examples/onnx/bert/bert-squad.py

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import os
import zipfile
import numpy as np
import json

from singa import device
from singa import tensor
from singa import sonnx
from singa import autograd
import onnx
import tokenization
from run_onnx_squad import read_squad_examples, convert_examples_to_features, RawResult, write_predictions

import sys
sys.path.append(os.path.dirname(__file__) + '/..')
from utils import download_model, update_batch_size, check_exist_or_download

import logging
logging.basicConfig(level=logging.INFO, format='%(asctime)-15s %(message)s')

max_answer_length = 30
max_seq_length = 256
doc_stride = 128
max_query_length = 64
n_best_size = 20
batch_size = 1


def load_vocab():
    url = 'https://storage.googleapis.com/bert_models/2018_10_18/uncased_L-12_H-768_A-12.zip'
    download_dir = '/tmp/'
    filename = os.path.join(download_dir, 'uncased_L-12_H-768_A-12', '.',
                            'vocab.txt')
    with zipfile.ZipFile(check_exist_or_download(url), 'r') as z:
        z.extractall(path=download_dir)
    return filename


class Infer:

    def __init__(self, sg_ir):
        self.sg_ir = sg_ir

    def forward(self, x):
        return sg_ir.run(x)


def preprocess():
    vocab_file = load_vocab()
    tokenizer = tokenization.FullTokenizer(vocab_file=vocab_file,
                                           do_lower_case=True)
    predict_file = os.path.join(os.path.dirname(__file__), 'inputs.json')
    # print content
    with open(predict_file) as json_file:
        test_data = json.load(json_file)
        print("The input is:", json.dumps(test_data, indent=2))

    eval_examples = read_squad_examples(input_file=predict_file)

    # Use convert_examples_to_features method from run_onnx_squad to get parameters from the input
    input_ids, input_mask, segment_ids, extra_data = convert_examples_to_features(
        eval_examples, tokenizer, max_seq_length, doc_stride, max_query_length)
    return input_ids, input_mask, segment_ids, extra_data, eval_examples


def postprocess(eval_examples, extra_data, all_results):
    output_dir = 'predictions'
    os.makedirs(output_dir, exist_ok=True)
    output_prediction_file = os.path.join(output_dir, "predictions.json")
    output_nbest_file = os.path.join(output_dir, "nbest_predictions.json")
    write_predictions(eval_examples, extra_data, all_results, n_best_size,
                      max_answer_length, True, output_prediction_file,
                      output_nbest_file)

    # print results
    with open(output_prediction_file) as json_file:
        test_data = json.load(json_file)
        print("The result is:", json.dumps(test_data, indent=2))


if __name__ == "__main__":

    url = 'https://media.githubusercontent.com/media/onnx/models/master/text/machine_comprehension/bert-squad/model/bertsquad-10.tar.gz'
    download_dir = '/tmp/'
    model_path = os.path.join(download_dir, 'download_sample_10',
                              'bertsquad10.onnx')

    logging.info("onnx load model...")
    download_model(url)
    onnx_model = onnx.load(model_path)

    # set batch size
    onnx_model = update_batch_size(onnx_model, batch_size)
    dev = device.create_cuda_gpu()
    autograd.training = False

    # inference
    logging.info("preprocessing...")
    input_ids, input_mask, segment_ids, extra_data, eval_examples = preprocess()

    sg_ir = None
    n = len(input_ids)
    bs = batch_size
    all_results = []

    tmp_dict = {}
    for idx in range(0, n):
        logging.info("starting infer sample {}...".format(idx))
        item = eval_examples[idx]
        inputs = [
            np.array([item.qas_id], dtype=np.int32),
            segment_ids[idx:idx + bs].astype(np.int32),
            input_mask[idx:idx + bs].astype(np.int32),
            input_ids[idx:idx + bs].astype(np.int32),
        ]

        if sg_ir is None:
            # prepare the model
            logging.info("model is none, prepare model...")
            sg_ir = sonnx.prepare(onnx_model,
                                  device=dev,
                                  init_inputs=inputs,
                                  keep_initializers_as_inputs=False)
            model = Infer(sg_ir)

        x_batch = []
        for inp in inputs:
            tmp_tensor = tensor.from_numpy(inp)
            tmp_tensor.to_device(dev)
            x_batch.append(tmp_tensor)

        logging.info("model running for sample {}...".format(idx))
        outputs = model.forward(x_batch)

        logging.info("hanlde the result of sample {}...".format(idx))
        result = []
        for outp in outputs:
            result.append(tensor.to_numpy(outp))

        in_batch = result[1].shape[0]
        start_logits = [float(x) for x in result[1][0].flat]
        end_logits = [float(x) for x in result[0][0].flat]
        for i in range(0, in_batch):
            unique_id = len(all_results)
            all_results.append(
                RawResult(unique_id=unique_id,
                          start_logits=start_logits,
                          end_logits=end_logits))
    # postprocessing
    logging.info("postprocessing...")
    postprocess(eval_examples, extra_data, all_results)