Merge branch 'core' into astronomy
Conflicts:
src/main/install4j/taverna-commandline.install4j
diff --git a/LICENCE.txt b/LICENCE.txt
new file mode 100644
index 0000000..818433e
--- /dev/null
+++ b/LICENCE.txt
@@ -0,0 +1,674 @@
+ GNU GENERAL PUBLIC LICENSE
+ Version 3, 29 June 2007
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diff --git a/LICENSE.txt b/LICENSE.txt
deleted file mode 100644
index 53afb04..0000000
--- a/LICENSE.txt
+++ /dev/null
@@ -1,504 +0,0 @@
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diff --git a/README.md b/README.md
index 2438675..2d0acca 100644
--- a/README.md
+++ b/README.md
@@ -133,9 +133,14 @@
Licence
=======
-Taverna is licenced under the GNU Lesser General Public Licence. (LGPL) 2.1.
-See the file LICENSE.txt or http://www.gnu.org/licenses/lgpl-2.1.html for
-details.
+This AstroTaverna edition is licensed under the GPL General Public License (GPL) 3.0.
+See the file [LICENCE.txt](LICENCE.txt) or https://www.gnu.org/licenses/gpl-3.0.html for
+details.
+
+(The reason the AstroTaverna edition is GPL 3, while Taverna in general is
+licensed under the more permissive LGPL 2.1, is that AstroTaverna
+bundles [Aladin](http://aladin.u-strasbg.fr/) which is licensed under
+GPL 3).
If the source code was not included in this download, you can download it from
http://www.taverna.org.uk/download/workbench/2-5/#download-source or
diff --git a/pom.xml b/pom.xml
index 80c52f6..d64b012 100644
--- a/pom.xml
+++ b/pom.xml
@@ -11,12 +11,15 @@
<!-- ##### For each branch, change ${edition} below -->
<artifactId>taverna-commandline-${edition}</artifactId>
- <name>Taverna Command Line Tool Core</name>
+ <name>Taverna Command Line Tool Astronomy</name>
<properties>
- <edition>core</edition>
+ <edition>astronomy</edition>
<!-- ######## -->
<raven.app.name>taverna-cmd-${edition}-${project.version}-${buildNumber}</raven.app.name>
+ <astrotaverna.version>1.20</astrotaverna.version>
+ <helio.version>0.2.1</helio.version>
+ <vamdc.version>1.0</vamdc.version>
</properties>
<dependencies>
@@ -85,6 +88,27 @@
<scope>test</scope>
</dependency>
-->
+
+
+ <!-- astrotaverna activities -->
+ <dependency>
+ <groupId>org.purl.wf4ever.astrotaverna</groupId>
+ <artifactId>stilts-activity</artifactId>
+ <version>${astrotaverna.version}</version>
+ <scope>test</scope>
+ </dependency>
+ <dependency>
+ <groupId>org.purl.wf4ever.astrotaverna</groupId>
+ <artifactId>PDL-activity</artifactId>
+ <version>${astrotaverna.version}</version>
+ <scope>test</scope>
+ </dependency>
+ <dependency>
+ <groupId>org.purl.wf4ever.astrotaverna</groupId>
+ <artifactId>Image-activity</artifactId>
+ <version>${astrotaverna.version}</version>
+ <scope>test</scope>
+ </dependency>
<dependency>
<groupId>net.sf.taverna.t2.taverna-commandline</groupId>
@@ -93,6 +117,22 @@
<scope>test</scope>
</dependency>
+ <!-- helio -->
+ <dependency>
+ <groupId>org.helio.taverna</groupId>
+ <artifactId>helio-activity</artifactId>
+ <version>${helio.version}</version>
+ <scope>test</scope>
+ </dependency>
+
+ <!-- vamdc -->
+ <dependency>
+ <groupId>org.vamdc.taverna</groupId>
+ <artifactId>vamdc-activity</artifactId>
+ <version>${vamdc.version}</version>
+ <scope>test</scope>
+ </dependency>
+
</dependencies>
<dependencyManagement>
<dependencies>
@@ -187,8 +227,43 @@
<!-- generated with workbench-distro/src/main/python/generateArtifactItems.py -->
+ <artifactItem>
+ <groupId>org.astrogrid</groupId>
+ <artifactId>astrogrid-utils</artifactId>
+ <version>2007.2ut</version>
+ <type>pom</type>
+ <outputDirectory>${project.build.directory}/repository/org/astrogrid/astrogrid-utils/2007.2ut</outputDirectory>
+ </artifactItem>
+ <artifactItem>
+ <groupId>org.astrogrid</groupId>
+ <artifactId>astrogrid-config</artifactId>
+ <version>2007.2cfg</version>
+ <type>jar</type>
+ <outputDirectory>${project.build.directory}/repository/org/astrogrid/astrogrid-config/2007.2cfg</outputDirectory>
+ </artifactItem>
+ <artifactItem>
+ <groupId>org.astrogrid</groupId>
+ <artifactId>astrogrid-xml</artifactId>
+ <version>2007.2xml</version>
+ <type>jar</type>
+ <outputDirectory>${project.build.directory}/repository/org/astrogrid/astrogrid-xml/2007.2xml</outputDirectory>
+ </artifactItem>
<artifactItem>
+ <groupId>commons-collections</groupId>
+ <artifactId>commons-collections</artifactId>
+ <version>3.2.1</version>
+ <type>jar</type>
+ <outputDirectory>${project.build.directory}/repository/commons-collections/commons-collections/3.2.1</outputDirectory>
+ </artifactItem>
+ <artifactItem>
+ <groupId>commons-collections</groupId>
+ <artifactId>commons-collections</artifactId>
+ <version>3.2.1</version>
+ <type>pom</type>
+ <outputDirectory>${project.build.directory}/repository/commons-collections/commons-collections/3.2.1</outputDirectory>
+ </artifactItem>
+ <artifactItem>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-core</artifactId>
<version>2.3.1</version>
@@ -252,6 +327,78 @@
<outputDirectory>${project.build.directory}/repository/com/fasterxml/oss-parent/12</outputDirectory>
</artifactItem>
<artifactItem>
+ <groupId>com.sun.xml.bind</groupId>
+ <artifactId>jaxb-impl</artifactId>
+ <version>2.1.8</version>
+ <type>jar</type>
+ <outputDirectory>${project.build.directory}/repository/com/sun/xml/bind/jaxb-impl/2.1.8</outputDirectory>
+ </artifactItem>
+ <artifactItem>
+ <groupId>com.sun.xml.bind</groupId>
+ <artifactId>jaxb-impl</artifactId>
+ <version>2.1.8</version>
+ <type>pom</type>
+ <outputDirectory>${project.build.directory}/repository/com/sun/xml/bind/jaxb-impl/2.1.8</outputDirectory>
+ </artifactItem>
+ <!--
+ <artifactItem>
+ <groupId>com.sun.jdmk</groupId>
+ <artifactId>jmxtools</artifactId>
+ <version>1.2.1</version>
+ <type>jar</type>
+ <outputDirectory>${project.build.directory}/repository/com/sun/jdmk/jmxtools/1.2.1</outputDirectory>
+ </artifactItem>
+ <artifactItem>
+ <groupId>com.sun.jdmk</groupId>
+ <artifactId>jmxtools</artifactId>
+ <version>1.2.1</version>
+ <type>pom</type>
+ <outputDirectory>${project.build.directory}/repository/com/sun/jdmk/jmxtools/1.2.1</outputDirectory>
+ </artifactItem>
+ <artifactItem>
+ <groupId>com.sun.jmx</groupId>
+ <artifactId>jmxri</artifactId>
+ <version>1.2.1</version>
+ <type>pom</type>
+ <outputDirectory>${project.build.directory}/repository/com/sun/jmx/jmxri/1.2.1</outputDirectory>
+ </artifactItem>
+ <artifactItem>
+ <groupId>com.sun.jmx</groupId>
+ <artifactId>jmxri</artifactId>
+ <version>1.2.1</version>
+ <type>jar</type>
+ <outputDirectory>${project.build.directory}/repository/com/sun/jmx/jmxri/1.2.1</outputDirectory>
+ </artifactItem>
+ -->
+ <artifactItem>
+ <groupId>xerces</groupId>
+ <artifactId>xerces</artifactId>
+ <version>1.2.3</version>
+ <type>pom</type>
+ <outputDirectory>${project.build.directory}/repository/xerces/xerces/1.2.3</outputDirectory>
+ </artifactItem>
+ <artifactItem>
+ <groupId>xerces</groupId>
+ <artifactId>xerces</artifactId>
+ <version>1.2.3</version>
+ <type>jar</type>
+ <outputDirectory>${project.build.directory}/repository/xerces/xerces/1.2.3</outputDirectory>
+ </artifactItem>
+ <artifactItem>
+ <groupId>xerces</groupId>
+ <artifactId>xercesImpl</artifactId>
+ <version>2.8.0</version>
+ <type>jar</type>
+ <outputDirectory>${project.build.directory}/repository/xerces/xercesImpl/2.8.0</outputDirectory>
+ </artifactItem>
+ <artifactItem>
+ <groupId>xerces</groupId>
+ <artifactId>xercesImpl</artifactId>
+ <version>2.8.0</version>
+ <type>pom</type>
+ <outputDirectory>${project.build.directory}/repository/xerces/xercesImpl/2.8.0</outputDirectory>
+ </artifactItem>
+ <artifactItem>
<groupId>xerces</groupId>
<artifactId>xmlParserAPIs</artifactId>
<version>2.2.1</version>
@@ -266,6 +413,90 @@
<outputDirectory>${project.build.directory}/repository/xerces/xmlParserAPIs/2.2.1</outputDirectory>
</artifactItem>
<artifactItem>
+ <groupId>commons-jxpath</groupId>
+ <artifactId>commons-jxpath</artifactId>
+ <version>1.1</version>
+ <type>pom</type>
+ <outputDirectory>${project.build.directory}/repository/commons-jxpath/commons-jxpath/1.1</outputDirectory>
+ </artifactItem>
+ <artifactItem>
+ <groupId>commons-jxpath</groupId>
+ <artifactId>commons-jxpath</artifactId>
+ <version>1.1</version>
+ <type>jar</type>
+ <outputDirectory>${project.build.directory}/repository/commons-jxpath/commons-jxpath/1.1</outputDirectory>
+ </artifactItem>
+ <artifactItem>
+ <groupId>commons-discovery</groupId>
+ <artifactId>commons-discovery</artifactId>
+ <version>20030211.213356</version>
+ <type>pom</type>
+ <outputDirectory>${project.build.directory}/repository/commons-discovery/commons-discovery/20030211.213356</outputDirectory>
+ </artifactItem>
+ <artifactItem>
+ <groupId>commons-discovery</groupId>
+ <artifactId>commons-discovery</artifactId>
+ <version>0.2</version>
+ <type>jar</type>
+ <outputDirectory>${project.build.directory}/repository/commons-discovery/commons-discovery/0.2</outputDirectory>
+ </artifactItem>
+ <artifactItem>
+ <groupId>commons-discovery</groupId>
+ <artifactId>commons-discovery</artifactId>
+ <version>0.2</version>
+ <type>pom</type>
+ <outputDirectory>${project.build.directory}/repository/commons-discovery/commons-discovery/0.2</outputDirectory>
+ </artifactItem>
+ <artifactItem>
+ <groupId>uk.ac.starlink</groupId>
+ <artifactId>topcat-lite</artifactId>
+ <version>3.8</version>
+ <type>pom</type>
+ <outputDirectory>${project.build.directory}/repository/uk/ac/starlink/topcat-lite/3.8</outputDirectory>
+ </artifactItem>
+ <artifactItem>
+ <groupId>log4j</groupId>
+ <artifactId>log4j</artifactId>
+ <version>1.2.15</version>
+ <type>pom</type>
+ <outputDirectory>${project.build.directory}/repository/log4j/log4j/1.2.15</outputDirectory>
+ </artifactItem>
+ <artifactItem>
+ <groupId>log4j</groupId>
+ <artifactId>log4j</artifactId>
+ <version>1.2.15</version>
+ <type>jar</type>
+ <outputDirectory>${project.build.directory}/repository/log4j/log4j/1.2.15</outputDirectory>
+ </artifactItem>
+ <artifactItem>
+ <groupId>log4j</groupId>
+ <artifactId>log4j</artifactId>
+ <version>1.2.8</version>
+ <type>pom</type>
+ <outputDirectory>${project.build.directory}/repository/log4j/log4j/1.2.8</outputDirectory>
+ </artifactItem>
+ <artifactItem>
+ <groupId>log4j</groupId>
+ <artifactId>log4j</artifactId>
+ <version>1.2.8</version>
+ <type>jar</type>
+ <outputDirectory>${project.build.directory}/repository/log4j/log4j/1.2.8</outputDirectory>
+ </artifactItem>
+ <artifactItem>
+ <groupId>ant</groupId>
+ <artifactId>ant-optional</artifactId>
+ <version>1.5.1</version>
+ <type>pom</type>
+ <outputDirectory>${project.build.directory}/repository/ant/ant-optional/1.5.1</outputDirectory>
+ </artifactItem>
+ <artifactItem>
+ <groupId>ant</groupId>
+ <artifactId>ant-optional</artifactId>
+ <version>1.5.1</version>
+ <type>jar</type>
+ <outputDirectory>${project.build.directory}/repository/ant/ant-optional/1.5.1</outputDirectory>
+ </artifactItem>
+ <artifactItem>
<groupId>commons-codec</groupId>
<artifactId>commons-codec</artifactId>
<version>1.3</version>
@@ -280,6 +511,48 @@
<outputDirectory>${project.build.directory}/repository/commons-codec/commons-codec/1.3</outputDirectory>
</artifactItem>
<artifactItem>
+ <groupId>commons-httpclient</groupId>
+ <artifactId>commons-httpclient</artifactId>
+ <version>3.0.1</version>
+ <type>jar</type>
+ <outputDirectory>${project.build.directory}/repository/commons-httpclient/commons-httpclient/3.0.1</outputDirectory>
+ </artifactItem>
+ <artifactItem>
+ <groupId>commons-httpclient</groupId>
+ <artifactId>commons-httpclient</artifactId>
+ <version>3.0.1</version>
+ <type>pom</type>
+ <outputDirectory>${project.build.directory}/repository/commons-httpclient/commons-httpclient/3.0.1</outputDirectory>
+ </artifactItem>
+ <artifactItem>
+ <groupId>commons-transaction</groupId>
+ <artifactId>commons-transaction</artifactId>
+ <version>1.1</version>
+ <type>pom</type>
+ <outputDirectory>${project.build.directory}/repository/commons-transaction/commons-transaction/1.1</outputDirectory>
+ </artifactItem>
+ <artifactItem>
+ <groupId>jdom</groupId>
+ <artifactId>jdom</artifactId>
+ <version>b8</version>
+ <type>pom</type>
+ <outputDirectory>${project.build.directory}/repository/jdom/jdom/b8</outputDirectory>
+ </artifactItem>
+ <artifactItem>
+ <groupId>jdom</groupId>
+ <artifactId>jdom</artifactId>
+ <version>b8</version>
+ <type>jar</type>
+ <outputDirectory>${project.build.directory}/repository/jdom/jdom/b8</outputDirectory>
+ </artifactItem>
+ <artifactItem>
+ <groupId>org.apache.commons</groupId>
+ <artifactId>commons-parent</artifactId>
+ <version>9</version>
+ <type>pom</type>
+ <outputDirectory>${project.build.directory}/repository/org/apache/commons/commons-parent/9</outputDirectory>
+ </artifactItem>
+ <artifactItem>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-log4j12</artifactId>
<version>1.6.4</version>
@@ -293,6 +566,63 @@
<type>pom</type>
<outputDirectory>${project.build.directory}/repository/org/slf4j/slf4j-log4j12/1.6.4</outputDirectory>
</artifactItem>
+ <artifactItem>
+ <groupId>org.astrogrid</groupId>
+ <artifactId>astrogrid-registry-client-lite</artifactId>
+ <version>2009.1b</version>
+ <type>pom</type>
+ <outputDirectory>${project.build.directory}/repository/org/astrogrid/astrogrid-registry-client-lite/2009.1b</outputDirectory>
+ </artifactItem>
+ <artifactItem>
+ <groupId>org.astrogrid</groupId>
+ <artifactId>astrogrid-config</artifactId>
+ <version>2007.2cfg</version>
+ <type>pom</type>
+ <outputDirectory>${project.build.directory}/repository/org/astrogrid/astrogrid-config/2007.2cfg</outputDirectory>
+ </artifactItem>
+ <artifactItem>
+ <groupId>org.astrogrid</groupId>
+ <artifactId>astrogrid-xml</artifactId>
+ <version>2007.2xml</version>
+ <type>pom</type>
+ <outputDirectory>${project.build.directory}/repository/org/astrogrid/astrogrid-xml/2007.2xml</outputDirectory>
+ </artifactItem>
+ <artifactItem>
+ <groupId>javax.jms</groupId>
+ <artifactId>jms</artifactId>
+ <version>1.1</version>
+ <type>jar</type>
+ <outputDirectory>${project.build.directory}/repository/javax/jms/jms/1.1</outputDirectory>
+ </artifactItem>
+ <artifactItem>
+ <groupId>javax.jms</groupId>
+ <artifactId>jms</artifactId>
+ <version>1.1</version>
+ <type>pom</type>
+ <outputDirectory>${project.build.directory}/repository/javax/jms/jms/1.1</outputDirectory>
+ </artifactItem>
+
+ <artifactItem>
+ <groupId>org.slf4j</groupId>
+ <artifactId>slf4j-parent</artifactId>
+ <version>1.6.1</version>
+ <type>pom</type>
+ <outputDirectory>${project.build.directory}/repository/org/slf4j/slf4j-parent/1.6.1</outputDirectory>
+ </artifactItem>
+ <artifactItem>
+ <groupId>org.slf4j</groupId>
+ <artifactId>slf4j-api</artifactId>
+ <version>1.6.1</version>
+ <type>jar</type>
+ <outputDirectory>${project.build.directory}/repository/org/slf4j/slf4j-api/1.6.1</outputDirectory>
+ </artifactItem>
+ <artifactItem>
+ <groupId>org.slf4j</groupId>
+ <artifactId>slf4j-api</artifactId>
+ <version>1.6.1</version>
+ <type>pom</type>
+ <outputDirectory>${project.build.directory}/repository/org/slf4j/slf4j-api/1.6.1</outputDirectory>
+ </artifactItem>
<artifactItem>
<groupId>xom</groupId>
@@ -1770,6 +2100,33 @@
</releases>
<snapshots />
</repository>
+ <repository>
+ <id>astrotaverna</id>
+ <name>AstroTaverna repository</name>
+ <url>http://wf4ever.github.com/astrotaverna/</url>
+ <releases />
+ <snapshots>
+ <enabled>false</enabled>
+ </snapshots>
+ </repository>
+ <repository>
+ <id>helio</id>
+ <name>Helio Taverna repository</name>
+ <url>http://msslkz.mssl.ucl.ac.uk/helio_taverna/helio_repository/</url>
+ <releases />
+ <snapshots>
+ <enabled>false</enabled>
+ </snapshots>
+ </repository>
+ <repository>
+ <id>vamdc</id>
+ <name>VAMDC Taverna repository</name>
+ <url>http://vamdc.mssl.ucl.ac.uk/vamdc_repository/</url>
+ <releases />
+ <snapshots>
+ <enabled>false</enabled>
+ </snapshots>
+ </repository>
<repository>
<id>aduna-opensource.releases</id>
<name>Aduna Open Source - Maven releases</name>
diff --git a/src/main/assembly/resources-component.xml b/src/main/assembly/resources-component.xml
index 917d24e..9c8670f 100644
--- a/src/main/assembly/resources-component.xml
+++ b/src/main/assembly/resources-component.xml
@@ -13,6 +13,8 @@
<excludes>
<exclude>bin/</exclude>
<exclude>META-INF/</exclude>
+ <exclude>LICENSE.txt</exclude>
+ <exclude>LICENCE.txt</exclude>
</excludes>
</unpackOptions>
<!-- 0755 for all, due to
diff --git a/src/main/install4j/taverna-commandline.install4j b/src/main/install4j/taverna-commandline.install4j
index 60a7ad3..febb117 100644
--- a/src/main/install4j/taverna-commandline.install4j
+++ b/src/main/install4j/taverna-commandline.install4j
@@ -1,7 +1,7 @@
<?xml version="1.0" encoding="UTF-8"?>
<install4j version="5.1.11" transformSequenceNumber="4">
<directoryPresets config="../../../target/taverna-workbench-dist/taverna.sh" />
- <application name="${compiler:product-name}" distributionSourceDir="" applicationId="6321-5227-3164-0432" mediaDir="../../../target/media" mediaFilePattern="${compiler:sys.shortName}-${compiler:sys.version}-${compiler:sys.platform}" compression="6" lzmaCompression="false" pack200Compression="false" excludeSignedFromPacking="true" commonExternalFiles="false" createMd5Sums="true" shrinkRuntime="false" shortName="taverna-commandline-${compiler:edition}" publisher="myGrid" publisherWeb="http://www.taverna.org.uk/" version="2.5-SNAPSHOT" allPathsRelative="true" backupOnSave="false" autoSave="true" convertDotsToUnderscores="false" macSignature="????" installerName="" javaMinVersion="1.7" javaMaxVersion="" allowBetaVM="false" jdkMode="runtimeJre" jdkName="">
+ <application name="${compiler:product-name}" distributionSourceDir="" applicationId="2111-8232-4743-5748" mediaDir="../../../target/media" mediaFilePattern="${compiler:sys.shortName}-${compiler:sys.version}-${compiler:sys.platform}" compression="6" lzmaCompression="false" pack200Compression="false" excludeSignedFromPacking="true" commonExternalFiles="false" createMd5Sums="true" shrinkRuntime="false" shortName="taverna-commandline-${compiler:edition}" publisher="myGrid" publisherWeb="http://www.taverna.org.uk/" version="2.5-SNAPSHOT" allPathsRelative="true" backupOnSave="false" autoSave="true" convertDotsToUnderscores="false" macSignature="????" installerName="" javaMinVersion="1.7" javaMaxVersion="" allowBetaVM="false" jdkMode="runtimeJre" jdkName="">
<languages skipLanguageSelection="false" languageSelectionInPrincipalLanguage="false">
<principalLanguage id="en" customLocalizationFile="" />
<additionalLanguages />
diff --git a/src/main/resources/LICENCE.txt b/src/main/resources/LICENCE.txt
new file mode 100644
index 0000000..818433e
--- /dev/null
+++ b/src/main/resources/LICENCE.txt
@@ -0,0 +1,674 @@
+ GNU GENERAL PUBLIC LICENSE
+ Version 3, 29 June 2007
+
+ Copyright (C) 2007 Free Software Foundation, Inc. <http://fsf.org/>
+ Everyone is permitted to copy and distribute verbatim copies
+ of this license document, but changing it is not allowed.
+
+ Preamble
+
+ The GNU General Public License is a free, copyleft license for
+software and other kinds of works.
+
+ The licenses for most software and other practical works are designed
+to take away your freedom to share and change the works. By contrast,
+the GNU General Public License is intended to guarantee your freedom to
+share and change all versions of a program--to make sure it remains free
+software for all its users. We, the Free Software Foundation, use the
+GNU General Public License for most of our software; it applies also to
+any other work released this way by its authors. You can apply it to
+your programs, too.
+
+ When we speak of free software, we are referring to freedom, not
+price. Our General Public Licenses are designed to make sure that you
+have the freedom to distribute copies of free software (and charge for
+them if you wish), that you receive source code or can get it if you
+want it, that you can change the software or use pieces of it in new
+free programs, and that you know you can do these things.
+
+ To protect your rights, we need to prevent others from denying you
+these rights or asking you to surrender the rights. Therefore, you have
+certain responsibilities if you distribute copies of the software, or if
+you modify it: responsibilities to respect the freedom of others.
+
+ For example, if you distribute copies of such a program, whether
+gratis or for a fee, you must pass on to the recipients the same
+freedoms that you received. You must make sure that they, too, receive
+or can get the source code. And you must show them these terms so they
+know their rights.
+
+ Developers that use the GNU GPL protect your rights with two steps:
+(1) assert copyright on the software, and (2) offer you this License
+giving you legal permission to copy, distribute and/or modify it.
+
+ For the developers' and authors' protection, the GPL clearly explains
+that there is no warranty for this free software. For both users' and
+authors' sake, the GPL requires that modified versions be marked as
+changed, so that their problems will not be attributed erroneously to
+authors of previous versions.
+
+ Some devices are designed to deny users access to install or run
+modified versions of the software inside them, although the manufacturer
+can do so. This is fundamentally incompatible with the aim of
+protecting users' freedom to change the software. The systematic
+pattern of such abuse occurs in the area of products for individuals to
+use, which is precisely where it is most unacceptable. Therefore, we
+have designed this version of the GPL to prohibit the practice for those
+products. If such problems arise substantially in other domains, we
+stand ready to extend this provision to those domains in future versions
+of the GPL, as needed to protect the freedom of users.
+
+ Finally, every program is threatened constantly by software patents.
+States should not allow patents to restrict development and use of
+software on general-purpose computers, but in those that do, we wish to
+avoid the special danger that patents applied to a free program could
+make it effectively proprietary. To prevent this, the GPL assures that
+patents cannot be used to render the program non-free.
+
+ The precise terms and conditions for copying, distribution and
+modification follow.
+
+ TERMS AND CONDITIONS
+
+ 0. Definitions.
+
+ "This License" refers to version 3 of the GNU General Public License.
+
+ "Copyright" also means copyright-like laws that apply to other kinds of
+works, such as semiconductor masks.
+
+ "The Program" refers to any copyrightable work licensed under this
+License. Each licensee is addressed as "you". "Licensees" and
+"recipients" may be individuals or organizations.
+
+ To "modify" a work means to copy from or adapt all or part of the work
+in a fashion requiring copyright permission, other than the making of an
+exact copy. The resulting work is called a "modified version" of the
+earlier work or a work "based on" the earlier work.
+
+ A "covered work" means either the unmodified Program or a work based
+on the Program.
+
+ To "propagate" a work means to do anything with it that, without
+permission, would make you directly or secondarily liable for
+infringement under applicable copyright law, except executing it on a
+computer or modifying a private copy. Propagation includes copying,
+distribution (with or without modification), making available to the
+public, and in some countries other activities as well.
+
+ To "convey" a work means any kind of propagation that enables other
+parties to make or receive copies. Mere interaction with a user through
+a computer network, with no transfer of a copy, is not conveying.
+
+ An interactive user interface displays "Appropriate Legal Notices"
+to the extent that it includes a convenient and prominently visible
+feature that (1) displays an appropriate copyright notice, and (2)
+tells the user that there is no warranty for the work (except to the
+extent that warranties are provided), that licensees may convey the
+work under this License, and how to view a copy of this License. If
+the interface presents a list of user commands or options, such as a
+menu, a prominent item in the list meets this criterion.
+
+ 1. Source Code.
+
+ The "source code" for a work means the preferred form of the work
+for making modifications to it. "Object code" means any non-source
+form of a work.
+
+ A "Standard Interface" means an interface that either is an official
+standard defined by a recognized standards body, or, in the case of
+interfaces specified for a particular programming language, one that
+is widely used among developers working in that language.
+
+ The "System Libraries" of an executable work include anything, other
+than the work as a whole, that (a) is included in the normal form of
+packaging a Major Component, but which is not part of that Major
+Component, and (b) serves only to enable use of the work with that
+Major Component, or to implement a Standard Interface for which an
+implementation is available to the public in source code form. A
+"Major Component", in this context, means a major essential component
+(kernel, window system, and so on) of the specific operating system
+(if any) on which the executable work runs, or a compiler used to
+produce the work, or an object code interpreter used to run it.
+
+ The "Corresponding Source" for a work in object code form means all
+the source code needed to generate, install, and (for an executable
+work) run the object code and to modify the work, including scripts to
+control those activities. However, it does not include the work's
+System Libraries, or general-purpose tools or generally available free
+programs which are used unmodified in performing those activities but
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+same work.
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+or that patent license was granted, prior to 28 March 2007.
+
+ Nothing in this License shall be construed as excluding or limiting
+any implied license or other defenses to infringement that may
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+
+ 12. No Surrender of Others' Freedom.
+
+ If conditions are imposed on you (whether by court order, agreement or
+otherwise) that contradict the conditions of this License, they do not
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+the Program, the only way you could satisfy both those terms and this
+License would be to refrain entirely from conveying the Program.
+
+ 13. Use with the GNU Affero General Public License.
+
+ Notwithstanding any other provision of this License, you have
+permission to link or combine any covered work with a work licensed
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+
+ 14. Revised Versions of this License.
+
+ The Free Software Foundation may publish revised and/or new versions of
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+be similar in spirit to the present version, but may differ in detail to
+address new problems or concerns.
+
+ Each version is given a distinguishing version number. If the
+Program specifies that a certain numbered version of the GNU General
+Public License "or any later version" applies to it, you have the
+option of following the terms and conditions either of that numbered
+version or of any later version published by the Free Software
+Foundation. If the Program does not specify a version number of the
+GNU General Public License, you may choose any version ever published
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+
+ If the Program specifies that a proxy can decide which future
+versions of the GNU General Public License can be used, that proxy's
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+
+ Later license versions may give you additional or different
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+
+ THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY
+APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT
+HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY
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+THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
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+IS WITH YOU. SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF
+ALL NECESSARY SERVICING, REPAIR OR CORRECTION.
+
+ 16. Limitation of Liability.
+
+ IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
+WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MODIFIES AND/OR CONVEYS
+THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY
+GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE
+USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF
+DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD
+PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS),
+EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF
+SUCH DAMAGES.
+
+ 17. Interpretation of Sections 15 and 16.
+
+ If the disclaimer of warranty and limitation of liability provided
+above cannot be given local legal effect according to their terms,
+reviewing courts shall apply local law that most closely approximates
+an absolute waiver of all civil liability in connection with the
+Program, unless a warranty or assumption of liability accompanies a
+copy of the Program in return for a fee.
+
+ END OF TERMS AND CONDITIONS
+
+ How to Apply These Terms to Your New Programs
+
+ If you develop a new program, and you want it to be of the greatest
+possible use to the public, the best way to achieve this is to make it
+free software which everyone can redistribute and change under these terms.
+
+ To do so, attach the following notices to the program. It is safest
+to attach them to the start of each source file to most effectively
+state the exclusion of warranty; and each file should have at least
+the "copyright" line and a pointer to where the full notice is found.
+
+ <one line to give the program's name and a brief idea of what it does.>
+ Copyright (C) <year> <name of author>
+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+Also add information on how to contact you by electronic and paper mail.
+
+ If the program does terminal interaction, make it output a short
+notice like this when it starts in an interactive mode:
+
+ <program> Copyright (C) <year> <name of author>
+ This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
+ This is free software, and you are welcome to redistribute it
+ under certain conditions; type `show c' for details.
+
+The hypothetical commands `show w' and `show c' should show the appropriate
+parts of the General Public License. Of course, your program's commands
+might be different; for a GUI interface, you would use an "about box".
+
+ You should also get your employer (if you work as a programmer) or school,
+if any, to sign a "copyright disclaimer" for the program, if necessary.
+For more information on this, and how to apply and follow the GNU GPL, see
+<http://www.gnu.org/licenses/>.
+
+ The GNU General Public License does not permit incorporating your program
+into proprietary programs. If your program is a subroutine library, you
+may consider it more useful to permit linking proprietary applications with
+the library. If this is what you want to do, use the GNU Lesser General
+Public License instead of this License. But first, please read
+<http://www.gnu.org/philosophy/why-not-lgpl.html>.
diff --git a/src/main/resources/plugins/plugins.xml b/src/main/resources/plugins/plugins.xml
index 1d85405..b84eb7f 100644
--- a/src/main/resources/plugins/plugins.xml
+++ b/src/main/resources/plugins/plugins.xml
@@ -224,7 +224,84 @@
</compatibility>
</plugin>
-->
+
+ <plugin>
+ <provider>org.purl.wf4ever</provider>
+ <identifier>org.purl.wf4ever.astrotaverna.commandline</identifier>
+ <version>${astrotaverna.version}</version>
+ <name>Astro Taverna activities</name>
+ <description/>
+ <enabled>true</enabled>
+ <repositories>
+ <repository>http://www.mygrid.org.uk/maven/repository</repository>
+ <repository>http://wf4ever.github.com/astrotaverna</repository>
+ <repository>http://www.mygrid.org.uk/maven/snapshot-repository</repository>
+ <repository>http://uk.maven.org/maven2</repository>
+ <!--
+ <repository>http://repo.maven.apache.org/maven2</repository>
+ <repository>http://download.java.net/maven/2</repository>
+ <repository>http://nexus.codehaus.org/snapshots</repository>
+ <repository>https://jaxb-visitor.googlecode.com/svn/maven-repository</repository>
+ <repository>https://oss.sonatype.org/content/repositories/snapshots</repository>
+ -->
+ </repositories>
+ <profile>
+ <dependency>
+ <groupId>org.purl.wf4ever.astrotaverna</groupId>
+ <artifactId>stilts-activity</artifactId>
+ <version>${astrotaverna.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.purl.wf4ever.astrotaverna</groupId>
+ <artifactId>PDL-activity</artifactId>
+ <version>${astrotaverna.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.purl.wf4ever.astrotaverna</groupId>
+ <artifactId>Image-activity</artifactId>
+ <version>${astrotaverna.version}</version>
+ </dependency>
+ </profile>
+ <compatibility>
+ <application>
+ <version>${project.version}</version>
+ </application>
+ </compatibility>
+ </plugin>
+ <plugin>
+ <provider>helio.eu</provider>
+ <identifier>uk.org.mygrid.taverna.plugins.helio-taverna-suite.commandline</identifier>
+ <version>${helio.version}</version>
+
+ <!-- Does not match the workbench version, this -->
+ <!-- is the plugin version -->
+ <name>Helio Taverna activity</name>
+ <description>Helio Taverna activity</description>
+ <enabled>true</enabled>
+ <repositories>
+ <!-- myGrid repositories and mirrors -->
+ <repository>http://msslkz.mssl.ucl.ac.uk/helio_taverna/helio_repository/</repository>
+ <repository>http://www.astrogrid.org/maven2/</repository>
+ <repository>http://ag03.ast.cam.ac.uk/nexus/content/groups/public/</repository>
+ <repository>http://www.astrogrid.org/maven/</repository>
+ <repository>http://www.mygrid.org.uk/maven/repository/</repository>
+ </repositories>
+
+ <profile>
+ <artifact groupId="org.helio.taverna" artifactId="helio-activity" version="${helio.version}" />
+ </profile>
+
+ <compatibility>
+ <application>
+ <version>${project.version}</version>
+ </application>
+ </compatibility>
+ </plugin>
+
+
+
+
<plugin>
<provider>taverna.sf.net</provider>
<identifier>net.sf.taverna.t2.commandline</identifier>
@@ -255,4 +332,35 @@
</application>
</compatibility>
</plugin>
+
+ <plugin>
+ <provider>vamdc.org</provider>
+ <identifier>uk.org.mygrid.taverna.plugins.vamdc-taverna-suite</identifier>
+ <version>${vamdc.version}</version>
+
+ <!-- Does not match the workbench version, this -->
+ <!-- is the plugin version -->
+ <name>VamDC Taverna Plugin</name>
+ <description>VAMDC Taverna Plugin</description>
+ <enabled>true</enabled>
+ <repositories>
+ <!-- myGrid repositories and mirrors -->
+ <repository>http://vamdc.mssl.ucl.ac.uk/vamdc_repository/</repository>
+ <repository>http://www.astrogrid.org/maven2/</repository>
+ <repository>http://ag03.ast.cam.ac.uk/nexus/content/groups/public/</repository>
+ <repository>http://www.astrogrid.org/maven/</repository>
+ <repository>http://bioinf.ncl.ac.uk/mirror/maven/repository/</repository>
+ </repositories>
+
+ <profile>
+ <artifact groupId="org.vamdc.taverna" artifactId="vamdc-activity" version="${vamdc.version}" />
+ </profile>
+
+ <compatibility>
+ <application>
+ <version>2.5.0</version>
+ </application>
+ </compatibility>
+ </plugin>
+
</plugins:plugins>
