| { |
| "classLoaderSharing" : "workflow", |
| "script" : "import org.biojava.bio.seq.DNATools;\nimport org.biojava.bio.seq.RNATools;\nimport org.biojava.bio.symbol.SymbolList;\n\nif ((dna_seq == void) || (dna_seq == null)) {\n\tthrow new RuntimeException(\"The dna_seq must be specified\");\n}\n\n// make a DNA SymbolList\nSymbolList symL = DNATools.createDNA(dna_seq);\n\n// transcribe it to RNA (after BioJava 1.4 this method is\n// deprecated)\nsymL = RNATools.transcribe(symL);\n\n// (after BioJava 1.4 use this method instead)\n// symL = DNATools.toRNA(symL);\n\n// just to prove it worked\nrna_seq = symL.seqString();\n", |
| "localworkerName" : "net.sourceforge.taverna.scuflworkers.biojava.TranscribeWorker", |
| "inputPorts" : [ { |
| "name" : "dna_seq", |
| "depth" : 0, |
| "type" : "String" |
| } ], |
| "outputPorts" : [ { |
| "name" : "rna_seq", |
| "depth" : 0, |
| "granularDepth" : 0 |
| } ], |
| "isAltered" : false |
| } |
