict()["max_jobs"]) or 1 |
| match = cls.launching_job_r.match(line) |
| if match: |
| current_job = int(match.groupdict()["job_number"]) |
| total_jobs = int(match.groupdict()["max_jobs"]) or 1 |
| stages = {} |
| match = cls.stage_progress_r.match(line) |
| if match: |
| stage_number = int(match.groupdict()["stage_number"]) |
| map_progress = int(match.groupdict()["map_progress"]) |
| reduce_progress = int(match.groupdict()["reduce_progress"]) |
| stages[stage_number] = (map_progress + reduce_progress) / 2 |
| logging.info( |
| "Progress detail: {}, " # pylint: disable=logging-format-interpolation |
| "current job {}, " |
| "total jobs: {}".format(stages, current_job, total_jobs) |
| ) |
| |
| stage_progress = sum(stages.values()) / len(stages.values()) if stages else 0 |
| |
| progress = 100 * (current_job - 1) / total_jobs + stage_progress / total_jobs |
| return int(progress) |
| |
| @classmethod |
| def get_tracking_url(cls, log_lines): |
| lkp = "Tracking URL = " |
| for line in log_lines: |
| if lkp in line: |
| return line.split(lkp)[1] |
| return None |
| |
| @classmethod |
| def handle_cursor(cls, cursor, query, session): # pylint: disable=too-many-locals |
| """Updates progress information""" |
| from pyhive import hive # pylint: disable=no-name-in-module |
| |
| unfinished_states = ( |
| hive.ttypes.TOperationState.INITIALIZED_STATE, |
| hive.ttypes.TOperationState.RUNNING_STATE, |
| ) |
| polled = cursor.poll() |
| last_log_line = 0 |
| tracking_url = None |
| job_id = None |
| query_id = query.id |
| while polled.operationState in unfinished_states: |
| query = session.query(type(query)).filter_by(id=query_id).one() |
| if query.status == QueryStatus.STOPPED: |
| cursor.cancel() |
| break |
| |
| log = cursor.fetch_logs() or "" |
| if log: |
| log_lines = log.splitlines() |
| progress = cls.progress(log_lines) |
| logging.info(f"Query {query_id}: Progress total: {progress}") |
| needs_commit = False |
| if progress > query.progress: |
| query.progress = progress |
| needs_commit = True |
| if not tracking_url: |
| tracking_url = cls.get_tracking_url(log_lines) |
| if tracking_url: |
| job_id = tracking_url.split("/")[-2] |
| logging.info( |
| f"Query {query_id}: Found the tracking url: {tracking_url}" |
| ) |
| tracking_url = tracking_url_trans(tracking_url) |
| logging.info( |
| f"Query {query_id}: Transformation applied: {tracking_url}" |
| ) |
| query.tracking_url = tracking_url |
| logging.info(f"Query {query_id}: Job id: {job_id}") |
| needs_commit = True |
| if job_id and len(log_lines) > last_log_line: |
| # Wait for job id before logging things out |
| # this allows for prefixing all log lines and becoming |
| # searchable in something like Kibana |
| for l in log_lines[last_log_line:]: |
| logging.info(f"Query {query_id}: [{job_id}] {l}") |
| last_log_line = len(log_lines) |
| if needs_commit: |
| session.commit() |
| time.sleep(hive_poll_interval) |
| polled = cursor.poll() |
| |
| @classmethod |
| def get_columns( |
| cls, inspector: Inspector, table_name: str, schema: Optional[str] |
| ) -> List[Dict[str, Any]]: |
| return inspector.get_columns(table_name, schema) |
| |
| @classmethod |
| def where_latest_partition( # pylint: disable=too-many-arguments |
| cls, |
| table_name: str, |
| schema: Optional[str], |
| database, |
| query: Select, |
| columns: Optional[List] = None, |
| ) -> Optional[Select]: |
| try: |
| col_names, values = cls.latest_partition( |
| table_name, schema, database, show_first=True |
| ) |
| except Exception: # pylint: disable=broad-except |
| # table is not partitioned |
| return None |
| if values is not None and columns is not None: |
| for col_name, value in zip(col_names, values): |
| for clm in columns: |
| if clm.get("name") == col_name: |
| query = query.where(Column(col_name) == value) |
| |
| return query |
| return None |
| |
| @classmethod |
| def _get_fields(cls, cols: List[dict]) -> List[ColumnClause]: |
| return BaseEngineSpec._get_fields(cols) # pylint: disable=protected-access |
| |
| @classmethod |
| def latest_sub_partition(cls, table_name, schema, database, **kwargs): |
| # TODO(bogdan): implement` |
| pass |
| |
| @classmethod |
| def _latest_partition_from_df(cls, df) -> Optional[List[str]]: |
| """Hive partitions look like ds={partition name}""" |
| if not df.empty: |
| return [df.ix[:, 0].max().split("=")[1]] |
| return None |
| |
| @classmethod |
| def _partition_query( # pylint: disable=too-many-arguments |
| cls, table_name, database, limit=0, order_by=None, filters=None |
| ): |
| return f"SHOW PARTITIONS {table_name}" |
| |
| @classmethod |
| def select_star( # pylint: disable=too-many-arguments |
| cls, |
| database, |
| table_name: str, |
| engine: Engine, |
| schema: str = None, |
| limit: int = 100, |
| show_cols: bool = False, |
| indent: bool = True, |
| latest_partition: bool = True, |
| cols: Optional[List[Dict[str, Any]]] = None, |
| ) -> str: |
| return super( # pylint: disable=bad-super-call |
| PrestoEngineSpec, cls |
| ).select_star( |
| database, |
| table_name, |
| engine, |
| schema, |
| limit, |
| show_cols, |
| indent, |
| latest_partition, |
| cols, |
| ) |
| |
| @classmethod |
| def modify_url_for_impersonation(cls, url, impersonate_user: bool, username: str): |
| """ |
| Modify the SQL Alchemy URL object with the user to impersonate if applicable. |
| :param url: SQLAlchemy URL object |
| :param impersonate_user: Flag indicating if impersonation is enabled |
| :param username: Effective username |
| """ |
| # Do nothing in the URL object since instead this should modify |
| # the configuraiton dictionary. See get_configuration_for_impersonation |
| pass |
| |
| @classmethod |
| def get_configuration_for_impersonation( |
| cls, uri: str, impersonate_user: bool, username: str |
| ) -> Dict[str, str]: |
| """ |
| Return a configuration dictionary that can be merged with other configs |
| that can set the correct properties for impersonating users |
| :param uri: URI string |
| :param impersonate_user: Flag indicating if impersonation is enabled |
| :param username: Effective username |
| :return: Configs required for impersonation |
| """ |
| configuration = {} |
| url = make_url(uri) |
| backend_name = url.get_backend_name() |
| |
| # Must be Hive connection, enable impersonation, and set param |
| # auth=LDAP|KERBEROS |
| if ( |
| backend_name == "hive" |
| and "auth" in url.query.keys() |
| and impersonate_user is True |
| and username is not None |
| ): |
| configuration["hive.server2.proxy.user"] = username |
| return configuration |
| |
| @staticmethod |
| def execute( # type: ignore |
| cursor, query: str, async_: bool = False |
| ): # pylint: disable=arguments-differ |
| kwargs = {"async": async_} |
| cursor.execute(query, **kwargs) |