| <?xml version="1.0" encoding="UTF-8"?> |
| <!-- |
| Licensed to the Apache Software Foundation (ASF) under one or more |
| contributor license agreements. See the NOTICE file distributed with |
| this work for additional information regarding copyright ownership. |
| The ASF licenses this file to You under the Apache License, Version 2.0 |
| (the "License"); you may not use this file except in compliance with |
| the License. You may obtain a copy of the License at |
| |
| http://www.apache.org/licenses/LICENSE-2.0 |
| |
| Unless required by applicable law or agreed to in writing, software |
| distributed under the License is distributed on an "AS IS" BASIS, |
| WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. |
| See the License for the specific language governing permissions and |
| limitations under the License. |
| --> |
| <project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd"> |
| <modelVersion>4.0.0</modelVersion> |
| <parent> |
| <groupId>org.apache.taverna</groupId> |
| <artifactId>taverna-parent</artifactId> |
| <version>1-incubating-SNAPSHOT</version> |
| </parent> |
| <groupId>org.apache.taverna.language</groupId> |
| <artifactId>taverna-language</artifactId> |
| <version>0.15.0-incubating-SNAPSHOT</version> |
| <packaging>pom</packaging> |
| |
| <name>Apache Taverna Language APIs (Scufl2, Databundle)</name> |
| <description>Taverna Language API for workflow definitions (SCUFL2) |
| and workflow inputs/outputs/run (DataBundle). |
| </description> |
| |
| <build> |
| <plugins> |
| <plugin> |
| <groupId>org.apache.rat</groupId> |
| <artifactId>apache-rat-plugin</artifactId> |
| <executions> |
| <execution> |
| <id>rat-checks</id> |
| <phase>verify</phase> |
| <goals> |
| <goal>check</goal> |
| </goals> |
| </execution> |
| </executions> |
| <configuration> |
| <useDefaultExcludes>true</useDefaultExcludes> |
| <excludes> |
| <!-- Following excludes needed for taverna-scufl2-rdf, |
| taverna-scufl2-integration-tests and taverna-scufl2-validation-integration |
| subfolders that should be modules but are not. --> |
| <exclude>**/.classpath</exclude> |
| <exclude>**/.project</exclude> |
| <exclude>**/.settings/</exclude> |
| <exclude>**/target/</exclude> |
| <!-- Text and Markdown files are typically used only for documentation |
| purposes and license declarations are usually spurious in these files since |
| often they will refer to the LICENSE/NOTICE for users to find the actual |
| licenses --> |
| <exclude>**/*.md</exclude> |
| <!-- META-INF services files can include comments but a license header |
| would be unecessarily clutter so we exclude these --> |
| <exclude>**/META-INF/services/*</exclude> |
| <!-- No headers in JSON which haven't got comments ... --> |
| <exclude>**/*.json</exclude> |
| <!-- Really a binary format, but must look like text --> |
| <exclude>**/mimetype</exclude> |
| <!-- Effectively a binary format --> |
| <exclude>**/*.url</exclude> |
| <!-- The following schemas are W3C; automatic retrieval during build is |
| blocked by their administrative processes, yet they are explicitly |
| standardised documents intended for wide use. Their licenses should |
| be standard W3C ones, but that's never stated explicitly by the W3C. |
| "Thanks!" --> |
| <exclude>**/xml.xsd</exclude> |
| <exclude>**/xenc-schema.xsd</exclude> |
| <exclude>**/xmldsig-core-schema.xsd</exclude> |
| <!-- This refers to the FOAF spec, which is available online at |
| http://xmlns.com/foaf/spec/ and which uses the CC-BY-SA 1.0 |
| license. The RDF downloadable from the site, of which this is a copy, |
| has no copyright statement at all in it. --> |
| <exclude>**/foaf.rdf</exclude> |
| <!-- The following contain a mix of licenses. PROBLEM! --> |
| <exclude>/src/main/resources/ontologies/*.owl</exclude> |
| <exclude>/src/main/resources/ontologies/*.rdf</exclude> |
| <exclude>/src/main/resources/org/purl/wf4ever/wfdesc/roterms.ttl</exclude> |
| <exclude>/src/main/resources/org/purl/wf4ever/wfdesc/wf4ever.ttl</exclude> |
| <exclude>/src/main/resources/org/purl/wf4ever/wfdesc/wfdesc.ttl</exclude> |
| <exclude>/src/main/resources/org/purl/wf4ever/wfdesc/wfprov.ttl</exclude> |
| <exclude>/src/main/resources/org/w3/prov-o.ttl</exclude> |
| <!-- Various files used for testing and test support only. --> |
| <!-- THESE SUPPORT COMMENTS with # --><!--taverna-integration-test--> |
| <exclude>/src/test/resources/t172starterpacklist</exclude> |
| <exclude>/src/test/resources/t230starterpacklist</exclude> |
| <!-- THESE ARE XML AND SUPPORT COMMENTS --> |
| <exclude>/src/test/resources/annotation_with_backslash.t2flow</exclude> |
| <exclude>/src/test/resources/beanshell-deps.t2flow</exclude> |
| <exclude>/src/test/resources/component_simple.t2flow</exclude> |
| <exclude>/src/test/resources/dataflow_link_then_merge.t2flow</exclude> |
| <exclude>/src/test/resources/dispatchlayers-xsd.t2flow</exclude> |
| <exclude>/src/test/resources/dispatchlayers.t2flow</exclude> |
| <exclude>/src/test/resources/fasta_and_pscan.t2flow</exclude> |
| <exclude>/src/test/resources/fasta_pscan_and_dbfetch.t2flow</exclude> |
| <exclude>/src/test/resources/interaction-with-strange-loop.t2flow</exclude> |
| <exclude>/src/test/resources/interaction_multiple_choice.t2flow</exclude> |
| <exclude>/src/test/resources/interaction_simple_tell.t2flow</exclude> |
| <exclude>/src/test/resources/iterationstrategies.t2flow</exclude><!-- TOM --> |
| <exclude>/src/test/resources/merge_fun.t2flow</exclude> |
| <exclude>/src/test/resources/merge_then_dataflow_link.t2flow</exclude> |
| <exclude>/src/test/resources/missing_merge.t2flow</exclude> |
| <exclude>/src/test/resources/missing_produced_by_941.t2flow</exclude> |
| <exclude>/src/test/resources/rest-2-2.t2flow</exclude> |
| <exclude>/src/test/resources/rshell-2-2.t2flow</exclude> |
| <exclude>/src/test/resources/simple_fasta.t2flow</exclude> |
| <exclude>/src/test/resources/sleepers.t2flow</exclude> |
| <exclude>/src/test/resources/apiconsumer.t2flow</exclude> |
| <exclude>/src/test/resources/rest.t2flow</exclude> |
| <exclude>/src/test/resources/valid_component_imagemagickconvert.t2flow</exclude> |
| <exclude>/src/test/resources/enm-v21.t2flow</exclude> |
| <exclude>/src/test/resources/helloworld.wfdesc.ttl</exclude> |
| <exclude>/src/test/resources/localdependency.t2flow</exclude> |
| <exclude>/src/test/resources/nested.t2flow</exclude> |
| <exclude>/src/test/resources/rdf-in-example-annotation.t2flow</exclude> |
| <exclude>/src/test/resources/workflow10.xml</exclude> |
| <exclude>/src/test/resources/full-example/ebi_interproscan_newservices_900329.t2flow</exclude> |
| <!-- Cannot contain comments; content must match program output. --> |
| <exclude>/src/test/resources/org/apache/taverna/scufl2/api/io/HelloWorld.txt</exclude> |
| <exclude>/src/test/resources/as.txt</exclude> |
| <!-- Expanded data bundle. Generated. --> |
| <exclude>/src/test/resources/full-example/ebi-wfrun-2013-05-31/</exclude> |
| </excludes> |
| </configuration> |
| </plugin> |
| |
| <!-- |
| <plugin> |
| <groupId>org.codehaus.mojo</groupId> |
| <artifactId>license-maven-plugin</artifactId> |
| <version>1.7</version> |
| <executions> |
| <execution> |
| <id>add-licenses</id> |
| <phase>generate-sources</phase> |
| <goals> |
| <goal>aggregate-add-third-party</goal> |
| </goals> |
| <configuration> |
| <excludedGroups>.*(mygrid|taverna).*</excludedGroups> |
| <useMissingFile>true</useMissingFile> |
| <missingFile>src/license/THIRD-PARTY.properties</missingFile> |
| <licenseMerges> |
| <licenseMerge>The Apache Software License, Version 2.0|Apache 2|Apache License|Apache License, Version 2.0|Apache Public License 2.0|Apache License Version 2.0|Apache Software License 2.0|Apache Software License - Version 2.0</licenseMerge> |
| <licenseMerge>The BSD License|BSD|BSD License|BSD-style license|BSD style|Aduna BSD license|Aduna BSD-style license</licenseMerge> |
| <licenseMerge>MIT License|The MIT License|MIT license</licenseMerge> |
| <licenseMerge>GNU Lesser General Public License|GNU LESSER GENERAL PUBLIC LICENSE|GNU Library or Lesser General Public License|LGPL</licenseMerge> |
| <licenseMerge>Common Development and Distribution License (CDDL) v1.0|CDDL 1.1|COMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0</licenseMerge> |
| <licenseMerge>Eclipse Public License, Version 1.0|Eclipse Public License</licenseMerge> |
| </licenseMerges> |
| </configuration> |
| </execution> |
| </executions> |
| </plugin> |
| --> |
| </plugins> |
| <pluginManagement> |
| <plugins> |
| <plugin> |
| <groupId>org.jvnet.jaxb2.maven2</groupId> |
| <artifactId>maven-jaxb2-plugin</artifactId> |
| <version>0.12.3</version> |
| <configuration> |
| <enableIntrospection>true</enableIntrospection> |
| <specVersion>2.2</specVersion> |
| <schemaDirectory>src/main/xsd</schemaDirectory> |
| </configuration> |
| </plugin> |
| </plugins> |
| </pluginManagement> |
| </build> |
| <!-- TODO: Update --> |
| <scm> |
| <!-- TODO: Replace with git.apache.org details : |
| <connection>scm:git:https://git-wip-us.apache.org/repos/asf/incubator-taverna-language.git</connection> |
| <developerConnection>scm:git:https://git-wip-us.apache.org/repos/asf/incubator-taverna-language.git</developerConnection> |
| <url>https://git-wip-us.apache.org/repos/asf/incubator-taverna-language.git</url> |
| --> |
| <connection>scm:git:https://github.com/taverna-incubator/incubator-taverna-language.git</connection> |
| <developerConnection>scm:git:git@github.com:taverna-incubator/incubator-taverna-language.git</developerConnection> |
| <url>https://github.com/taverna-incubator/incubator-taverna-language</url> |
| <tag>HEAD</tag> |
| </scm> |
| |
| <repositories> |
| <!-- |
| <repository> |
| <id>com.springsource.repository.bundles.release</id> |
| <name>SpringSource Enterprise Bundle Repository - SpringSource Bundle Releases</name> |
| <url>http://repository.springsource.com/maven/bundles/release</url> |
| <releases /> |
| <snapshots> |
| <enabled>false</enabled> |
| </snapshots> |
| </repository> |
| <repository> |
| <id>com.springsource.repository.bundles.external</id> |
| <name>SpringSource Enterprise Bundle Repository - External Bundle Releases</name> |
| <url>http://repository.springsource.com/maven/bundles/external</url> |
| <releases /> |
| <snapshots> |
| <enabled>false</enabled> |
| </snapshots> |
| </repository> |
| --> |
| |
| <!-- TODO: Remove myGrid repositories --> |
| <repository> |
| <id>taverna-incubating</id> |
| <name>Apache Taverna incubating Repository</name> |
| <url>http://repository.mygrid.org.uk/artifactory/incubator-snapshot-local/</url> |
| <releases> |
| <enabled>false</enabled> |
| </releases> |
| <snapshots /> |
| </repository> |
| <repository> |
| <!-- TODO: Use Apache snapshot repo instead --> |
| <id>taverna-incubating-release</id> |
| <name>Taverna incubating test release</name> |
| <url>http://repository.mygrid.org.uk/artifactory/incubator-release-test/</url> |
| <snapshots> |
| <enabled>false</enabled> |
| </snapshots> |
| </repository> |
| </repositories> |
| |
| <dependencyManagement> |
| <dependencies> |
| <dependency> |
| <groupId>com.fasterxml.jackson.core</groupId> |
| <artifactId>jackson-core</artifactId> |
| <version>${jackson.version}</version> |
| </dependency> |
| <dependency> |
| <groupId>com.fasterxml.jackson.core</groupId> |
| <artifactId>jackson-databind</artifactId> |
| <version>${jackson.version}</version> |
| </dependency> |
| <dependency> |
| <groupId>com.fasterxml.jackson.module</groupId> |
| <artifactId>jackson-module-jsonSchema</artifactId> |
| <version>${jackson.version}</version> |
| </dependency> |
| <dependency> |
| <groupId>junit</groupId> |
| <artifactId>junit</artifactId> |
| <version>${junit.version}</version> |
| <scope>test</scope> |
| </dependency> |
| <dependency> |
| <groupId>commons-io</groupId> |
| <artifactId>commons-io</artifactId> |
| <version>${commons.io.version}</version> |
| </dependency> |
| <dependency> |
| <groupId>org.jdom</groupId> |
| <artifactId>com.springsource.org.jdom</artifactId> |
| <version>${jdom.version}</version> |
| <type>jar</type> |
| </dependency> |
| <dependency> |
| <groupId>com.sun.xml.bind</groupId> |
| <artifactId>jaxb-impl</artifactId> |
| <version>${jaxb.version}</version> |
| <type>jar</type> |
| <optional>true</optional> |
| </dependency> |
| <dependency> |
| <groupId>org.jaxen</groupId> |
| <artifactId>com.springsource.org.jaxen</artifactId> |
| <!-- Was 1.1.4. as "1.1.3 has missing dependencies" but 1.1.1 appears to work fine --> |
| <version>${jaxen.version}</version> |
| <type>jar</type> |
| </dependency> |
| <dependency> |
| <groupId>commons-beanutils</groupId> |
| <artifactId>commons-beanutils</artifactId> |
| <version>${commons.beanutils.version}</version> |
| </dependency> |
| </dependencies> |
| </dependencyManagement> |
| <modules> |
| <module>taverna-baclava-language</module> |
| <module>taverna-databundle</module> |
| <module>taverna-robundle</module> |
| <module>taverna-scufl2-annotation</module> |
| <module>taverna-scufl2-api</module> |
| <module>taverna-scufl2-examples</module> |
| <module>taverna-scufl2-integration-tests</module> |
| <module>taverna-scufl2-schemas</module> |
| <module>taverna-scufl2-scufl</module> |
| <module>taverna-scufl2-t2flow</module> |
| <module>taverna-scufl2-ucfpackage</module> |
| <module>taverna-scufl2-wfbundle</module> |
| <module>taverna-scufl2-wfdesc</module> |
| </modules> |
| </project> |