Change components package and clean unused imports throught the project
diff --git a/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/CWLParser.java b/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/CWLParser.java
index 63e70d1..3b3879c 100644
--- a/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/CWLParser.java
+++ b/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/CWLParser.java
@@ -22,16 +22,10 @@
import java.util.Set;
import java.util.HashSet;
-import org.apache.taverna.scufl2.api.core.Workflow;
-import org.apache.taverna.scufl2.api.core.Processor;
-
-import org.apache.taverna.scufl2.api.port.InputWorkflowPort;
-import org.apache.taverna.scufl2.api.port.OutputWorkflowPort;
-import org.apache.taverna.scufl2.api.port.InputProcessorPort;
-import org.apache.taverna.scufl2.api.port.OutputProcessorPort;
-
import com.fasterxml.jackson.databind.JsonNode;
+import org.apache.taverna.scufl2.cwl.components.*;
+
public class CWLParser {
private JsonNode cwlFile;
diff --git a/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/CWLReader.java b/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/CWLReader.java
index de9d799..1b5afc7 100644
--- a/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/CWLReader.java
+++ b/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/CWLReader.java
@@ -27,6 +27,7 @@
import org.apache.taverna.scufl2.api.io.WorkflowBundleReader;
import org.apache.taverna.scufl2.api.io.ReaderException;
+import org.apache.taverna.scufl2.cwl.components.*;
public class CWLReader implements WorkflowBundleReader {
diff --git a/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/Converter.java b/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/Converter.java
index 5cfd9ce..2f77d05 100644
--- a/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/Converter.java
+++ b/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/Converter.java
@@ -21,7 +21,6 @@
import java.util.Set;
import java.util.HashSet;
import java.util.Map;
-import java.util.HashMap;
import org.apache.taverna.scufl2.api.core.Workflow;
import org.apache.taverna.scufl2.api.core.Processor;
@@ -37,6 +36,9 @@
import com.fasterxml.jackson.databind.node.ArrayNode;
import com.fasterxml.jackson.databind.node.JsonNodeFactory;
+import org.apache.taverna.scufl2.cwl.components.Process;
+import org.apache.taverna.scufl2.cwl.components.*;
+
public class Converter {
private JsonNodeFactory jsonNodeFactory;
diff --git a/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/WorkflowParser.java b/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/WorkflowParser.java
index 2680bf4..24b5238 100644
--- a/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/WorkflowParser.java
+++ b/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/WorkflowParser.java
@@ -49,6 +49,8 @@
import org.apache.taverna.scufl2.api.io.WorkflowBundleIO;
import org.apache.taverna.scufl2.api.io.WriterException;
+import org.apache.taverna.scufl2.cwl.components.*;
+
public class WorkflowParser {
private static final String FILE_NAME = "/hello_world.cwl";
diff --git a/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/YAMLHelper.java b/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/YAMLHelper.java
index 1b016f8..f745386 100644
--- a/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/YAMLHelper.java
+++ b/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/YAMLHelper.java
@@ -36,6 +36,9 @@
import com.fasterxml.jackson.databind.node.ObjectNode;
import com.fasterxml.jackson.databind.node.TextNode;
+import org.apache.taverna.scufl2.cwl.components.Process;
+import org.apache.taverna.scufl2.cwl.components.*;
+
public class YAMLHelper {
public static final String ARRAY_SPLIT_BRACKETS = "\\[\\]";
diff --git a/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/CommandLineTool.java b/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/CommandLineTool.java
index dc5e16d..eca00fa 100644
--- a/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/CommandLineTool.java
+++ b/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/CommandLineTool.java
@@ -17,7 +17,7 @@
* under the License.
*/
-package org.apache.taverna.scufl2.cwl;
+package org.apache.taverna.scufl2.cwl.components;
import java.util.Set;
import java.util.Map;
@@ -28,6 +28,9 @@
import org.apache.taverna.scufl2.api.port.InputProcessorPort;
import org.apache.taverna.scufl2.api.port.OutputProcessorPort;
+
+import org.apache.taverna.scufl2.cwl.*;
+
public class CommandLineTool extends Process {
private final static String BASE_COMMAND = "baseCommand";
diff --git a/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/InputPort.java b/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/InputPort.java
index 1d1522d..1b44a27 100644
--- a/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/InputPort.java
+++ b/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/InputPort.java
@@ -17,7 +17,7 @@
* under the License.
*/
-package org.apache.taverna.scufl2.cwl;
+package org.apache.taverna.scufl2.cwl.components;
public class InputPort {
diff --git a/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/OutputPort.java b/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/OutputPort.java
index c865e9c..ac7c139 100644
--- a/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/OutputPort.java
+++ b/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/OutputPort.java
@@ -17,7 +17,7 @@
* under the License.
*/
-package org.apache.taverna.scufl2.cwl;
+package org.apache.taverna.scufl2.cwl.components;
public class OutputPort {
diff --git a/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/PortDetail.java b/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/PortDetail.java
index 53604e7..cbfdae9 100644
--- a/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/PortDetail.java
+++ b/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/PortDetail.java
@@ -17,15 +17,13 @@
* under the License.
*/
-package org.apache.taverna.scufl2.cwl;
+package org.apache.taverna.scufl2.cwl.components;
import java.util.ArrayList;
public class PortDetail {
-
-
private String id;
private String label;
private int depth;
diff --git a/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/Process.java b/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/Process.java
index 991df0a..74f2f5f 100644
--- a/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/Process.java
+++ b/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/Process.java
@@ -17,7 +17,7 @@
* under the License.
*/
-package org.apache.taverna.scufl2.cwl;
+package org.apache.taverna.scufl2.cwl.components;
import java.util.HashSet;
import java.util.Set;
diff --git a/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/ProcessFactory.java b/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/ProcessFactory.java
index 301d417..6fa5569 100644
--- a/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/ProcessFactory.java
+++ b/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/ProcessFactory.java
@@ -17,7 +17,7 @@
* under the License.
*/
-package org.apache.taverna.scufl2.cwl;
+package org.apache.taverna.scufl2.cwl.components;
import com.fasterxml.jackson.databind.JsonNode;
diff --git a/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/Reference.java b/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/Reference.java
index 9d5d0c0..f51f48b 100644
--- a/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/Reference.java
+++ b/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/Reference.java
@@ -17,9 +17,8 @@
* under the License.
*/
-package org.apache.taverna.scufl2.cwl;
+package org.apache.taverna.scufl2.cwl.components;
-import com.fasterxml.jackson.databind.JsonNode;
public class Reference extends Process {
diff --git a/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/Step.java b/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/Step.java
index 80ccf03..aab6b65 100644
--- a/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/Step.java
+++ b/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/Step.java
@@ -17,10 +17,9 @@
* under the License.
*/
-package org.apache.taverna.scufl2.cwl;
+package org.apache.taverna.scufl2.cwl.components;
-import java.util.ArrayList;
import java.util.Set;
import java.util.HashSet;
diff --git a/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/WorkflowProcess.java b/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/WorkflowProcess.java
index a8e6607..3a19d3a 100644
--- a/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/WorkflowProcess.java
+++ b/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/WorkflowProcess.java
@@ -17,7 +17,7 @@
* under the License.
*/
-package org.apache.taverna.scufl2.cwl;
+package org.apache.taverna.scufl2.cwl.components;
import java.util.Set;
import java.util.HashSet;
@@ -30,7 +30,6 @@
import org.apache.taverna.scufl2.api.core.Processor;
import org.apache.taverna.scufl2.api.core.DataLink;
-import org.apache.taverna.scufl2.api.core.Workflow;
import org.apache.taverna.scufl2.api.port.InputWorkflowPort;
import org.apache.taverna.scufl2.api.port.OutputWorkflowPort;
@@ -41,6 +40,8 @@
import com.fasterxml.jackson.databind.JsonNode;
+import org.apache.taverna.scufl2.cwl.*;
+
public class WorkflowProcess extends Process {
private CWLParser cwlParser;
diff --git a/taverna-scufl2-cwl/src/test/java/org/apache/taverna/scufl2/cwl/TestConverting.java b/taverna-scufl2-cwl/src/test/java/org/apache/taverna/scufl2/cwl/TestConverting.java
index 2b34a3c..56885b2 100644
--- a/taverna-scufl2-cwl/src/test/java/org/apache/taverna/scufl2/cwl/TestConverting.java
+++ b/taverna-scufl2-cwl/src/test/java/org/apache/taverna/scufl2/cwl/TestConverting.java
@@ -19,7 +19,6 @@
package org.apache.taverna.scufl2.cwl;
-import org.junit.Before;
import org.junit.Test;
import static org.junit.Assert.assertEquals;
@@ -27,12 +26,13 @@
import com.fasterxml.jackson.databind.JsonNode;
import com.fasterxml.jackson.databind.ObjectMapper;
-import com.fasterxml.jackson.dataformat.yaml.YAMLMapper;
import org.apache.taverna.scufl2.api.container.WorkflowBundle;
import org.apache.taverna.scufl2.api.core.Workflow;
import org.apache.taverna.scufl2.api.core.Processor;
+import org.apache.taverna.scufl2.cwl.components.*;
+
public class TestConverting {
private static final String HELLO_WORLD_CWL = "/hello_world.cwl";
private static final String WORKFLOW_WITH_COMMAND = "/workflow_with_command.cwl";
diff --git a/taverna-scufl2-cwl/src/test/java/org/apache/taverna/scufl2/cwl/TestParser.java b/taverna-scufl2-cwl/src/test/java/org/apache/taverna/scufl2/cwl/TestParser.java
index 20c494c..a4ea204 100644
--- a/taverna-scufl2-cwl/src/test/java/org/apache/taverna/scufl2/cwl/TestParser.java
+++ b/taverna-scufl2-cwl/src/test/java/org/apache/taverna/scufl2/cwl/TestParser.java
@@ -28,10 +28,8 @@
import org.yaml.snakeyaml.Yaml;
-import com.fasterxml.jackson.core.type.TypeReference;
import com.fasterxml.jackson.databind.JsonNode;
import com.fasterxml.jackson.databind.ObjectMapper;
-import com.fasterxml.jackson.databind.node.ArrayNode;
import org.apache.taverna.scufl2.api.core.Workflow;
import org.apache.taverna.scufl2.api.core.Processor;
@@ -40,7 +38,6 @@
import org.apache.taverna.scufl2.api.common.NamedSet;
import org.apache.taverna.scufl2.api.port.InputWorkflowPort;
-import org.apache.taverna.scufl2.api.port.OutputWorkflowPort;
import org.apache.taverna.scufl2.api.port.InputProcessorPort;
diff --git a/taverna-scufl2-cwl/src/test/java/org/apache/taverna/scufl2/cwl/TestWorkflowNesting.java b/taverna-scufl2-cwl/src/test/java/org/apache/taverna/scufl2/cwl/TestWorkflowNesting.java
index d0f3e88..e0a4330 100644
--- a/taverna-scufl2-cwl/src/test/java/org/apache/taverna/scufl2/cwl/TestWorkflowNesting.java
+++ b/taverna-scufl2-cwl/src/test/java/org/apache/taverna/scufl2/cwl/TestWorkflowNesting.java
@@ -19,12 +19,7 @@
package org.apache.taverna.scufl2.cwl;
-import java.io.File;
-import java.io.IOException;
import java.util.Set;
-import java.util.HashSet;
-import java.util.Map;
-import java.util.HashMap;
import org.junit.Test;
import static org.junit.Assert.assertEquals;
@@ -33,19 +28,10 @@
import com.fasterxml.jackson.databind.JsonNode;
import com.fasterxml.jackson.databind.ObjectMapper;
-import com.fasterxml.jackson.dataformat.yaml.YAMLMapper;
-import com.fasterxml.jackson.core.JsonProcessingException;
+import org.apache.taverna.scufl2.cwl.components.Process;
+import org.apache.taverna.scufl2.cwl.components.*;
-import org.apache.taverna.scufl2.api.core.Workflow;
-
-import org.apache.taverna.scufl2.api.port.InputWorkflowPort;
-import org.apache.taverna.scufl2.api.port.OutputWorkflowPort;
-
-import org.apache.taverna.scufl2.api.io.WorkflowBundleIO;
-import org.apache.taverna.scufl2.api.io.WriterException;
-
-import org.apache.taverna.scufl2.api.container.WorkflowBundle;
public class TestWorkflowNesting {
private static final String HELLO_WORLD_CWL = "/hello_world.cwl";
diff --git a/taverna-scufl2-cwl/src/test/java/org/apache/taverna/scufl2/cwl/TestWorkflowProcess.java b/taverna-scufl2-cwl/src/test/java/org/apache/taverna/scufl2/cwl/TestWorkflowProcess.java
index 4b3bba7..e622668 100644
--- a/taverna-scufl2-cwl/src/test/java/org/apache/taverna/scufl2/cwl/TestWorkflowProcess.java
+++ b/taverna-scufl2-cwl/src/test/java/org/apache/taverna/scufl2/cwl/TestWorkflowProcess.java
@@ -47,6 +47,10 @@
import org.apache.taverna.scufl2.api.container.WorkflowBundle;
+import org.apache.taverna.scufl2.cwl.components.Process;
+import org.apache.taverna.scufl2.cwl.components.*;
+
+
public class TestWorkflowProcess {
private static final String HELLO_WORLD_CWL = "/hello_world.cwl";
private static final String WORKFLOW_WITH_COMMAND = "/workflow_with_command.cwl";
