SLING-7765 Application creation missing variable declarations

Allow variables being overridden for applications (e.g. when launching
an application)
diff --git a/src/main/java/org/apache/sling/feature/io/json/ApplicationJSONReader.java b/src/main/java/org/apache/sling/feature/io/json/ApplicationJSONReader.java
index 91b4048..05382ca 100644
--- a/src/main/java/org/apache/sling/feature/io/json/ApplicationJSONReader.java
+++ b/src/main/java/org/apache/sling/feature/io/json/ApplicationJSONReader.java
@@ -19,10 +19,12 @@
 import org.apache.felix.configurator.impl.json.JSONUtil;
 import org.apache.sling.feature.Application;
 import org.apache.sling.feature.ArtifactId;
+import org.apache.sling.feature.KeyValueMap;
 
 import java.io.IOException;
 import java.io.Reader;
 import java.io.StringReader;
+import java.util.Collections;
 import java.util.Map;
 
 import javax.json.Json;
@@ -41,11 +43,26 @@
      * @return The application
      * @throws IOException If an IO errors occurs or the JSON is invalid.
      */
-    public static Application read(final Reader reader)
+    public static Application read(final Reader reader) throws IOException {
+        return read(reader, Collections.emptyMap());
+    }
+
+    /**
+     * Read a new application from the reader
+     * The reader is not closed. It is up to the caller to close the reader.
+     *
+     * @param reader The reader for the feature
+     * @param overriddenVariables Map of variables that override the variable
+     * values as in the application JSON
+     * @return The application
+     * @throws IOException If an IO errors occurs or the JSON is invalid.
+     */
+    public static Application read(final Reader reader, Map<String, String> overriddenVariables)
     throws IOException {
         try {
             final ApplicationJSONReader mr = new ApplicationJSONReader();
-            mr.readApplication(reader);
+
+            mr.readApplication(reader, overriddenVariables);
             return mr.app;
         } catch (final IllegalStateException | IllegalArgumentException e) {
             throw new IOException(e);
@@ -55,6 +72,11 @@
     /** The read application. */
     private final Application app;
 
+    /** This holds the application variables including any overrides provided,
+     * e.g. via the launcher commandline.
+     */
+    private volatile KeyValueMap variables;
+
     /**
      * Private constructor
      */
@@ -66,9 +88,10 @@
     /**
      * Read a full application
      * @param reader The reader
+     * @param overriddenVariables
      * @throws IOException If an IO error occurs or the JSON is not valid.
      */
-    private void readApplication(final Reader reader)
+    private void readApplication(final Reader reader, Map<String, String> overriddenVariables)
     throws IOException {
         final JsonObject json = Json.createReader(new StringReader(minify(reader))).readObject();
 
@@ -80,6 +103,15 @@
             app.setFramework(ArtifactId.parse(frameworkId));
         }
         this.readVariables(map, app.getVariables());
+
+        this.variables = new KeyValueMap();
+        this.variables.putAll(app.getVariables());
+
+        // Apply the overrides
+        for (Map.Entry<String, String> entry : overriddenVariables.entrySet()) {
+            variables.put(entry.getKey(), entry.getValue());
+        }
+
         this.readBundles(map, app.getBundles(), app.getConfigurations());
         this.readFrameworkProperties(map, app.getFrameworkProperties());
         this.readConfigurations(map, app.getConfigurations());
@@ -91,12 +123,12 @@
 
     @Override
     protected Object handleResolveVars(Object val) {
-        return handleVars(val, app.getVariables());
+        return handleVars(val, variables);
     }
 
     @Override
     protected Object handleLaunchVars(Object val) {
-        return handleVars(val, app.getVariables());
+        return handleVars(val, variables);
     }
 }
 
diff --git a/src/test/java/org/apache/sling/feature/io/json/ApplicationJSONReaderTest.java b/src/test/java/org/apache/sling/feature/io/json/ApplicationJSONReaderTest.java
new file mode 100644
index 0000000..55c9145
--- /dev/null
+++ b/src/test/java/org/apache/sling/feature/io/json/ApplicationJSONReaderTest.java
@@ -0,0 +1,54 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one or more
+ * contributor license agreements.  See the NOTICE file distributed with
+ * this work for additional information regarding copyright ownership.
+ * The ASF licenses this file to You under the Apache License, Version 2.0
+ * (the "License"); you may not use this file except in compliance with
+ * the License.  You may obtain a copy of the License at
+ *
+ *      http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package org.apache.sling.feature.io.json;
+
+import org.apache.sling.feature.Application;
+import org.apache.sling.feature.Configuration;
+import org.junit.Test;
+
+import java.io.File;
+import java.io.FileReader;
+import java.util.HashMap;
+import java.util.Map;
+
+import static org.junit.Assert.assertEquals;
+
+public class ApplicationJSONReaderTest {
+    @Test
+    public void testOverrideVariables() throws Exception {
+        File appFile = new File(getClass().getResource("/applications/app_with_vars.json").toURI());
+        FileReader fr = new FileReader(appFile);
+
+        Map<String, String> overridden = new HashMap<>();
+        overridden.put("web.port", "12345");
+        overridden.put("something", "else");
+
+        Application app = ApplicationJSONReader.read(fr, overridden);
+        Configuration cfg = app.getConfigurations().getConfiguration("org.apache.felix.http");
+        assertEquals("12345", cfg.getProperties().get("org.osgi.service.http.port"));
+    }
+
+    @Test
+    public void testDefaultVariables() throws Exception {
+        File appFile = new File(getClass().getResource("/applications/app_with_vars.json").toURI());
+        FileReader fr = new FileReader(appFile);
+
+        Application app = ApplicationJSONReader.read(fr);
+        Configuration cfg = app.getConfigurations().getConfiguration("org.apache.felix.http");
+        assertEquals("8888", cfg.getProperties().get("org.osgi.service.http.port"));
+    }
+}
diff --git a/src/test/resources/applications/app_with_vars.json b/src/test/resources/applications/app_with_vars.json
new file mode 100644
index 0000000..86ff7c8
--- /dev/null
+++ b/src/test/resources/applications/app_with_vars.json
@@ -0,0 +1,24 @@
+{
+  "frameworkId":"org.apache.felix:org.apache.felix.framework:6.0.0",
+  "variables":{
+    "web.port":"8888"
+  },
+  "features":[
+    "org.apache.sling:mytestfeature:slingfeature:test:0.0.1-SNAPSHOT"
+  ],
+  "bundles":[
+    {
+      "id":"org.apache.felix:org.apache.felix.log:1.0.1",
+      "start-level":"1",
+      "start-order":"1"
+    }
+  ],
+  "configurations":{
+    "org.apache.felix.http":{
+      "org.osgi.service.http.port":"${web.port}"
+    }
+  },
+  "framework-properties":{
+    "org.osgi.framework.bootdelegation":"sun.*,com.sun.*"
+  }
+}
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