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| <h1 class="title">Integration with Cloud Infrastructures</h1> |
| |
| |
| <ul id="markdown-toc"> |
| <li><a href="#introduction" id="markdown-toc-introduction">Introduction</a> <ul> |
| <li><a href="#important-cloud-object-stores-are-not-real-filesystems" id="markdown-toc-important-cloud-object-stores-are-not-real-filesystems">Important: Cloud Object Stores are Not Real Filesystems</a></li> |
| <li><a href="#consistency" id="markdown-toc-consistency">Consistency</a></li> |
| <li><a href="#installation" id="markdown-toc-installation">Installation</a></li> |
| <li><a href="#authenticating" id="markdown-toc-authenticating">Authenticating</a></li> |
| </ul> |
| </li> |
| <li><a href="#configuring" id="markdown-toc-configuring">Configuring</a> <ul> |
| <li><a href="#recommended-settings-for-writing-to-object-stores" id="markdown-toc-recommended-settings-for-writing-to-object-stores">Recommended settings for writing to object stores</a></li> |
| <li><a href="#parquet-io-settings" id="markdown-toc-parquet-io-settings">Parquet I/O Settings</a></li> |
| <li><a href="#orc-io-settings" id="markdown-toc-orc-io-settings">ORC I/O Settings</a></li> |
| </ul> |
| </li> |
| <li><a href="#spark-streaming-and-object-storage" id="markdown-toc-spark-streaming-and-object-storage">Spark Streaming and Object Storage</a></li> |
| <li><a href="#committing-work-into-cloud-storage-safely-and-fast" id="markdown-toc-committing-work-into-cloud-storage-safely-and-fast">Committing work into cloud storage safely and fast.</a></li> |
| <li><a href="#further-reading" id="markdown-toc-further-reading">Further Reading</a></li> |
| </ul> |
| |
| <h2 id="introduction">Introduction</h2> |
| |
| <p>All major cloud providers offer persistent data storage in <em>object stores</em>. |
| These are not classic “POSIX” file systems. |
| In order to store hundreds of petabytes of data without any single points of failure, |
| object stores replace the classic file system directory tree |
| with a simpler model of <code class="language-plaintext highlighter-rouge">object-name => data</code>. To enable remote access, operations |
| on objects are usually offered as (slow) HTTP REST operations.</p> |
| |
| <p>Spark can read and write data in object stores through filesystem connectors implemented |
| in Hadoop or provided by the infrastructure suppliers themselves. |
| These connectors make the object stores look <em>almost</em> like file systems, with directories and files |
| and the classic operations on them such as list, delete and rename.</p> |
| |
| <h3 id="important-cloud-object-stores-are-not-real-filesystems">Important: Cloud Object Stores are Not Real Filesystems</h3> |
| |
| <p>While the stores appear to be filesystems, underneath |
| they are still object stores, <a href="https://hadoop.apache.org/docs/current/hadoop-project-dist/hadoop-common/filesystem/introduction.html">and the difference is significant</a></p> |
| |
| <p>They cannot be used as a direct replacement for a cluster filesystem such as HDFS |
| <em>except where this is explicitly stated</em>.</p> |
| |
| <p>Key differences are:</p> |
| |
| <ul> |
| <li>The means by which directories are emulated may make working with them slow.</li> |
| <li>Rename operations may be very slow and, on failure, leave the store in an unknown state.</li> |
| <li>Seeking within a file may require new HTTP calls, hurting performance.</li> |
| </ul> |
| |
| <p>How does this affect Spark?</p> |
| |
| <ol> |
| <li>Reading and writing data can be significantly slower than working with a normal filesystem.</li> |
| <li>Some directory structures may be very inefficient to scan during query split calculation.</li> |
| <li>The rename-based algorithm by which Spark normally commits work when saving an RDD, DataFrame or Dataset |
| is potentially both slow and unreliable.</li> |
| </ol> |
| |
| <p>For these reasons, it is not always safe to use an object store as a direct destination of queries, or as |
| an intermediate store in a chain of queries. Consult the documentation of the object store and its |
| connector to determine which uses are considered safe.</p> |
| |
| <h3 id="consistency">Consistency</h3> |
| |
| <p>As of 2021, the object stores of Amazon (S3), Google Cloud (GCS) and Microsoft (Azure Storage, ADLS Gen1, ADLS Gen2) are all <em>consistent</em>.</p> |
| |
| <p>This means that as soon as a file is written/updated it can be listed, viewed and opened by other processes |
| -and the latest version will be retrieved. This was a known issue with AWS S3, especially with 404 caching |
| of HEAD requests made before an object was created.</p> |
| |
| <p>Even so: none of the store connectors provide any guarantees as to how their clients cope with objects |
| which are overwritten while a stream is reading them. Do not assume that the old file can be safely |
| read, nor that there is any bounded time period for changes to become visible -or indeed, that |
| the clients will not simply fail if a file being read is overwritten.</p> |
| |
| <p>For this reason: avoid overwriting files where it is known/likely that other clients |
| will be actively reading them.</p> |
| |
| <p>Other object stores are <em>inconsistent</em></p> |
| |
| <p>This includes <a href="https://docs.openstack.org/swift/latest/">OpenStack Swift</a>.</p> |
| |
| <p>Such stores are not always safe to use as a destination of work -consult |
| each store’s specific documentation.</p> |
| |
| <h3 id="installation">Installation</h3> |
| |
| <p>With the relevant libraries on the classpath and Spark configured with valid credentials, |
| objects can be read or written by using their URLs as the path to data. |
| For example <code class="language-plaintext highlighter-rouge">sparkContext.textFile("s3a://landsat-pds/scene_list.gz")</code> will create |
| an RDD of the file <code class="language-plaintext highlighter-rouge">scene_list.gz</code> stored in S3, using the s3a connector.</p> |
| |
| <p>To add the relevant libraries to an application’s classpath, include the <code class="language-plaintext highlighter-rouge">hadoop-cloud</code> |
| module and its dependencies.</p> |
| |
| <p>In Maven, add the following to the <code class="language-plaintext highlighter-rouge">pom.xml</code> file, assuming <code class="language-plaintext highlighter-rouge">spark.version</code> |
| is set to the chosen version of Spark:</p> |
| |
| <figure class="highlight"><pre><code class="language-xml" data-lang="xml"><span class="nt"><dependencyManagement></span> |
| ... |
| <span class="nt"><dependency></span> |
| <span class="nt"><groupId></span>org.apache.spark<span class="nt"></groupId></span> |
| <span class="nt"><artifactId></span>hadoop-cloud_2.12<span class="nt"></artifactId></span> |
| <span class="nt"><version></span>${spark.version}<span class="nt"></version></span> |
| <span class="nt"><scope></span>provided<span class="nt"></scope></span> |
| <span class="nt"></dependency></span> |
| ... |
| <span class="nt"></dependencyManagement></span></code></pre></figure> |
| |
| <p>Commercial products based on Apache Spark generally directly set up the classpath |
| for talking to cloud infrastructures, in which case this module may not be needed.</p> |
| |
| <h3 id="authenticating">Authenticating</h3> |
| |
| <p>Spark jobs must authenticate with the object stores to access data within them.</p> |
| |
| <ol> |
| <li>When Spark is running in a cloud infrastructure, the credentials are usually automatically set up.</li> |
| <li><code class="language-plaintext highlighter-rouge">spark-submit</code> reads the <code class="language-plaintext highlighter-rouge">AWS_ACCESS_KEY_ID</code>, <code class="language-plaintext highlighter-rouge">AWS_SECRET_ACCESS_KEY</code> |
| and <code class="language-plaintext highlighter-rouge">AWS_SESSION_TOKEN</code> environment variables and sets the associated authentication options |
| for the <code class="language-plaintext highlighter-rouge">s3n</code> and <code class="language-plaintext highlighter-rouge">s3a</code> connectors to Amazon S3.</li> |
| <li>In a Hadoop cluster, settings may be set in the <code class="language-plaintext highlighter-rouge">core-site.xml</code> file.</li> |
| <li>Authentication details may be manually added to the Spark configuration in <code class="language-plaintext highlighter-rouge">spark-defaults.conf</code></li> |
| <li>Alternatively, they can be programmatically set in the <code class="language-plaintext highlighter-rouge">SparkConf</code> instance used to configure |
| the application’s <code class="language-plaintext highlighter-rouge">SparkContext</code>.</li> |
| </ol> |
| |
| <p><em>Important: never check authentication secrets into source code repositories, |
| especially public ones</em></p> |
| |
| <p>Consult <a href="https://hadoop.apache.org/docs/current/">the Hadoop documentation</a> for the relevant |
| configuration and security options.</p> |
| |
| <h2 id="configuring">Configuring</h2> |
| |
| <p>Each cloud connector has its own set of configuration parameters, again, |
| consult the relevant documentation.</p> |
| |
| <h3 id="recommended-settings-for-writing-to-object-stores">Recommended settings for writing to object stores</h3> |
| |
| <p>For object stores whose consistency model means that rename-based commits are safe |
| use the <code class="language-plaintext highlighter-rouge">FileOutputCommitter</code> v2 algorithm for performance; v1 for safety.</p> |
| |
| <div class="language-plaintext highlighter-rouge"><div class="highlight"><pre class="highlight"><code>spark.hadoop.mapreduce.fileoutputcommitter.algorithm.version 2 |
| </code></pre></div></div> |
| |
| <p>This does less renaming at the end of a job than the “version 1” algorithm. |
| As it still uses <code class="language-plaintext highlighter-rouge">rename()</code> to commit files, it is unsafe to use |
| when the object store does not have consistent metadata/listings.</p> |
| |
| <p>The committer can also be set to ignore failures when cleaning up temporary |
| files; this reduces the risk that a transient network problem is escalated into a |
| job failure:</p> |
| |
| <div class="language-plaintext highlighter-rouge"><div class="highlight"><pre class="highlight"><code>spark.hadoop.mapreduce.fileoutputcommitter.cleanup-failures.ignored true |
| </code></pre></div></div> |
| |
| <p>The original v1 commit algorithm renames the output of successful tasks |
| to a job attempt directory, and then renames all the files in that directory |
| into the final destination during the job commit phase:</p> |
| |
| <div class="language-plaintext highlighter-rouge"><div class="highlight"><pre class="highlight"><code>spark.hadoop.mapreduce.fileoutputcommitter.algorithm.version 1 |
| </code></pre></div></div> |
| |
| <p>The slow performance of mimicked renames on Amazon S3 makes this algorithm |
| very, very slow. The recommended solution to this is switch to an S3 “Zero Rename” |
| committer (see below).</p> |
| |
| <p>For reference, here are the performance and safety characteristics of |
| different stores and connectors when renaming directories:</p> |
| |
| <table> |
| <thead> |
| <tr> |
| <th>Store</th> |
| <th>Connector</th> |
| <th>Directory Rename Safety</th> |
| <th>Rename Performance</th> |
| </tr> |
| </thead> |
| <tbody> |
| <tr> |
| <td>Amazon S3</td> |
| <td>s3a</td> |
| <td>Unsafe</td> |
| <td>O(data)</td> |
| </tr> |
| <tr> |
| <td>Azure Storage</td> |
| <td>wasb</td> |
| <td>Safe</td> |
| <td>O(files)</td> |
| </tr> |
| <tr> |
| <td>Azure Datalake Gen 2</td> |
| <td>abfs</td> |
| <td>Safe</td> |
| <td>O(1)</td> |
| </tr> |
| <tr> |
| <td>Google Cloud Storage</td> |
| <td>gs</td> |
| <td>Mixed</td> |
| <td>O(files)</td> |
| </tr> |
| </tbody> |
| </table> |
| |
| <ol> |
| <li>As storing temporary files can run up charges; delete |
| directories called <code class="language-plaintext highlighter-rouge">"_temporary"</code> on a regular basis.</li> |
| <li>For AWS S3, set a limit on how long multipart uploads can remain outstanding. |
| This avoids incurring bills from incompleted uploads.</li> |
| <li>For Google cloud, directory rename is file-by-file. Consider using the v2 committer |
| and only write code which generates idemportent output -including filenames, |
| as it is <em>no more unsafe</em> than the v1 committer, and faster.</li> |
| </ol> |
| |
| <h3 id="parquet-io-settings">Parquet I/O Settings</h3> |
| |
| <p>For optimal performance when working with Parquet data use the following settings:</p> |
| |
| <div class="language-plaintext highlighter-rouge"><div class="highlight"><pre class="highlight"><code>spark.hadoop.parquet.enable.summary-metadata false |
| spark.sql.parquet.mergeSchema false |
| spark.sql.parquet.filterPushdown true |
| spark.sql.hive.metastorePartitionPruning true |
| </code></pre></div></div> |
| |
| <p>These minimise the amount of data read during queries.</p> |
| |
| <h3 id="orc-io-settings">ORC I/O Settings</h3> |
| |
| <p>For best performance when working with ORC data, use these settings:</p> |
| |
| <div class="language-plaintext highlighter-rouge"><div class="highlight"><pre class="highlight"><code>spark.sql.orc.filterPushdown true |
| spark.sql.orc.splits.include.file.footer true |
| spark.sql.orc.cache.stripe.details.size 10000 |
| spark.sql.hive.metastorePartitionPruning true |
| </code></pre></div></div> |
| |
| <p>Again, these minimise the amount of data read during queries.</p> |
| |
| <h2 id="spark-streaming-and-object-storage">Spark Streaming and Object Storage</h2> |
| |
| <p>Spark Streaming can monitor files added to object stores, by |
| creating a <code class="language-plaintext highlighter-rouge">FileInputDStream</code> to monitor a path in the store through a call to |
| <code class="language-plaintext highlighter-rouge">StreamingContext.textFileStream()</code>.</p> |
| |
| <ol> |
| <li> |
| <p>The time to scan for new files is proportional to the number of files |
| under the path, not the number of <em>new</em> files, so it can become a slow operation. |
| The size of the window needs to be set to handle this.</p> |
| </li> |
| <li> |
| <p>Files only appear in an object store once they are completely written; there |
| is no need for a workflow of write-then-rename to ensure that files aren’t picked up |
| while they are still being written. Applications can write straight to the monitored directory.</p> |
| </li> |
| <li> |
| <p>Streams should only be checkpointed to a store implementing a fast and |
| atomic <code class="language-plaintext highlighter-rouge">rename()</code> operation. |
| Otherwise the checkpointing may be slow and potentially unreliable.</p> |
| </li> |
| </ol> |
| |
| <h2 id="committing-work-into-cloud-storage-safely-and-fast">Committing work into cloud storage safely and fast.</h2> |
| |
| <p>As covered earlier, commit-by-rename is dangerous on any object store which |
| exhibits eventual consistency (example: S3), and often slower than classic |
| filesystem renames.</p> |
| |
| <p>Some object store connectors provide custom committers to commit tasks and |
| jobs without using rename. In versions of Spark built with Hadoop 3.1 or later, |
| the S3A connector for AWS S3 is such a committer.</p> |
| |
| <p>Instead of writing data to a temporary directory on the store for renaming, |
| these committers write the files to the final destination, but do not issue |
| the final POST command to make a large “multi-part” upload visible. Those |
| operations are postponed until the job commit itself. As a result, task and |
| job commit are much faster, and task failures do not affect the result.</p> |
| |
| <p>To switch to the S3A committers, use a version of Spark was built with Hadoop |
| 3.1 or later, and switch the committers through the following options.</p> |
| |
| <div class="language-plaintext highlighter-rouge"><div class="highlight"><pre class="highlight"><code>spark.hadoop.fs.s3a.committer.name directory |
| spark.sql.sources.commitProtocolClass org.apache.spark.internal.io.cloud.PathOutputCommitProtocol |
| spark.sql.parquet.output.committer.class org.apache.spark.internal.io.cloud.BindingParquetOutputCommitter |
| </code></pre></div></div> |
| |
| <p>It has been tested with the most common formats supported by Spark.</p> |
| |
| <div class="language-python highlighter-rouge"><div class="highlight"><pre class="highlight"><code><span class="n">mydataframe</span><span class="p">.</span><span class="n">write</span><span class="p">.</span><span class="nb">format</span><span class="p">(</span><span class="s">"parquet"</span><span class="p">).</span><span class="n">save</span><span class="p">(</span><span class="s">"s3a://bucket/destination"</span><span class="p">)</span> |
| </code></pre></div></div> |
| |
| <p>More details on these committers can be found in the latest Hadoop documentation.</p> |
| |
| <p>Note: depending upon the committer used, in-progress statistics may be |
| under-reported with Hadoop versions before 3.3.1.</p> |
| |
| <h2 id="further-reading">Further Reading</h2> |
| |
| <p>Here is the documentation on the standard connectors both from Apache and the cloud providers.</p> |
| |
| <ul> |
| <li><a href="https://hadoop.apache.org/docs/current/hadoop-openstack/index.html">OpenStack Swift</a>.</li> |
| <li><a href="https://hadoop.apache.org/docs/current/hadoop-azure/index.html">Azure Blob Storage</a>.</li> |
| <li><a href="https://hadoop.apache.org/docs/current/hadoop-azure/abfs.html">Azure Blob Filesystem (ABFS) and Azure Datalake Gen 2</a>.</li> |
| <li><a href="https://hadoop.apache.org/docs/current/hadoop-azure-datalake/index.html">Azure Data Lake Gen 1</a>.</li> |
| <li><a href="https://aws.amazon.com/s3/consistency/">Amazon S3 Strong Consistency</a></li> |
| <li><a href="https://hadoop.apache.org/docs/current3/hadoop-aws/tools/hadoop-aws/index.html">Hadoop-AWS module (Hadoop 3.x)</a>.</li> |
| <li><a href="https://hadoop.apache.org/docs/current2/hadoop-aws/tools/hadoop-aws/index.html">Amazon S3 via S3A and S3N (Hadoop 2.x)</a>.</li> |
| <li><a href="https://docs.aws.amazon.com/emr/latest/ManagementGuide/emr-fs.html">Amazon EMR File System (EMRFS)</a>. From Amazon.</li> |
| <li><a href="https://docs.amazonaws.cn/en_us/emr/latest/ReleaseGuide/emr-spark-s3-optimized-committer.html">Using the EMRFS S3-optimized Committer</a></li> |
| <li><a href="https://cloud.google.com/dataproc/docs/concepts/connectors/cloud-storage">Google Cloud Storage Connector for Spark and Hadoop</a>. From Google.</li> |
| <li><a href="https://docs.microsoft.com/en-us/azure/storage/blobs/data-lake-storage-abfs-driver">The Azure Blob Filesystem driver (ABFS)</a></li> |
| <li>IBM Cloud Object Storage connector for Apache Spark: <a href="https://github.com/CODAIT/stocator">Stocator</a>, |
| <a href="https://www.ibm.com/cloud/object-storage">IBM Object Storage</a>. From IBM.</li> |
| <li><a href="https://github.com/aliyun/alibabacloud-jindofs">Using JindoFS SDK to access Alibaba Cloud OSS</a>.</li> |
| </ul> |
| |
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