taverna-interaction-activity/src/main/resources/interaction.vm - incubator-taverna-common-activities - Git at Google

 #*
     Licensed to the Apache Software Foundation (ASF) under one or more
     contributor license agreements.  See the NOTICE file distributed with
     this work for additional information regarding copyright ownership.
     The ASF licenses this file to You under the Apache License, Version 2.0
     (the "License"); you may not use this file except in compliance with
     the License.  You may obtain a copy of the License at

     http://www.apache.org/licenses/LICENSE-2.0

     Unless required by applicable law or agreed to in writing, software
     distributed under the License is distributed on an "AS IS" BASIS,
     WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
     See the License for the specific language governing permissions and
     limitations under the License.
 *#

 <!doctype html>
 <html>
   <head>
       <meta charset="utf-8" />
       <title></title>
       <link rel="stylesheet" type="text/css" href="interaction.css">
        <script type="text/javascript" src="$pmrpcUrl"></script>

   </head>
   <body>

        <script type="text/javascript">

        var appendError = function(str){
          throw new Error("DEBUG: "+str)
        }

        function log(str){
          setTimeout("appendError('"+str+"')", 1)
        }

          function createReplyContent(status) {
            date = new Date();
            msg = "";
            msg += "<?xml version=\"1.0\" encoding=\"iso-8859-1\"?>\n";
            msg += "<entry xmlns=\"http://www.w3.org/2005/Atom\" xmlns:thr=\"http://purl.org/syndication/thread/1.0\">\n";
            msg += "<title>\"A reply to " + "$entryId" + "\"</title>\n";
            msg += "<id>" + "$entryId" + "reply" + "</id>\n";
            msg += "<content/>\n";
            msg += "<interaction:run-id xmlns:interaction=\"http://ns.taverna.org.uk/2012/interaction\">" + "$runId" + "</interaction:run-id>\n";
            msg += "<interaction:in-reply-to  xmlns:interaction=\"http://ns.taverna.org.uk/2012/interaction\">" + "$entryId" + "</interaction:in-reply-to>\n";
            msg += "<interaction:result-status xmlns:interaction=\"http://ns.taverna.org.uk/2012/interaction\">";
            msg += escape(status);
            msg += "</interaction:result-status>";
           msg += "</entry>\n";
            return msg;
          }

        // Copied from http://www.netlobo.com/url_query_string_javascript.html
        function getParameterValue( name )
 	{
   	name = name.replace(/[\[]/,"\\\[").replace(/[\]]/,"\\\]");
   	var regexS = "[\\?&]"+name+"=([^&#]*)";
   	var regex = new RegExp( regexS );
   	var results = regex.exec( window.location.href );
   	if( results == null )
     	return "";
   	else
     	return results[1];
 	}


          function reply(status, results) {
              document.getElementById('presentationDiv').innerHTML="<p>Returning results</p>";
 #if ($outputDataUrl)
            var outputData = JSON.stringify(results);
            var dataRequest = new XMLHttpRequest();
            dataRequest.open("PUT", "$outputDataUrl", false);
            dataRequest.setRequestHeader("Content-Type", "application/json");
            dataRequest.send(outputData);
 #end
            var msg = createReplyContent(status);
            var xmlhttp = new XMLHttpRequest();
            xmlhttp.open("POST", "$feed", false);
            xmlhttp.setRequestHeader("Content-Type", "application/atom+xml;type=entry");
            xmlhttp.setRequestHeader("Slug", "$entryId" + "-reply");
            xmlhttp.send(msg);
            var shownMessage = 'Returned results';
            if (status != 'OK') {
              shownMessage = status;
            }
            document.getElementById('presentationDiv').innerHTML="<p>" + shownMessage + "</p>";

            return false;
          }


 	  function getDataFromUrl(url, type) {
 	      var xmlhttp = new XMLHttpRequest();
 	      xmlhttp.open("GET", url, false);
 	      if (type != null) {
 			if (xmlhttp.overrideMimeType){
 				xmlhttp.overrideMimeType(type);
 			}
 			else{
 				xmlhttp.setRequestHeader("Content-Type",type);
 			}
 		  }
 	      xmlhttp.send();
 	      if (xmlhttp.status != 200) {
 	      	return '';
 	      }
 	      return xmlhttp.responseText;
 	  }

 	  var inputData = null;

       function registerCalls() {
 			pmrpc.register( {
          	  publicProcedureName : "reply",
          	  procedure : function(status, results) {
          	     reply(status, results);
          	     return "OK";
          	  }
            });

  			pmrpc.register( {
          	  publicProcedureName : "getParameterValue",
          	  procedure : function(parameterName) {
          	     return getParameterValue(parameterName);
          	  }
            });

            inputData = JSON.parse(getDataFromUrl('$inputDataUrl', "application/json"));

            pmrpc.register( {
              publicProcedureName : "getInputData",
              procedure : function() {
 //               log("Returning input data");
 #if (!$outputDataUrl)
                reply("OK", {});
 #end
                return inputData;
              }
            });

            pmrpc.register( {
              publicProcedureName : "getWorkflowRunId",
              procedure : function () {
                return '$runId';
              }
            });

          pmrpc.register( {
          	publicProcedureName : "setTitle",
          	procedure : function(title) {
          	   document.title = title;
          	   return "OK";
          	}
          });

          pmrpc.register( {
          	publicProcedureName : "getDataFromUrl",
          	procedure : function(url, type) {
          		return getDataFromUrl(url, type);
          	}
          });

          document.getElementById('presentationFrame').src = "$presentationUrl";
          document.title = 'Taverna interaction';
        }

        window.onload = function() {
 //           log("Interaction loaded");
            registerCalls();
            };

   	   </script>

      <div id="presentationDiv">
        <iframe id="presentationFrame" name="presentationFrame" src="about:blank">
 </iframe>
      </div>
      <div id="acknowledgment">
        <p>The interaction service was developed in the <a href="http://www.biovel.eu" target="_blank">BioVeL project</a></p>
      </div>
   </body>
 </html>
	#*
	Licensed to the Apache Software Foundation (ASF) under one or more
	contributor license agreements. See the NOTICE file distributed with
	this work for additional information regarding copyright ownership.
	The ASF licenses this file to You under the Apache License, Version 2.0
	(the "License"); you may not use this file except in compliance with
	the License. You may obtain a copy of the License at

	http://www.apache.org/licenses/LICENSE-2.0

	Unless required by applicable law or agreed to in writing, software
	distributed under the License is distributed on an "AS IS" BASIS,
	WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
	See the License for the specific language governing permissions and
	limitations under the License.
	*#

	<!doctype html>
	<html>
	<head>
	<meta charset="utf-8" />
	<title></title>
	<link rel="stylesheet" type="text/css" href="interaction.css">
	<script type="text/javascript" src="$pmrpcUrl"></script>

	</head>
	<body>

	<script type="text/javascript">

	var appendError = function(str){
	throw new Error("DEBUG: "+str)
	}

	function log(str){
	setTimeout("appendError('"+str+"')", 1)
	}

	function createReplyContent(status) {
	date = new Date();
	msg = "";
	msg += "<?xml version=\"1.0\" encoding=\"iso-8859-1\"?>\n";
	msg += "<entry xmlns=\"http://www.w3.org/2005/Atom\" xmlns:thr=\"http://purl.org/syndication/thread/1.0\">\n";
	msg += "<title>\"A reply to " + "$entryId" + "\"</title>\n";
	msg += "<id>" + "$entryId" + "reply" + "</id>\n";
	msg += "<content/>\n";
	msg += "<interaction:run-id xmlns:interaction=\"http://ns.taverna.org.uk/2012/interaction\">" + "$runId" + "</interaction:run-id>\n";
	msg += "<interaction:in-reply-to xmlns:interaction=\"http://ns.taverna.org.uk/2012/interaction\">" + "$entryId" + "</interaction:in-reply-to>\n";
	msg += "<interaction:result-status xmlns:interaction=\"http://ns.taverna.org.uk/2012/interaction\">";
	msg += escape(status);
	msg += "</interaction:result-status>";
	msg += "</entry>\n";
	return msg;
	}

	// Copied from http://www.netlobo.com/url_query_string_javascript.html
	function getParameterValue( name )
	{
	name = name.replace(/[\[]/,"\\\[").replace(/[\]]/,"\\\]");
	var regexS = "[\\?&]"+name+"=([^&#]*)";
	var regex = new RegExp( regexS );
	var results = regex.exec( window.location.href );
	if( results == null )
	return "";
	else
	return results[1];
	}


	function reply(status, results) {
	document.getElementById('presentationDiv').innerHTML="<p>Returning results</p>";
	#if ($outputDataUrl)
	var outputData = JSON.stringify(results);
	var dataRequest = new XMLHttpRequest();
	dataRequest.open("PUT", "$outputDataUrl", false);
	dataRequest.setRequestHeader("Content-Type", "application/json");
	dataRequest.send(outputData);
	#end
	var msg = createReplyContent(status);
	var xmlhttp = new XMLHttpRequest();
	xmlhttp.open("POST", "$feed", false);
	xmlhttp.setRequestHeader("Content-Type", "application/atom+xml;type=entry");
	xmlhttp.setRequestHeader("Slug", "$entryId" + "-reply");
	xmlhttp.send(msg);
	var shownMessage = 'Returned results';
	if (status != 'OK') {
	shownMessage = status;
	}
	document.getElementById('presentationDiv').innerHTML="<p>" + shownMessage + "</p>";

	return false;
	}


	function getDataFromUrl(url, type) {
	var xmlhttp = new XMLHttpRequest();
	xmlhttp.open("GET", url, false);
	if (type != null) {
	if (xmlhttp.overrideMimeType){
	xmlhttp.overrideMimeType(type);
	}
	else{
	xmlhttp.setRequestHeader("Content-Type",type);
	}
	}
	xmlhttp.send();
	if (xmlhttp.status != 200) {
	return '';
	}
	return xmlhttp.responseText;
	}

	var inputData = null;

	function registerCalls() {
	pmrpc.register( {
	publicProcedureName : "reply",
	procedure : function(status, results) {
	reply(status, results);
	return "OK";
	}
	});

	pmrpc.register( {
	publicProcedureName : "getParameterValue",
	procedure : function(parameterName) {
	return getParameterValue(parameterName);
	}
	});

	inputData = JSON.parse(getDataFromUrl('$inputDataUrl', "application/json"));

	pmrpc.register( {
	publicProcedureName : "getInputData",
	procedure : function() {
	// log("Returning input data");
	#if (!$outputDataUrl)
	reply("OK", {});
	#end
	return inputData;
	}
	});

	pmrpc.register( {
	publicProcedureName : "getWorkflowRunId",
	procedure : function () {
	return '$runId';
	}
	});

	pmrpc.register( {
	publicProcedureName : "setTitle",
	procedure : function(title) {
	document.title = title;
	return "OK";
	}
	});

	pmrpc.register( {
	publicProcedureName : "getDataFromUrl",
	procedure : function(url, type) {
	return getDataFromUrl(url, type);
	}
	});

	document.getElementById('presentationFrame').src = "$presentationUrl";
	document.title = 'Taverna interaction';
	}

	window.onload = function() {
	// log("Interaction loaded");
	registerCalls();
	};

	</script>

	<div id="presentationDiv">
	<iframe id="presentationFrame" name="presentationFrame" src="about:blank">
	</iframe>
	</div>
	<div id="acknowledgment">
	<p>The interaction service was developed in the <a href="http://www.biovel.eu" target="_blank">BioVeL project</a></p>
	</div>
	</body>
	</html>