taverna-scufl2-wfbundle/src/test/resources/org/apache/taverna/scufl2/rdfxml/megaProfile.rdf - incubator-taverna-language - Git at Google

 <?xml version="1.0" encoding="UTF-8" standalone="yes"?>
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  Licensed to the Apache Software Foundation (ASF) under one
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  regarding copyright ownership.  The ASF licenses this file
  to you under the Apache License, Version 2.0 (the
  "License"); you may not use this file except in compliance
  with the License.  You may obtain a copy of the License at

    http://www.apache.org/licenses/LICENSE-2.0

  Unless required by applicable law or agreed to in writing,
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 <rdf:RDF xmlns="http://ns.taverna.org.uk/2010/scufl2#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:owl="http://www.w3.org/2002/07/owl#" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:type="ProfileDocument" xml:base="taverna-2.2.0/" xsi:schemaLocation="http://ns.taverna.org.uk/2010/scufl2# http://ns.taverna.org.uk/2010/scufl2/scufl2.xsd http://www.w3.org/1999/02/22-rdf-syntax-ns# http://ns.taverna.org.uk/2010/scufl2/rdf.xsd">
     <Profile rdf:about="">
         <name>taverna-2.2.0</name>
         <activateConfiguration rdf:resource="configuration/Content_list/"/>
         <activateConfiguration rdf:resource="configuration/Format_as_GFF/"/>
         <activateConfiguration rdf:resource="configuration/Get_XML_result/"/>
         <activateConfiguration rdf:resource="configuration/Get_XML_result_type_defaultValue/"/>
         <activateConfiguration rdf:resource="configuration/Get_text_result/"/>
         <activateConfiguration rdf:resource="configuration/Get_text_result_type_defaultValue/"/>
         <activateConfiguration rdf:resource="configuration/Input_data/"/>
         <activateConfiguration rdf:resource="configuration/Input_data_type_defaultValue/"/>
         <activateConfiguration rdf:resource="configuration/Job_params/"/>
         <activateConfiguration rdf:resource="configuration/Job_params_async_defaultValue/"/>
         <activateConfiguration rdf:resource="configuration/Job_params_crc_defaultValue/"/>
         <activateConfiguration rdf:resource="configuration/Job_params_goterms_defaultValue/"/>
         <activateConfiguration rdf:resource="configuration/Job_params_seqtype_defaultValue/"/>
         <activateConfiguration rdf:resource="configuration/Unpack_XML_result/"/>
         <activateConfiguration rdf:resource="configuration/Unpack_text_result/"/>
         <activateConfiguration rdf:resource="configuration/checkStatus/"/>
         <activateConfiguration rdf:resource="configuration/runInterProScan/"/>
     </Profile>
     <Activity rdf:about="activity/Content_list/">
         <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/xml-splitter/in"/>
         <name>Content_list</name>
         <inputActivityPort>
             <InputActivityPort rdf:about="activity/Content_list/in/WSArrayofData">
                 <name>WSArrayofData</name>
                 <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">1</portDepth>
             </InputActivityPort>
         </inputActivityPort>
         <outputActivityPort>
             <OutputActivityPort rdf:about="activity/Content_list/out/output">
                 <name>output</name>
                 <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</portDepth>
                 <granularPortDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</granularPortDepth>
             </OutputActivityPort>
         </outputActivityPort>
     </Activity>
     <Activity rdf:about="activity/Format_as_GFF/">
         <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/beanshell"/>
         <name>Format_as_GFF</name>
         <inputActivityPort>
             <InputActivityPort rdf:about="activity/Format_as_GFF/in/interproscan_text">
                 <name>interproscan_text</name>
                 <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</portDepth>
             </InputActivityPort>
         </inputActivityPort>
         <outputActivityPort>
             <OutputActivityPort rdf:about="activity/Format_as_GFF/out/interproscan_gff">
                 <name>interproscan_gff</name>
                 <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</portDepth>
                 <granularPortDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</granularPortDepth>
             </OutputActivityPort>
         </outputActivityPort>
     </Activity>
     <Activity rdf:about="activity/Get_XML_result/">
         <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/wsdl"/>
         <name>Get_XML_result</name>
         <inputActivityPort>
             <InputActivityPort rdf:about="activity/Get_XML_result/in/jobid">
                 <name>jobid</name>
             </InputActivityPort>
         </inputActivityPort>
         <inputActivityPort>
             <InputActivityPort rdf:about="activity/Get_XML_result/in/type">
                 <name>type</name>
             </InputActivityPort>
         </inputActivityPort>
         <outputActivityPort>
             <OutputActivityPort rdf:about="activity/Get_XML_result/out/attachmentList">
                 <name>attachmentList</name>
             </OutputActivityPort>
         </outputActivityPort>
         <outputActivityPort>
             <OutputActivityPort rdf:about="activity/Get_XML_result/out/result">
                 <name>result</name>
             </OutputActivityPort>
         </outputActivityPort>
     </Activity>
     <Activity rdf:about="activity/Get_XML_result_type_defaultValue/">
         <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/constant"/>
         <name>Get_XML_result_type_defaultValue</name>
         <outputActivityPort>
             <OutputActivityPort rdf:about="activity/Get_XML_result_type_defaultValue/out/value">
                 <name>value</name>
             </OutputActivityPort>
         </outputActivityPort>
     </Activity>
     <Activity rdf:about="activity/Get_text_result/">
         <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/wsdl"/>
         <name>Get_text_result</name>
         <inputActivityPort>
             <InputActivityPort rdf:about="activity/Get_text_result/in/jobid">
                 <name>jobid</name>
             </InputActivityPort>
         </inputActivityPort>
         <inputActivityPort>
             <InputActivityPort rdf:about="activity/Get_text_result/in/type">
                 <name>type</name>
             </InputActivityPort>
         </inputActivityPort>
         <outputActivityPort>
             <OutputActivityPort rdf:about="activity/Get_text_result/out/attachmentList">
                 <name>attachmentList</name>
             </OutputActivityPort>
         </outputActivityPort>
         <outputActivityPort>
             <OutputActivityPort rdf:about="activity/Get_text_result/out/result">
                 <name>result</name>
             </OutputActivityPort>
         </outputActivityPort>
     </Activity>
     <Activity rdf:about="activity/Get_text_result_type_defaultValue/">
         <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/constant"/>
         <name>Get_text_result_type_defaultValue</name>
         <outputActivityPort>
             <OutputActivityPort rdf:about="activity/Get_text_result_type_defaultValue/out/value">
                 <name>value</name>
             </OutputActivityPort>
         </outputActivityPort>
     </Activity>
     <Activity rdf:about="activity/Input_data/">
         <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/xml-splitter/in"/>
         <name>Input_data</name>
         <inputActivityPort>
             <InputActivityPort rdf:about="activity/Input_data/in/content">
                 <name>content</name>
                 <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</portDepth>
             </InputActivityPort>
         </inputActivityPort>
         <inputActivityPort>
             <InputActivityPort rdf:about="activity/Input_data/in/type">
                 <name>type</name>
                 <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</portDepth>
             </InputActivityPort>
         </inputActivityPort>
         <outputActivityPort>
             <OutputActivityPort rdf:about="activity/Input_data/out/output">
                 <name>output</name>
                 <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</portDepth>
                 <granularPortDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</granularPortDepth>
             </OutputActivityPort>
         </outputActivityPort>
     </Activity>
     <Activity rdf:about="activity/Input_data_type_defaultValue/">
         <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/constant"/>
         <name>Input_data_type_defaultValue</name>
         <outputActivityPort>
             <OutputActivityPort rdf:about="activity/Input_data_type_defaultValue/out/value">
                 <name>value</name>
             </OutputActivityPort>
         </outputActivityPort>
     </Activity>
     <Activity rdf:about="activity/Job_params/">
         <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/xml-splitter/in"/>
         <name>Job_params</name>
         <inputActivityPort>
             <InputActivityPort rdf:about="activity/Job_params/in/app">
                 <name>app</name>
                 <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</portDepth>
             </InputActivityPort>
         </inputActivityPort>
         <inputActivityPort>
             <InputActivityPort rdf:about="activity/Job_params/in/async">
                 <name>async</name>
                 <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</portDepth>
             </InputActivityPort>
         </inputActivityPort>
         <inputActivityPort>
             <InputActivityPort rdf:about="activity/Job_params/in/crc">
                 <name>crc</name>
                 <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</portDepth>
             </InputActivityPort>
         </inputActivityPort>
         <inputActivityPort>
             <InputActivityPort rdf:about="activity/Job_params/in/email">
                 <name>email</name>
                 <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</portDepth>
             </InputActivityPort>
         </inputActivityPort>
         <inputActivityPort>
             <InputActivityPort rdf:about="activity/Job_params/in/goterms">
                 <name>goterms</name>
                 <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</portDepth>
             </InputActivityPort>
         </inputActivityPort>
         <inputActivityPort>
             <InputActivityPort rdf:about="activity/Job_params/in/outformat">
                 <name>outformat</name>
                 <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</portDepth>
             </InputActivityPort>
         </inputActivityPort>
         <inputActivityPort>
             <InputActivityPort rdf:about="activity/Job_params/in/seqtype">
                 <name>seqtype</name>
                 <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</portDepth>
             </InputActivityPort>
         </inputActivityPort>
         <inputActivityPort>
             <InputActivityPort rdf:about="activity/Job_params/in/trlen">
                 <name>trlen</name>
                 <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</portDepth>
             </InputActivityPort>
         </inputActivityPort>
         <inputActivityPort>
             <InputActivityPort rdf:about="activity/Job_params/in/trtable">
                 <name>trtable</name>
                 <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</portDepth>
             </InputActivityPort>
         </inputActivityPort>
         <outputActivityPort>
             <OutputActivityPort rdf:about="activity/Job_params/out/output">
                 <name>output</name>
                 <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</portDepth>
                 <granularPortDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</granularPortDepth>
             </OutputActivityPort>
         </outputActivityPort>
     </Activity>
     <Activity rdf:about="activity/Job_params_async_defaultValue/">
         <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/constant"/>
         <name>Job_params_async_defaultValue</name>
         <outputActivityPort>
             <OutputActivityPort rdf:about="activity/Job_params_async_defaultValue/out/value">
                 <name>value</name>
             </OutputActivityPort>
         </outputActivityPort>
     </Activity>
     <Activity rdf:about="activity/Job_params_crc_defaultValue/">
         <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/constant"/>
         <name>Job_params_crc_defaultValue</name>
         <outputActivityPort>
             <OutputActivityPort rdf:about="activity/Job_params_crc_defaultValue/out/value">
                 <name>value</name>
             </OutputActivityPort>
         </outputActivityPort>
     </Activity>
     <Activity rdf:about="activity/Job_params_goterms_defaultValue/">
         <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/constant"/>
         <name>Job_params_goterms_defaultValue</name>
         <outputActivityPort>
             <OutputActivityPort rdf:about="activity/Job_params_goterms_defaultValue/out/value">
                 <name>value</name>
             </OutputActivityPort>
         </outputActivityPort>
     </Activity>
     <Activity rdf:about="activity/Job_params_seqtype_defaultValue/">
         <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/constant"/>
         <name>Job_params_seqtype_defaultValue</name>
         <outputActivityPort>
             <OutputActivityPort rdf:about="activity/Job_params_seqtype_defaultValue/out/value">
                 <name>value</name>
             </OutputActivityPort>
         </outputActivityPort>
     </Activity>
     <Activity rdf:about="activity/Unpack_XML_result/">
         <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/beanshell"/>
         <name>Unpack_XML_result</name>
         <inputActivityPort>
             <InputActivityPort rdf:about="activity/Unpack_XML_result/in/bytes">
                 <name>bytes</name>
                 <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</portDepth>
             </InputActivityPort>
         </inputActivityPort>
         <outputActivityPort>
             <OutputActivityPort rdf:about="activity/Unpack_XML_result/out/string">
                 <name>string</name>
                 <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</portDepth>
                 <granularPortDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</granularPortDepth>
             </OutputActivityPort>
         </outputActivityPort>
     </Activity>
     <Activity rdf:about="activity/Unpack_text_result/">
         <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/beanshell"/>
         <name>Unpack_text_result</name>
         <inputActivityPort>
             <InputActivityPort rdf:about="activity/Unpack_text_result/in/bytes">
                 <name>bytes</name>
                 <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</portDepth>
             </InputActivityPort>
         </inputActivityPort>
         <outputActivityPort>
             <OutputActivityPort rdf:about="activity/Unpack_text_result/out/string">
                 <name>string</name>
                 <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</portDepth>
                 <granularPortDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</granularPortDepth>
             </OutputActivityPort>
         </outputActivityPort>
     </Activity>
     <Activity rdf:about="activity/checkStatus/">
         <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/wsdl"/>
         <name>checkStatus</name>
         <inputActivityPort>
             <InputActivityPort rdf:about="activity/checkStatus/in/jobid">
                 <name>jobid</name>
             </InputActivityPort>
         </inputActivityPort>
         <outputActivityPort>
             <OutputActivityPort rdf:about="activity/checkStatus/out/status">
                 <name>status</name>
             </OutputActivityPort>
         </outputActivityPort>
     </Activity>
     <Activity rdf:about="activity/runInterProScan/">
         <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/wsdl"/>
         <name>runInterProScan</name>
         <inputActivityPort>
             <InputActivityPort rdf:about="activity/runInterProScan/in/content">
                 <name>content</name>
             </InputActivityPort>
         </inputActivityPort>
         <inputActivityPort>
             <InputActivityPort rdf:about="activity/runInterProScan/in/params">
                 <name>params</name>
             </InputActivityPort>
         </inputActivityPort>
         <outputActivityPort>
             <OutputActivityPort rdf:about="activity/runInterProScan/out/attachmentList">
                 <name>attachmentList</name>
             </OutputActivityPort>
         </outputActivityPort>
         <outputActivityPort>
             <OutputActivityPort rdf:about="activity/runInterProScan/out/jobid">
                 <name>jobid</name>
             </OutputActivityPort>
         </outputActivityPort>
     </Activity>
     <Configuration rdf:about="configuration/Content_list/">
         <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/xml-splitter#Config"/>
         <name>Content_list</name>
         <configure rdf:resource="activity/Content_list/"/>
         <wrappedType:wrappedType xmlns:wrappedType="http://ns.taverna.org.uk/2010/activity/xml-splitter#" rdf:parseType="Literal">
             <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha">
                 <s:arraytype name="content" optional="false" qname="{http://www.ebi.ac.uk/WSInterProScan}WSArrayofData" typename="WSArrayofData" unbounded="false" wrapped="false">
                     <s:elementtype>
                         <s:complextype name="" optional="false" qname="{http://www.ebi.ac.uk/WSInterProScan}data" typename="data" unbounded="false">
                             <s:elements>
 <s:basetype name="type" optional="false" qname="data&gt;type" typename="string" unbounded="false"/>
 <s:basetype name="content" optional="false" qname="data&gt;content" typename="string" unbounded="false"/>
                             </s:elements>
                         </s:complextype>
                     </s:elementtype>
                 </s:arraytype>
             </s:extensions>
         </wrappedType:wrappedType>
         <inputPortDefinition>
             <InputPortDefinition>
                 <dataType rdf:resource="java:java.lang.String"/>
                 <definesInputPort rdf:resource="../../activity/Content_list/in/WSArrayofData"/>
                 <expectedMimeType rdf:resource="http://purl.org/NET/mediatypes/text/xml"/>
             </InputPortDefinition>
         </inputPortDefinition>
         <outputPortDefinition>
             <OutputPortDefinition>
                 <definesOutputPort rdf:resource="../../activity/Content_list/out/output"/>
                 <expectedMimeType rdf:resource="http://purl.org/NET/mediatypes/text/xml"/>
             </OutputPortDefinition>
         </outputPortDefinition>
     </Configuration>
     <Configuration rdf:about="configuration/Format_as_GFF/">
         <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/beanshell#Config"/>
         <name>Format_as_GFF</name>
         <configure rdf:resource="activity/Format_as_GFF/"/>
         <script:script xmlns:script="http://ns.taverna.org.uk/2010/activity/beanshell#">import java.util.StringTokenizer;

 interproscan_gff = &quot;&quot;;

 // Split into lines
 StringTokenizer tok1 = new StringTokenizer(interproscan_text, &quot;\n&quot;);
 while(tok1.hasMoreElements()) {
   feat1 = tok1.nextElement();
   // Split into fields
   StringTokenizer tok2 = new StringTokenizer(feat1, &quot;\t&quot;);
   fieldCount = 0;
   attributeStr = &quot;&quot;;
   while(tok2.hasMoreElements()) {
     fieldCount++;
     fieldStr = tok2.nextElement();
     if(fieldCount &lt; 2) { // First field is the ID
       interproscan_gff += fieldStr;
     }
     // The tool, feature, start and stop
     else if(fieldCount == 4 || (fieldCount &gt; 5 &amp;&amp; fieldCount &lt; 9)) {
       interproscan_gff += &quot;\t&quot; + fieldStr;
     }
     // Score
     else if(fieldCount == 9) {
       if(fieldStr.equals(&quot;NA&quot;)) {
         interproscan_gff += &quot;\t.&quot;;
       } else {
         interproscan_gff += &quot;\t&quot; + fieldStr;
       }
     }
     // Matching InterPro entry
     else if(fieldCount == 12 &amp;&amp; !fieldStr.equals(&quot;NULL&quot;)) {
       attributeStr += fieldStr;
     }
     // Matching InterPro entry name
     else if(fieldCount == 13 &amp;&amp; !fieldStr.equals(&quot;NULL&quot;)) {
       attributeStr += &quot; &quot; + fieldStr;
     }
   }
   interproscan_gff += &quot;\t.\t.\tInterProScan&quot;;
   if(attributeStr.length() &gt; 0) {
     interproscan_gff += &quot; ; &quot; + attributeStr;
   }
   interproscan_gff += &quot;\n&quot;;
 }</script:script>
         <inputPortDefinition>
             <InputPortDefinition>
                 <dataType rdf:resource="java:java.lang.String"/>
                 <definesInputPort rdf:resource="../../activity/Format_as_GFF/in/interproscan_text"/>
                 <expectedMimeType rdf:resource="http://purl.org/NET/mediatypes/text/plain"/>
             </InputPortDefinition>
         </inputPortDefinition>
         <outputPortDefinition>
             <OutputPortDefinition>
                 <definesOutputPort rdf:resource="../../activity/Format_as_GFF/out/interproscan_gff"/>
                 <expectedMimeType rdf:resource="http://purl.org/NET/mediatypes/text/plain"/>
             </OutputPortDefinition>
         </outputPortDefinition>
     </Configuration>
     <Configuration rdf:about="configuration/Get_XML_result/">
         <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/wsdl#Config"/>
         <name>Get_XML_result</name>
         <configure rdf:resource="activity/Get_XML_result/"/>
         <operation:operation xmlns:operation="http://ns.taverna.org.uk/2010/activity/wsdl#">
             <ns6:operation xmlns:ns6="http://ns.taverna.org.uk/2010/activity/wsdl/">
                 <name:name xmlns:name="http://ns.taverna.org.uk/2010/activity/wsdl/operation#">poll</name:name>
                 <wsdl:wsdl xmlns:wsdl="http://ns.taverna.org.uk/2010/activity/wsdl/operation#" rdf:resource="http://www.ebi.ac.uk/Tools/webservices/wsdl/WSInterProScan.wsdl"/>
             </ns6:operation>
         </operation:operation>
     </Configuration>
     <Configuration rdf:about="configuration/Get_XML_result_type_defaultValue/">
         <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/constant#Config"/>
         <name>Get_XML_result_type_defaultValue</name>
         <configure rdf:resource="activity/Get_XML_result_type_defaultValue/"/>
         <string:string xmlns:string="http://ns.taverna.org.uk/2010/activity/constant#">toolxml</string:string>
     </Configuration>
     <Configuration rdf:about="configuration/Get_text_result/">
         <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/wsdl#Config"/>
         <name>Get_text_result</name>
         <configure rdf:resource="activity/Get_text_result/"/>
         <operation:operation xmlns:operation="http://ns.taverna.org.uk/2010/activity/wsdl#">
             <ns6:operation xmlns:ns6="http://ns.taverna.org.uk/2010/activity/wsdl/">
                 <name:name xmlns:name="http://ns.taverna.org.uk/2010/activity/wsdl/operation#">poll</name:name>
                 <wsdl:wsdl xmlns:wsdl="http://ns.taverna.org.uk/2010/activity/wsdl/operation#" rdf:resource="http://www.ebi.ac.uk/Tools/webservices/wsdl/WSInterProScan.wsdl"/>
             </ns6:operation>
         </operation:operation>
     </Configuration>
     <Configuration rdf:about="configuration/Get_text_result_type_defaultValue/">
         <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/constant#Config"/>
         <name>Get_text_result_type_defaultValue</name>
         <configure rdf:resource="activity/Get_text_result_type_defaultValue/"/>
         <string:string xmlns:string="http://ns.taverna.org.uk/2010/activity/constant#">toolraw</string:string>
     </Configuration>
     <Configuration rdf:about="configuration/Input_data/">
         <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/xml-splitter#Config"/>
         <name>Input_data</name>
         <configure rdf:resource="activity/Input_data/"/>
         <wrappedType:wrappedType xmlns:wrappedType="http://ns.taverna.org.uk/2010/activity/xml-splitter#" rdf:parseType="Literal">
             <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha">
                 <s:complextype name="" optional="false" qname="{http://www.ebi.ac.uk/WSInterProScan}data" typename="data" unbounded="false">
                     <s:elements>
                         <s:basetype name="type" optional="false" qname="data&gt;type" typename="string" unbounded="false"/>
                         <s:basetype name="content" optional="false" qname="data&gt;content" typename="string" unbounded="false"/>
                     </s:elements>
                 </s:complextype>
             </s:extensions>
         </wrappedType:wrappedType>
         <inputPortDefinition>
             <InputPortDefinition>
                 <dataType rdf:resource="java:java.lang.String"/>
                 <definesInputPort rdf:resource="../../activity/Input_data/in/content"/>
                 <expectedMimeType rdf:resource="http://purl.org/NET/mediatypes/text/plain"/>
             </InputPortDefinition>
         </inputPortDefinition>
         <inputPortDefinition>
             <InputPortDefinition>
                 <dataType rdf:resource="java:java.lang.String"/>
                 <definesInputPort rdf:resource="../../activity/Input_data/in/type"/>
                 <expectedMimeType rdf:resource="http://purl.org/NET/mediatypes/text/plain"/>
             </InputPortDefinition>
         </inputPortDefinition>
         <outputPortDefinition>
             <OutputPortDefinition>
                 <definesOutputPort rdf:resource="../../activity/Input_data/out/output"/>
                 <expectedMimeType rdf:resource="http://purl.org/NET/mediatypes/text/xml"/>
             </OutputPortDefinition>
         </outputPortDefinition>
     </Configuration>
     <Configuration rdf:about="configuration/Input_data_type_defaultValue/">
         <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/constant#Config"/>
         <name>Input_data_type_defaultValue</name>
         <configure rdf:resource="activity/Input_data_type_defaultValue/"/>
         <string:string xmlns:string="http://ns.taverna.org.uk/2010/activity/constant#">sequence</string:string>
     </Configuration>
     <Configuration rdf:about="configuration/Job_params/">
         <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/xml-splitter#Config"/>
         <name>Job_params</name>
         <configure rdf:resource="activity/Job_params/"/>
         <wrappedType:wrappedType xmlns:wrappedType="http://ns.taverna.org.uk/2010/activity/xml-splitter#" rdf:parseType="Literal">
             <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha">
                 <s:complextype name="params" optional="false" qname="{http://www.ebi.ac.uk/WSInterProScan}inputParams" typename="inputParams" unbounded="false">
                     <s:elements>
                         <s:basetype name="app" optional="false" qname="inputParams&gt;app" typename="string" unbounded="false"/>
                         <s:basetype name="crc" optional="false" qname="inputParams&gt;crc" typename="boolean" unbounded="false"/>
                         <s:basetype name="seqtype" optional="false" qname="inputParams&gt;seqtype" typename="string" unbounded="false"/>
                         <s:basetype name="trlen" optional="false" qname="inputParams&gt;trlen" typename="int" unbounded="false"/>
                         <s:basetype name="trtable" optional="false" qname="inputParams&gt;trtable" typename="int" unbounded="false"/>
                         <s:basetype name="goterms" optional="false" qname="inputParams&gt;goterms" typename="boolean" unbounded="false"/>
                         <s:basetype name="async" optional="false" qname="inputParams&gt;async" typename="boolean" unbounded="false"/>
                         <s:basetype name="outformat" optional="false" qname="inputParams&gt;outformat" typename="string" unbounded="false"/>
                         <s:basetype name="email" optional="false" qname="inputParams&gt;email" typename="string" unbounded="false"/>
                     </s:elements>
                 </s:complextype>
             </s:extensions>
         </wrappedType:wrappedType>
         <inputPortDefinition>
             <InputPortDefinition>
                 <dataType rdf:resource="java:java.lang.String"/>
                 <definesInputPort rdf:resource="../../activity/Job_params/in/app"/>
                 <expectedMimeType rdf:resource="http://purl.org/NET/mediatypes/text/plain"/>
             </InputPortDefinition>
         </inputPortDefinition>
         <inputPortDefinition>
             <InputPortDefinition>
                 <dataType rdf:resource="java:java.lang.String"/>
                 <definesInputPort rdf:resource="../../activity/Job_params/in/async"/>
                 <expectedMimeType rdf:resource="http://purl.org/NET/mediatypes/text/plain"/>
             </InputPortDefinition>
         </inputPortDefinition>
         <inputPortDefinition>
             <InputPortDefinition>
                 <dataType rdf:resource="java:java.lang.String"/>
                 <definesInputPort rdf:resource="../../activity/Job_params/in/crc"/>
                 <expectedMimeType rdf:resource="http://purl.org/NET/mediatypes/text/plain"/>
             </InputPortDefinition>
         </inputPortDefinition>
         <inputPortDefinition>
             <InputPortDefinition>
                 <dataType rdf:resource="java:java.lang.String"/>
                 <definesInputPort rdf:resource="../../activity/Job_params/in/email"/>
                 <expectedMimeType rdf:resource="http://purl.org/NET/mediatypes/text/plain"/>
             </InputPortDefinition>
         </inputPortDefinition>
         <inputPortDefinition>
             <InputPortDefinition>
                 <dataType rdf:resource="java:java.lang.String"/>
                 <definesInputPort rdf:resource="../../activity/Job_params/in/goterms"/>
                 <expectedMimeType rdf:resource="http://purl.org/NET/mediatypes/text/plain"/>
             </InputPortDefinition>
         </inputPortDefinition>
         <inputPortDefinition>
             <InputPortDefinition>
                 <dataType rdf:resource="java:java.lang.String"/>
                 <definesInputPort rdf:resource="../../activity/Job_params/in/outformat"/>
                 <expectedMimeType rdf:resource="http://purl.org/NET/mediatypes/text/plain"/>
             </InputPortDefinition>
         </inputPortDefinition>
         <inputPortDefinition>
             <InputPortDefinition>
                 <dataType rdf:resource="java:java.lang.String"/>
                 <definesInputPort rdf:resource="../../activity/Job_params/in/seqtype"/>
                 <expectedMimeType rdf:resource="http://purl.org/NET/mediatypes/text/plain"/>
             </InputPortDefinition>
         </inputPortDefinition>
         <inputPortDefinition>
             <InputPortDefinition>
                 <dataType rdf:resource="java:java.lang.String"/>
                 <definesInputPort rdf:resource="../../activity/Job_params/in/trlen"/>
                 <expectedMimeType rdf:resource="http://purl.org/NET/mediatypes/text/plain"/>
             </InputPortDefinition>
         </inputPortDefinition>
         <inputPortDefinition>
             <InputPortDefinition>
                 <dataType rdf:resource="java:java.lang.String"/>
                 <definesInputPort rdf:resource="../../activity/Job_params/in/trtable"/>
                 <expectedMimeType rdf:resource="http://purl.org/NET/mediatypes/text/plain"/>
             </InputPortDefinition>
         </inputPortDefinition>
         <outputPortDefinition>
             <OutputPortDefinition>
                 <definesOutputPort rdf:resource="../../activity/Job_params/out/output"/>
                 <expectedMimeType rdf:resource="http://purl.org/NET/mediatypes/text/xml"/>
             </OutputPortDefinition>
         </outputPortDefinition>
     </Configuration>
     <Configuration rdf:about="configuration/Job_params_async_defaultValue/">
         <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/constant#Config"/>
         <name>Job_params_async_defaultValue</name>
         <configure rdf:resource="activity/Job_params_async_defaultValue/"/>
         <string:string xmlns:string="http://ns.taverna.org.uk/2010/activity/constant#">1</string:string>
     </Configuration>
     <Configuration rdf:about="configuration/Job_params_crc_defaultValue/">
         <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/constant#Config"/>
         <name>Job_params_crc_defaultValue</name>
         <configure rdf:resource="activity/Job_params_crc_defaultValue/"/>
         <string:string xmlns:string="http://ns.taverna.org.uk/2010/activity/constant#">1</string:string>
     </Configuration>
     <Configuration rdf:about="configuration/Job_params_goterms_defaultValue/">
         <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/constant#Config"/>
         <name>Job_params_goterms_defaultValue</name>
         <configure rdf:resource="activity/Job_params_goterms_defaultValue/"/>
         <string:string xmlns:string="http://ns.taverna.org.uk/2010/activity/constant#">1</string:string>
     </Configuration>
     <Configuration rdf:about="configuration/Job_params_seqtype_defaultValue/">
         <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/constant#Config"/>
         <name>Job_params_seqtype_defaultValue</name>
         <configure rdf:resource="activity/Job_params_seqtype_defaultValue/"/>
         <string:string xmlns:string="http://ns.taverna.org.uk/2010/activity/constant#">p</string:string>
     </Configuration>
     <Configuration rdf:about="configuration/Unpack_XML_result/">
         <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/beanshell#Config"/>
         <name>Unpack_XML_result</name>
         <configure rdf:resource="activity/Unpack_XML_result/"/>
         <script:script xmlns:script="http://ns.taverna.org.uk/2010/activity/beanshell#">string = new String(bytes);
 </script:script>
         <inputPortDefinition>
             <InputPortDefinition>
                 <dataType rdf:resource="java:[B"/>
                 <definesInputPort rdf:resource="../../activity/Unpack_XML_result/in/bytes"/>
                 <expectedMimeType rdf:resource="http://purl.org/NET/mediatypes/application/octet-stream"/>
             </InputPortDefinition>
         </inputPortDefinition>
         <outputPortDefinition>
             <OutputPortDefinition>
                 <definesOutputPort rdf:resource="../../activity/Unpack_XML_result/out/string"/>
                 <expectedMimeType rdf:resource="http://purl.org/NET/mediatypes/text/plain"/>
             </OutputPortDefinition>
         </outputPortDefinition>
     </Configuration>
     <Configuration rdf:about="configuration/Unpack_text_result/">
         <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/beanshell#Config"/>
         <name>Unpack_text_result</name>
         <configure rdf:resource="activity/Unpack_text_result/"/>
         <script:script xmlns:script="http://ns.taverna.org.uk/2010/activity/beanshell#">string = new String(bytes);
 </script:script>
         <inputPortDefinition>
             <InputPortDefinition>
                 <dataType rdf:resource="java:[B"/>
                 <definesInputPort rdf:resource="../../activity/Unpack_text_result/in/bytes"/>
                 <expectedMimeType rdf:resource="http://purl.org/NET/mediatypes/application/octet-stream"/>
             </InputPortDefinition>
         </inputPortDefinition>
         <outputPortDefinition>
             <OutputPortDefinition>
                 <definesOutputPort rdf:resource="../../activity/Unpack_text_result/out/string"/>
                 <expectedMimeType rdf:resource="http://purl.org/NET/mediatypes/text/plain"/>
             </OutputPortDefinition>
         </outputPortDefinition>
     </Configuration>
     <Configuration rdf:about="configuration/checkStatus/">
         <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/wsdl#Config"/>
         <name>checkStatus</name>
         <configure rdf:resource="activity/checkStatus/"/>
         <operation:operation xmlns:operation="http://ns.taverna.org.uk/2010/activity/wsdl#">
             <ns6:operation xmlns:ns6="http://ns.taverna.org.uk/2010/activity/wsdl/">
                 <name:name xmlns:name="http://ns.taverna.org.uk/2010/activity/wsdl/operation#">checkStatus</name:name>
                 <wsdl:wsdl xmlns:wsdl="http://ns.taverna.org.uk/2010/activity/wsdl/operation#" rdf:resource="http://www.ebi.ac.uk/Tools/webservices/wsdl/WSInterProScan.wsdl"/>
             </ns6:operation>
         </operation:operation>
     </Configuration>
     <Configuration rdf:about="configuration/runInterProScan/">
         <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/wsdl#Config"/>
         <name>runInterProScan</name>
         <configure rdf:resource="activity/runInterProScan/"/>
         <operation:operation xmlns:operation="http://ns.taverna.org.uk/2010/activity/wsdl#">
             <ns6:operation xmlns:ns6="http://ns.taverna.org.uk/2010/activity/wsdl/">
                 <name:name xmlns:name="http://ns.taverna.org.uk/2010/activity/wsdl/operation#">runInterProScan</name:name>
                 <wsdl:wsdl xmlns:wsdl="http://ns.taverna.org.uk/2010/activity/wsdl/operation#" rdf:resource="http://www.ebi.ac.uk/Tools/webservices/wsdl/WSInterProScan.wsdl"/>
             </ns6:operation>
         </operation:operation>
     </Configuration>
 </rdf:RDF>