| ========================== | |
| Taverna 2.2.0 known issues | |
| ========================== | |
| This document some of the known issues in Taverna 2.2.0. A full list | |
| and further details can be found within myGrid's issue tracker Jira at | |
| http://www.mygrid.org.uk/dev/issues/secure/IssueNavigator.jspa?mode=hide&requestId=10171 | |
| General issues | |
| ============== | |
| T2-890: Iteration strategy not always translated correctly from Taverna | |
| 1 workflows (most likely due to Taverna 1 having inconsistent iteration | |
| strategies) | |
| T2-895: The dataviewer should be included with the release. | |
| T2-1144: Plugin manager only supports HTTP-based sites | |
| Workflow engine | |
| =============== | |
| T2-1423: Merges of depth 1 in front of depth 0 can give empty list | |
| Data management | |
| =============== | |
| T2-1033: The database can become locked after an abrupt close of Taverna | |
| T2-1264: Database not starting up could cause NullPointerException in | |
| StringConstant | |
| Provenance capturing | |
| ==================== | |
| T2-982: If the database is already being used, for example by another | |
| instance of Taverna, then attempts to use it do not fail gracefully. | |
| T2-1062: Failed to start database 't2-database' error | |
| T2-1211: Provenance does not capture details of retries | |
| T2-1212: Provenance does not capture details about looping | |
| T2-1342: Provenance fails if nested workflow's processor name matches | |
| processor inside nested workflow | |
| Security | |
| ======== | |
| T2-697: Export of trusted certificates don't work | |
| T2-933: Secured WSDLs should be indicated with padlock in diagram | |
| Workbench issues | |
| ================ | |
| T2-294: Can't add alternative services to processor | |
| T2-495: Removing links to a merge leaves stand-alone merge | |
| T2-766: If/else style branching | |
| T2-1053: If you have a lot of workflows (say over 50) open then the | |
| workflows menu does not cope | |
| T2-1302: Registration dialog is too big | |
| T2-1328: Configure available when no selection | |
| T2-1329: File-Open dialogue in Windows has button for creating a folder | |
| T2-1402: Double-clicking Run icon runs workflow w/no inputs twice | |
| Available services | |
| ================== | |
| T2-239: Can't save custom beanshell script as local worker | |
| T2-621: Should include services from opened workflow | |
| T2-762: Can't remove 'Local services' | |
| T2-767: Can't save configured services (Beanshell, BioMart) | |
| T2-1151: Empty/failing service providers can't be removed (Only by | |
| 'Remove all user-added') | |
| T2-1235: Should cache descriptions, should work even starting offline | |
| T2-1236, T2-1237: Ability to refresh service descriptions (while | |
| developing a service) | |
| Workflow diagram | |
| ================ | |
| T2-216: Text-cursor showed when hovering over services | |
| T2-237: Control-click don't work on a mac | |
| T2-238: Difficult to click link for removal | |
| T2-505: Port display order not consistent | |
| T2-508: Show/hide ports menu item does not update correctly on OS X | |
| T2-839: Nested workflow with no inputs shown incorrectly in diagram | |
| T2-991, T2-1044: Diagram too tiny for small workflows | |
| T2-1001: Arrows to a merge can start from the wrong position when ports | |
| are displayed | |
| T2-1074: ConcurrentModificationException in GraphMonitor | |
| T2-1120: Diagram does not indicate implicit iteration | |
| T2-1385: Panning to make a connection does not always work correctly | |
| Workflow explorer | |
| ================= | |
| T2-483: Need collapse/expand all | |
| T2-736: Ability to do multiple-delete | |
| Details tab | |
| =========== | |
| T2-350: Port details should show connections | |
| T2-1290: Undo does not work for annotation | |
| Looping | |
| ======= | |
| T2-641: Looping fails if tested output port not connected in workflow | |
| T2-1119: Looping not indicated in diagram | |
| List handling | |
| ============= | |
| T2-73: Taverna should indicate when list handling needs updating | |
| T2-199: Move down/left/right buttons missing | |
| T2-659, T2-813: Difficult to drag ports into dot/cross products | |
| T2-660: Iteration strategy editor is non-intuitive | |
| (Various other issues indicate the dialogue should be redone) | |
| Results/runs | |
| ============ | |
| T2-969: Need ability to store a run as OPM (Open Provenance Model) | |
| T2-1016: Ability to open workflow from previous run | |
| T2-1140: Saving of large data not memory-efficient | |
| T2-1213: Need workflow run progress report | |
| T2-1215: Colours should be red/green indicating status (as in t1) | |
| T2-1218: Can't see errors for services with no output ports | |
| T2-1249: Should auto-select the first value in list | |
| T2-1251: Workflow outputs not always shown if workflow executes fast | |
| (redraw issue) | |
| T2-1323: Deleting a workflow run should move to next entry | |
| Output values (Renderers) | |
| ========================= | |
| T2-1030: The SeqVista renderer appears even for non-SeqVista XML results | |
| T2-1026: An OutOfMemoryError was thrown and needs to be double-checked. | |
| T2-1207: Renderer area is too small for many outputs | |
| T2-1245: For quite large values, (> 100 MB), selecting runs out of | |
| memory without showing "Value is large" dialogue | |
| T2-1420: HTML renderer can't show complex web pages | |
| Beanshell scripts | |
| ================= | |
| T2-425: Beanshell editor ignores Alt-keystrokes in OS X | |
| T2-512: Cut and paste should be documented | |
| T2-421: Beanshell scripts not executed in a protective sandbox | |
| T2-779: Beanshell configuration needs help/descriptions | |
| T2-1122: Beanshell configuration dialogue behind main window after | |
| switching application | |
| BioMart services | |
| ================ | |
| T2-479: Selecting a BioMart filter can take some time | |
| T2-1046: Empty configuration panel sometimes appears | |
| BioMoby services | |
| ================ | |
| T2-671: Unnecessary console warning "Central class is | |
| org.biomoby.client.CentralDigestCachedImpl" | |
| Nested workflows | |
| ================ | |
| T2-203: Can't undo (in parent workflow) changes to nested workflow | |
| T2-791: Not always obvious that user is editing a nested workflow | |
| T2-1043: Import workflow "select source" shown incorrectly | |
| T2-1126: "Save as" in a nested workflow detaches it from parent | |
| T2-1335: Configure action for nested workflow is incorrect/inconsistent | |
| T2-1340: Nested workflow never completes if input port not connected | |
| Local workers | |
| ============= | |
| T2-288: List Files by Extension includes too many files | |
| T2-765, T2-764, T2-763: Various improvements needed for "Execute SQL" | |
| T2-1099: Local list workers only support strings, should use references | |
| Soaplab services | |
| ================ | |
| T2-337: Should also support Soaplab 2 | |
| WSDL services | |
| ============= | |
| T2-486: Can't use lists of lists as input | |
| T2-587: Can't distinguish between several declared operations with same | |
| name | |
| T2-1061: Can't upload SOAP attachments (only receive) | |
| T2-1105: Wrong/invalid element name from XML splitters for inner complex | |
| types | |
| T2-1106: Can't import cyclic XML schema includes | |
| T2-1108: Does not support XML attributes (only elements) in XML | |
| splitters | |
| T2-1088, T2-1110: Incorrect handling of arrays in result | |
| T2-1115: WSDL 1.2 and 2 not supported | |
| T2-1160: XML splitters not updated when XML schema changes on server | |
| T2-1224: Binary data invalid as input, need 'Encode as base64' local | |
| worker first | |
| T2-1229: Security dialogue should remember/guess security profile | |
| T2-1230: Security dialogue don't indicate if username/password already | |
| set | |
| T2-1243: HTTP Digest-protected web services not supported | |
| T2-1339: Need better error message on Illegal Keysize when JCE policy | |
| not installed | |
| T2-1471: XML output splitters return wrong elements on maxOccurs=0 | |
| Disabled services | |
| ================= | |
| T2-1405: Edit Property does not ask for confirmation on Window Close | |
| myExperiment perspective | |
| ======================== | |
| T2-1036: The perspective should filter out broken workflows. This | |
| relies on myExperiment's capability being upgraded, | |
| T2-1068: Does not display processors/services of Taverna 2 workflows | |
| (only T1) | |
| T2-1121: Upload seems to require title/description even when it will be | |
| derived | |
| Documentation | |
| ============= | |
| T2-634: The possible solutions for Taverna 1 workflows that depend on | |
| fail-if-false should be documented. | |
| Stian Soiland-Reyes, Alan R Williams, 2010-07-05 | |