<?xml version="1.0"?> | |
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<workflow xmlns="http://taverna.sf.net/2008/xml/t2flow" version="1" producedBy="taverna-2.1-beta-2"><dataflow id="e87de19a-02c7-4106-ae81-0b8e28efb22c" role="top"><name>Workflow9</name><inputPorts><port><name>InputText</name><depth>0</depth><granularDepth>0</granularDepth><annotations><annotation_chain encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns=""> | |
<annotationAssertions> | |
<net.sf.taverna.t2.annotation.AnnotationAssertionImpl> | |
<annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.FreeTextDescription"> | |
<text>Text text from which you want to extract terms</text> | |
</annotationBean> | |
<date>2009-07-23 16:52:37.781 BST</date> | |
<creators /> | |
<curationEventList /> | |
</net.sf.taverna.t2.annotation.AnnotationAssertionImpl> | |
</annotationAssertions> | |
</net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain><annotation_chain encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns=""> | |
<annotationAssertions> | |
<net.sf.taverna.t2.annotation.AnnotationAssertionImpl> | |
<annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.ExampleValue"> | |
<text>Technical terms are important for knowledge mining, especially in the bio-medical area where vast amount of documents are available. Technical terms are important for knowledge mining, especially in the bio-medical area where vast amount of documents are available. Technical terms are important for knowledge mining, especially in the bio-medical area where vast amount of documents are available. Technical terms are important for knowledge mining, especially in the bio-medical area where vast amount of documents are available.</text> | |
</annotationBean> | |
<date>2009-07-23 15:11:57.453 BST</date> | |
<creators /> | |
<curationEventList /> | |
</net.sf.taverna.t2.annotation.AnnotationAssertionImpl> | |
</annotationAssertions> | |
</net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain><annotation_chain encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns=""> | |
<annotationAssertions> | |
<net.sf.taverna.t2.annotation.AnnotationAssertionImpl> | |
<annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.FreeTextDescription"> | |
<text>Text text from which you want to extract terms. This should be in utf-8 format but can be in natural language form. This workflow assumes the language is English.</text> | |
</annotationBean> | |
<date>2009-07-23 16:53:50.984 BST</date> | |
<creators /> | |
<curationEventList /> | |
</net.sf.taverna.t2.annotation.AnnotationAssertionImpl> | |
</annotationAssertions> | |
</net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain></annotations></port></inputPorts><outputPorts><port><name>Terms</name></port></outputPorts><processors><processor><name>SentenceSplitter</name><inputPorts><port><name>parameters</name><depth>0</depth></port></inputPorts><outputPorts><port><name>parameters</name><depth>0</depth><granularDepth>0</granularDepth></port></outputPorts><annotations /><activities><activity><raven><group>net.sf.taverna.t2.activities</group><artifact>wsdl-activity</artifact><version>0.8</version></raven><class>net.sf.taverna.t2.activities.wsdl.WSDLActivity</class><inputMap><map from="parameters" to="parameters" /></inputMap><outputMap><map from="parameters" to="parameters" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.wsdl.WSDLActivityConfigurationBean xmlns=""> | |
<wsdl>http://nactem.mib.man.ac.uk:8082/SentenceBreaker/SentBreakerService?wsdl</wsdl> | |
<operation>annotateSentences</operation> | |
</net.sf.taverna.t2.activities.wsdl.WSDLActivityConfigurationBean></configBean><annotations /></activity></activities><dispatchStack><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>0.8</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig xmlns=""> | |
<maxJobs>1</maxJobs> | |
</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>0.8</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBounce</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>0.8</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failover</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>0.8</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig xmlns=""> | |
<backoffFactor>1.0</backoffFactor> | |
<initialDelay>1000</initialDelay> | |
<maxDelay>5000</maxDelay> | |
<maxRetries>0</maxRetries> | |
</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>0.8</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer></dispatchStack><iterationStrategyStack><iteration><strategy><cross><port name="parameters" depth="0" /></cross></strategy></iteration></iterationStrategyStack></processor><processor><name>SentenceSplitter_input</name><inputPorts><port><name>text</name><depth>0</depth></port><port><name>formatFlag</name><depth>0</depth></port></inputPorts><outputPorts><port><name>output</name><depth>0</depth><granularDepth>0</granularDepth></port></outputPorts><annotations /><activities><activity><raven><group>net.sf.taverna.t2.activities</group><artifact>wsdl-activity</artifact><version>0.8</version></raven><class>net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity</class><inputMap><map from="formatFlag" to="formatFlag" /><map from="text" to="text" /></inputMap><outputMap><map from="output" to="output" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLSplitterConfigurationBean xmlns=""> | |
<wrappedTypeXML><s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="annotateSentences" name="parameters" qname="{http://soapservices/}annotateSentences"><s:elements><s:basetype optional="false" unbounded="false" typename="int" name="formatFlag" qname="annotateSentences&gt;formatFlag" /><s:basetype optional="true" unbounded="false" typename="string" name="text" qname="annotateSentences&gt;text" /></s:elements></s:complextype></s:extensions></wrappedTypeXML> | |
<inputs> | |
<net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> | |
<allowsLiteralValues>false</allowsLiteralValues> | |
<name>formatFlag</name> | |
<depth>0</depth> | |
<mimeTypes class="java.util.Collections$SingletonList"> | |
<element class="string">'text/plain'</element> | |
</mimeTypes> | |
</net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> | |
<net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> | |
<allowsLiteralValues>false</allowsLiteralValues> | |
<name>text</name> | |
<depth>0</depth> | |
<mimeTypes class="java.util.Collections$SingletonList"> | |
<element class="string">'text/plain'</element> | |
</mimeTypes> | |
</net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> | |
</inputs> | |
<outputs> | |
<net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> | |
<granularDepth>0</granularDepth> | |
<name>output</name> | |
<depth>0</depth> | |
<mimeTypes class="java.util.Collections$SingletonList"> | |
<element class="string">'text/xml'</element> | |
</mimeTypes> | |
</net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> | |
</outputs> | |
</net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLSplitterConfigurationBean></configBean><annotations /></activity></activities><dispatchStack><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>0.8</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig xmlns=""> | |
<maxJobs>1</maxJobs> | |
</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>0.8</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBounce</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>0.8</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failover</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>0.8</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig xmlns=""> | |
<backoffFactor>1.0</backoffFactor> | |
<initialDelay>1000</initialDelay> | |
<maxDelay>5000</maxDelay> | |
<maxRetries>0</maxRetries> | |
</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>0.8</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer></dispatchStack><iterationStrategyStack><iteration><strategy><cross><port name="text" depth="0" /><port name="formatFlag" depth="0" /></cross></strategy></iteration></iterationStrategyStack></processor><processor><name>formatFlag_value</name><inputPorts /><outputPorts><port><name>value</name><depth>0</depth><granularDepth>0</granularDepth></port></outputPorts><annotations /><activities><activity><raven><group>net.sf.taverna.t2.activities</group><artifact>stringconstant-activity</artifact><version>0.8</version></raven><class>net.sf.taverna.t2.activities.stringconstant.StringConstantActivity</class><inputMap /><outputMap><map from="value" to="value" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.stringconstant.StringConstantConfigurationBean xmlns=""> | |
<value>4</value> | |
</net.sf.taverna.t2.activities.stringconstant.StringConstantConfigurationBean></configBean><annotations /></activity></activities><dispatchStack><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>0.8</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig xmlns=""> | |
<maxJobs>1</maxJobs> | |
</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>0.8</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBounce</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>0.8</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failover</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>0.8</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig xmlns=""> | |
<backoffFactor>1.0</backoffFactor> | |
<initialDelay>1000</initialDelay> | |
<maxDelay>5000</maxDelay> | |
<maxRetries>0</maxRetries> | |
</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>0.8</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer></dispatchStack><iterationStrategyStack><iteration><strategy /></iteration></iterationStrategyStack></processor><processor><name>SentenceSplitter_output</name><inputPorts><port><name>input</name><depth>0</depth></port></inputPorts><outputPorts><port><name>return</name><depth>0</depth><granularDepth>0</granularDepth></port></outputPorts><annotations /><activities><activity><raven><group>net.sf.taverna.t2.activities</group><artifact>wsdl-activity</artifact><version>0.8</version></raven><class>net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity</class><inputMap><map from="input" to="input" /></inputMap><outputMap><map from="return" to="return" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLSplitterConfigurationBean xmlns=""> | |
<wrappedTypeXML><s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="annotateSentencesResponse" name="parameters" qname="{http://soapservices/}annotateSentencesResponse"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="return" qname="annotateSentencesResponse&gt;return" /></s:elements></s:complextype></s:extensions></wrappedTypeXML> | |
<inputs> | |
<net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> | |
<handledReferenceSchemes /> | |
<translatedElementType>java.lang.String</translatedElementType> | |
<allowsLiteralValues>false</allowsLiteralValues> | |
<name>input</name> | |
<depth>0</depth> | |
<mimeTypes class="java.util.Collections$SingletonList"> | |
<element class="string">'text/xml'</element> | |
</mimeTypes> | |
</net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> | |
</inputs> | |
<outputs> | |
<net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> | |
<granularDepth>0</granularDepth> | |
<name>return</name> | |
<depth>0</depth> | |
<mimeTypes class="java.util.Collections$SingletonList"> | |
<element class="string">'text/plain'</element> | |
</mimeTypes> | |
</net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> | |
</outputs> | |
</net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLSplitterConfigurationBean></configBean><annotations /></activity></activities><dispatchStack><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>0.8</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig xmlns=""> | |
<maxJobs>1</maxJobs> | |
</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>0.8</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBounce</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>0.8</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failover</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>0.8</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig xmlns=""> | |
<backoffFactor>1.0</backoffFactor> | |
<initialDelay>1000</initialDelay> | |
<maxDelay>5000</maxDelay> | |
<maxRetries>0</maxRetries> | |
</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>0.8</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer></dispatchStack><iterationStrategyStack><iteration><strategy><cross><port name="input" depth="0" /></cross></strategy></iteration></iterationStrategyStack></processor><processor><name>TerMine</name><inputPorts><port><name>src</name><depth>0</depth></port><port><name>input_format</name><depth>0</depth></port><port><name>output_format</name><depth>0</depth></port><port><name>stoplist</name><depth>0</depth></port><port><name>filter</name><depth>0</depth></port></inputPorts><outputPorts><port><name>result</name><depth>0</depth><granularDepth>0</granularDepth></port></outputPorts><annotations /><activities><activity><raven><group>net.sf.taverna.t2.activities</group><artifact>wsdl-activity</artifact><version>0.8</version></raven><class>net.sf.taverna.t2.activities.wsdl.WSDLActivity</class><inputMap><map from="input_format" to="input_format" /><map from="output_format" to="output_format" /><map from="src" to="src" /><map from="stoplist" to="stoplist" /><map from="filter" to="filter" /></inputMap><outputMap><map from="result" to="result" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.wsdl.WSDLActivityConfigurationBean xmlns=""> | |
<wsdl>http://www.nactem.ac.uk/software/termine/webservice/termine.wsdl</wsdl> | |
<operation>analyze</operation> | |
</net.sf.taverna.t2.activities.wsdl.WSDLActivityConfigurationBean></configBean><annotations /></activity></activities><dispatchStack><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>0.8</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig xmlns=""> | |
<maxJobs>1</maxJobs> | |
</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>0.8</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBounce</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>0.8</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failover</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>0.8</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig xmlns=""> | |
<backoffFactor>1.0</backoffFactor> | |
<initialDelay>1000</initialDelay> | |
<maxDelay>5000</maxDelay> | |
<maxRetries>0</maxRetries> | |
</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>0.8</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer></dispatchStack><iterationStrategyStack><iteration><strategy><cross><port name="src" depth="0" /><port name="input_format" depth="0" /><port name="output_format" depth="0" /><port name="stoplist" depth="0" /><port name="filter" depth="0" /></cross></strategy></iteration></iterationStrategyStack></processor><processor><name>input_format_value</name><inputPorts /><outputPorts><port><name>value</name><depth>0</depth><granularDepth>0</granularDepth></port></outputPorts><annotations /><activities><activity><raven><group>net.sf.taverna.t2.activities</group><artifact>stringconstant-activity</artifact><version>0.8</version></raven><class>net.sf.taverna.t2.activities.stringconstant.StringConstantActivity</class><inputMap /><outputMap><map from="value" to="value" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.stringconstant.StringConstantConfigurationBean xmlns=""> | |
<value>plain.genia</value> | |
</net.sf.taverna.t2.activities.stringconstant.StringConstantConfigurationBean></configBean><annotations /></activity></activities><dispatchStack><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>0.8</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig xmlns=""> | |
<maxJobs>1</maxJobs> | |
</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>0.8</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBounce</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>0.8</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failover</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>0.8</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig xmlns=""> | |
<backoffFactor>1.0</backoffFactor> | |
<initialDelay>1000</initialDelay> | |
<maxDelay>5000</maxDelay> | |
<maxRetries>0</maxRetries> | |
</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>0.8</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer></dispatchStack><iterationStrategyStack><iteration><strategy /></iteration></iterationStrategyStack></processor><processor><name>output_format_value</name><inputPorts /><outputPorts><port><name>value</name><depth>0</depth><granularDepth>0</granularDepth></port></outputPorts><annotations /><activities><activity><raven><group>net.sf.taverna.t2.activities</group><artifact>stringconstant-activity</artifact><version>0.8</version></raven><class>net.sf.taverna.t2.activities.stringconstant.StringConstantActivity</class><inputMap /><outputMap><map from="value" to="value" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.stringconstant.StringConstantConfigurationBean xmlns=""> | |
<value>xml</value> | |
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<maxJobs>1</maxJobs> | |
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<backoffFactor>1.0</backoffFactor> | |
<initialDelay>1000</initialDelay> | |
<maxDelay>5000</maxDelay> | |
<maxRetries>0</maxRetries> | |
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<value>""</value> | |
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<maxJobs>1</maxJobs> | |
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<backoffFactor>1.0</backoffFactor> | |
<initialDelay>1000</initialDelay> | |
<maxDelay>5000</maxDelay> | |
<maxRetries>0</maxRetries> | |
</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>0.8</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer></dispatchStack><iterationStrategyStack><iteration><strategy /></iteration></iterationStrategyStack></processor><processor><name>filter_value</name><inputPorts /><outputPorts><port><name>value</name><depth>0</depth><granularDepth>0</granularDepth></port></outputPorts><annotations /><activities><activity><raven><group>net.sf.taverna.t2.activities</group><artifact>stringconstant-activity</artifact><version>0.8</version></raven><class>net.sf.taverna.t2.activities.stringconstant.StringConstantActivity</class><inputMap /><outputMap><map from="value" to="value" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.stringconstant.StringConstantConfigurationBean xmlns=""> | |
<value /> | |
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<maxJobs>1</maxJobs> | |
</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>0.8</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBounce</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>0.8</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failover</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>0.8</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig xmlns=""> | |
<backoffFactor>1.0</backoffFactor> | |
<initialDelay>1000</initialDelay> | |
<maxDelay>5000</maxDelay> | |
<maxRetries>0</maxRetries> | |
</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>0.8</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer></dispatchStack><iterationStrategyStack><iteration><strategy /></iteration></iterationStrategyStack></processor></processors><conditions /><datalinks><datalink><sink type="processor"><processor>SentenceSplitter</processor><port>parameters</port></sink><source type="processor"><processor>SentenceSplitter_input</processor><port>output</port></source></datalink><datalink><sink type="processor"><processor>SentenceSplitter_input</processor><port>text</port></sink><source type="dataflow"><port>InputText</port></source></datalink><datalink><sink type="processor"><processor>SentenceSplitter_input</processor><port>formatFlag</port></sink><source type="processor"><processor>formatFlag_value</processor><port>value</port></source></datalink><datalink><sink type="processor"><processor>SentenceSplitter_output</processor><port>input</port></sink><source type="processor"><processor>SentenceSplitter</processor><port>parameters</port></source></datalink><datalink><sink type="processor"><processor>TerMine</processor><port>src</port></sink><source type="processor"><processor>SentenceSplitter_output</processor><port>return</port></source></datalink><datalink><sink type="processor"><processor>TerMine</processor><port>input_format</port></sink><source type="processor"><processor>input_format_value</processor><port>value</port></source></datalink><datalink><sink type="processor"><processor>TerMine</processor><port>output_format</port></sink><source type="processor"><processor>output_format_value</processor><port>value</port></source></datalink><datalink><sink type="processor"><processor>TerMine</processor><port>stoplist</port></sink><source type="processor"><processor>stoplist_value</processor><port>value</port></source></datalink><datalink><sink type="processor"><processor>TerMine</processor><port>filter</port></sink><source type="processor"><processor>filter_value</processor><port>value</port></source></datalink><datalink><sink type="dataflow"><port>Terms</port></sink><source type="processor"><processor>TerMine</processor><port>result</port></source></datalink></datalinks><annotations><annotation_chain encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns=""> | |
<annotationAssertions> | |
<net.sf.taverna.t2.annotation.AnnotationAssertionImpl> | |
<annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.DescriptiveTitle"> | |
<text>Term Extraction using NaCTeM's TerMine tool.</text> | |
</annotationBean> | |
<date>2009-07-23 16:55:16.0 BST</date> | |
<creators /> | |
<curationEventList /> | |
</net.sf.taverna.t2.annotation.AnnotationAssertionImpl> | |
</annotationAssertions> | |
</net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain><annotation_chain encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns=""> | |
<annotationAssertions> | |
<net.sf.taverna.t2.annotation.AnnotationAssertionImpl> | |
<annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.FreeTextDescription"> | |
<text>Pass in text and retrieve a list of terms discovered ranked by their importance within the text.</text> | |
</annotationBean> | |
<date>2009-07-23 16:55:48.328 BST</date> | |
<creators /> | |
<curationEventList /> | |
</net.sf.taverna.t2.annotation.AnnotationAssertionImpl> | |
</annotationAssertions> | |
</net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain><annotation_chain encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns=""> | |
<annotationAssertions> | |
<net.sf.taverna.t2.annotation.AnnotationAssertionImpl> | |
<annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.Author"> | |
<text>Brian Rea - National Centre for Text Mining (NaCTeM), University of Manchester</text> | |
</annotationBean> | |
<date>2009-07-23 16:54:56.921 BST</date> | |
<creators /> | |
<curationEventList /> | |
</net.sf.taverna.t2.annotation.AnnotationAssertionImpl> | |
</annotationAssertions> | |
</net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain></annotations></dataflow></workflow> |