updated for 2.3.0

git-svn-id: https://taverna.googlecode.com/svn/taverna/products/net.sf.taverna.t2.taverna-commandline/branches/taverna-commandline-2.3.0@13610 bf327186-88b3-11dd-a302-d386e5130c1c
diff --git a/pom.xml b/pom.xml
index f4d1c23..bce7b89 100644
--- a/pom.xml
+++ b/pom.xml
@@ -2,29 +2,31 @@
 <project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
 	<modelVersion>4.0.0</modelVersion>	
 	<parent>
-		<artifactId>parent</artifactId>
+		<artifactId>taverna-parent</artifactId>
 		<groupId>net.sf.taverna</groupId>
-		<version>0.1.2009-02-12</version>
+		<version>2.3.0</version>
 	</parent>
 	<groupId>net.sf.taverna.t2</groupId>
 	<artifactId>taverna-commandline</artifactId>
-	<version>2.3-SNAPSHOT</version>
+	<version>2.3.0</version>
 	<name>Taverna command line utillity</name>
 	<properties>
-		<t2.taverna.workbench.version>2.2.0</t2.taverna.workbench.version>
-		<t2.infrastructure.version>2.2</t2.infrastructure.version>
-		<t2.core.version>1.2</t2.core.version>
-		<t2.activities.version>1.2</t2.activities.version>
-		<t2.compatibility.translators.version>1.2</t2.compatibility.translators.version>
-		<t2.ui.api.version>1.2</t2.ui.api.version>
-		<t2.ui.impl.version>1.2</t2.ui.impl.version>
-		<t2.ui.components.version>1.2</t2.ui.components.version>
-		<t2.ui.activities.version>1.2</t2.ui.activities.version>
-		<t2.ui.exts.version>1.2</t2.ui.exts.version>
-		<t2.core.provenance.derby.version>1.2</t2.core.provenance.derby.version>
-		<t2.core.provenance.mysql.version>1.2</t2.core.provenance.mysql.version>
-		<t2.taverna-commandline.version>1.2</t2.taverna-commandline.version>
+<!--
+		<t2.taverna.workbench.version>2.3.0</t2.taverna.workbench.version>
+		<t2.infrastructure.version>2.3</t2.infrastructure.version>
+		<t2.core.version>1.3</t2.core.version>
+		<t2.activities.version>1.3</t2.activities.version>
+		<t2.compatibility.translators.version>1.3</t2.compatibility.translators.version>
+		<t2.ui.api.version>1.3</t2.ui.api.version>
+		<t2.ui.impl.version>1.3</t2.ui.impl.version>
+		<t2.ui.components.version>1.3</t2.ui.components.version>
+		<t2.ui.activities.version>1.3</t2.ui.activities.version>
+		<t2.ui.exts.version>1.3</t2.ui.exts.version>
+		<t2.core.provenance.derby.version>1.3</t2.core.provenance.derby.version>
+		<t2.core.provenance.mysql.version>1.3</t2.core.provenance.mysql.version>
+		<t2.taverna-commandline.version>1.3</t2.taverna-commandline.version>
 		<taverna.version>1.7.2.2</taverna.version>
+-->
 	</properties>
 
 	<dependencies>
@@ -149,22 +151,99 @@
                                     <groupId>antlr</groupId>
                                     <artifactId>antlr</artifactId>
                                     <version>2.7.5</version>
-                                    <type>jar</type>
+                                    <type>pom</type>
                                     <outputDirectory>${project.build.directory}/repository/antlr/antlr/2.7.5</outputDirectory>
                                 </artifactItem>
                                 <artifactItem>
                                     <groupId>antlr</groupId>
                                     <artifactId>antlr</artifactId>
                                     <version>2.7.5</version>
-                                    <type>pom</type>
+                                    <type>jar</type>
                                     <outputDirectory>${project.build.directory}/repository/antlr/antlr/2.7.5</outputDirectory>
                                 </artifactItem>
                                 <artifactItem>
-                                    <groupId>avalon-framework</groupId>
-                                    <artifactId>avalon-framework</artifactId>
-                                    <version>4.1.3</version>
+                                    <groupId>junit</groupId>
+                                    <artifactId>junit</artifactId>
+                                    <version>3.8</version>
                                     <type>jar</type>
-                                    <outputDirectory>${project.build.directory}/repository/avalon-framework/avalon-framework/4.1.3</outputDirectory>
+                                    <outputDirectory>${project.build.directory}/repository/junit/junit/3.8</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>junit</groupId>
+                                    <artifactId>junit</artifactId>
+                                    <version>3.8</version>
+                                    <type>pom</type>
+                                    <outputDirectory>${project.build.directory}/repository/junit/junit/3.8</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>commons-logging</groupId>
+                                    <artifactId>commons-logging</artifactId>
+                                    <version>1.1.1</version>
+                                    <type>pom</type>
+                                    <outputDirectory>${project.build.directory}/repository/commons-logging/commons-logging/1.1.1</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>commons-logging</groupId>
+                                    <artifactId>commons-logging</artifactId>
+                                    <version>1.1.1</version>
+                                    <type>jar</type>
+                                    <outputDirectory>${project.build.directory}/repository/commons-logging/commons-logging/1.1.1</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>commons-logging</groupId>
+                                    <artifactId>commons-logging</artifactId>
+                                    <version>1.0</version>
+                                    <type>pom</type>
+                                    <outputDirectory>${project.build.directory}/repository/commons-logging/commons-logging/1.0</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>commons-logging</groupId>
+                                    <artifactId>commons-logging</artifactId>
+                                    <version>1.0</version>
+                                    <type>jar</type>
+                                    <outputDirectory>${project.build.directory}/repository/commons-logging/commons-logging/1.0</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>commons-logging</groupId>
+                                    <artifactId>commons-logging</artifactId>
+                                    <version>1.0.3</version>
+                                    <type>pom</type>
+                                    <outputDirectory>${project.build.directory}/repository/commons-logging/commons-logging/1.0.3</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>commons-logging</groupId>
+                                    <artifactId>commons-logging</artifactId>
+                                    <version>1.0.3</version>
+                                    <type>jar</type>
+                                    <outputDirectory>${project.build.directory}/repository/commons-logging/commons-logging/1.0.3</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>commons-logging</groupId>
+                                    <artifactId>commons-logging</artifactId>
+                                    <version>1.1</version>
+                                    <type>jar</type>
+                                    <outputDirectory>${project.build.directory}/repository/commons-logging/commons-logging/1.1</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>commons-logging</groupId>
+                                    <artifactId>commons-logging</artifactId>
+                                    <version>1.1</version>
+                                    <type>pom</type>
+                                    <outputDirectory>${project.build.directory}/repository/commons-logging/commons-logging/1.1</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>commons-logging</groupId>
+                                    <artifactId>commons-logging-api</artifactId>
+                                    <version>1.1</version>
+                                    <type>jar</type>
+                                    <outputDirectory>${project.build.directory}/repository/commons-logging/commons-logging-api/1.1</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>commons-logging</groupId>
+                                    <artifactId>commons-logging-api</artifactId>
+                                    <version>1.1</version>
+                                    <type>pom</type>
+                                    <outputDirectory>${project.build.directory}/repository/commons-logging/commons-logging-api/1.1</outputDirectory>
                                 </artifactItem>
                                 <artifactItem>
                                     <groupId>avalon-framework</groupId>
@@ -174,46 +253,53 @@
                                     <outputDirectory>${project.build.directory}/repository/avalon-framework/avalon-framework/4.1.3</outputDirectory>
                                 </artifactItem>
                                 <artifactItem>
-                                    <groupId>com.ibm.icu</groupId>
-                                    <artifactId>icu4j</artifactId>
-                                    <version>2.6.1</version>
+                                    <groupId>avalon-framework</groupId>
+                                    <artifactId>avalon-framework</artifactId>
+                                    <version>4.1.3</version>
                                     <type>jar</type>
-                                    <outputDirectory>${project.build.directory}/repository/com/ibm/icu/icu4j/2.6.1</outputDirectory>
+                                    <outputDirectory>${project.build.directory}/repository/avalon-framework/avalon-framework/4.1.3</outputDirectory>
                                 </artifactItem>
                                 <artifactItem>
-                                    <groupId>com.ibm.icu</groupId>
-                                    <artifactId>icu4j</artifactId>
-                                    <version>2.6.1</version>
+                                    <groupId>commons-discovery</groupId>
+                                    <artifactId>commons-discovery</artifactId>
+                                    <version>0.2</version>
                                     <type>pom</type>
-                                    <outputDirectory>${project.build.directory}/repository/com/ibm/icu/icu4j/2.6.1</outputDirectory>
+                                    <outputDirectory>${project.build.directory}/repository/commons-discovery/commons-discovery/0.2</outputDirectory>
                                 </artifactItem>
                                 <artifactItem>
-                                    <groupId>com.ibm.icu</groupId>
-                                    <artifactId>icu4j</artifactId>
-                                    <version>3.4.4</version>
+                                    <groupId>commons-discovery</groupId>
+                                    <artifactId>commons-discovery</artifactId>
+                                    <version>0.2</version>
                                     <type>jar</type>
-                                    <outputDirectory>${project.build.directory}/repository/com/ibm/icu/icu4j/3.4.4</outputDirectory>
+                                    <outputDirectory>${project.build.directory}/repository/commons-discovery/commons-discovery/0.2</outputDirectory>
                                 </artifactItem>
                                 <artifactItem>
-                                    <groupId>com.ibm.icu</groupId>
-                                    <artifactId>icu4j</artifactId>
-                                    <version>3.4.4</version>
+                                    <groupId>servletapi</groupId>
+                                    <artifactId>servletapi</artifactId>
+                                    <version>2.2</version>
                                     <type>pom</type>
-                                    <outputDirectory>${project.build.directory}/repository/com/ibm/icu/icu4j/3.4.4</outputDirectory>
+                                    <outputDirectory>${project.build.directory}/repository/servletapi/servletapi/2.2</outputDirectory>
                                 </artifactItem>
                                 <artifactItem>
-                                    <groupId>commons-beanutils</groupId>
-                                    <artifactId>commons-beanutils</artifactId>
-                                    <version>1.7.0</version>
+                                    <groupId>servletapi</groupId>
+                                    <artifactId>servletapi</artifactId>
+                                    <version>2.2</version>
                                     <type>jar</type>
-                                    <outputDirectory>${project.build.directory}/repository/commons-beanutils/commons-beanutils/1.7.0</outputDirectory>
+                                    <outputDirectory>${project.build.directory}/repository/servletapi/servletapi/2.2</outputDirectory>
                                 </artifactItem>
                                 <artifactItem>
-                                    <groupId>commons-beanutils</groupId>
-                                    <artifactId>commons-beanutils</artifactId>
-                                    <version>1.7.0</version>
+                                    <groupId>commons-collections</groupId>
+                                    <artifactId>commons-collections</artifactId>
+                                    <version>3.2</version>
+                                    <type>jar</type>
+                                    <outputDirectory>${project.build.directory}/repository/commons-collections/commons-collections/3.2</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>commons-collections</groupId>
+                                    <artifactId>commons-collections</artifactId>
+                                    <version>3.2</version>
                                     <type>pom</type>
-                                    <outputDirectory>${project.build.directory}/repository/commons-beanutils/commons-beanutils/1.7.0</outputDirectory>
+                                    <outputDirectory>${project.build.directory}/repository/commons-collections/commons-collections/3.2</outputDirectory>
                                 </artifactItem>
                                 <artifactItem>
                                     <groupId>commons-collections</groupId>
@@ -232,282 +318,30 @@
                                 <artifactItem>
                                     <groupId>commons-collections</groupId>
                                     <artifactId>commons-collections</artifactId>
-                                    <version>3.2</version>
-                                    <type>jar</type>
-                                    <outputDirectory>${project.build.directory}/repository/commons-collections/commons-collections/3.2</outputDirectory>
+                                    <version>3.2.1</version>
+                                    <type>pom</type>
+                                    <outputDirectory>${project.build.directory}/repository/commons-collections/commons-collections/3.2.1</outputDirectory>
                                 </artifactItem>
                                 <artifactItem>
                                     <groupId>commons-collections</groupId>
                                     <artifactId>commons-collections</artifactId>
-                                    <version>3.2</version>
-                                    <type>pom</type>
-                                    <outputDirectory>${project.build.directory}/repository/commons-collections/commons-collections/3.2</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>commons-dbcp</groupId>
-                                    <artifactId>commons-dbcp</artifactId>
-                                    <version>1.1</version>
+                                    <version>3.2.1</version>
                                     <type>jar</type>
-                                    <outputDirectory>${project.build.directory}/repository/commons-dbcp/commons-dbcp/1.1</outputDirectory>
+                                    <outputDirectory>${project.build.directory}/repository/commons-collections/commons-collections/3.2.1</outputDirectory>
                                 </artifactItem>
                                 <artifactItem>
-                                    <groupId>commons-dbcp</groupId>
-                                    <artifactId>commons-dbcp</artifactId>
-                                    <version>1.1</version>
+                                    <groupId>log4j</groupId>
+                                    <artifactId>log4j</artifactId>
+                                    <version>1.2.16</version>
                                     <type>pom</type>
-                                    <outputDirectory>${project.build.directory}/repository/commons-dbcp/commons-dbcp/1.1</outputDirectory>
+                                    <outputDirectory>${project.build.directory}/repository/log4j/log4j/1.2.16</outputDirectory>
                                 </artifactItem>
                                 <artifactItem>
-                                    <groupId>commons-discovery</groupId>
-                                    <artifactId>commons-discovery</artifactId>
-                                    <version>0.2</version>
+                                    <groupId>log4j</groupId>
+                                    <artifactId>log4j</artifactId>
+                                    <version>1.2.16</version>
                                     <type>jar</type>
-                                    <outputDirectory>${project.build.directory}/repository/commons-discovery/commons-discovery/0.2</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>commons-discovery</groupId>
-                                    <artifactId>commons-discovery</artifactId>
-                                    <version>0.2</version>
-                                    <type>pom</type>
-                                    <outputDirectory>${project.build.directory}/repository/commons-discovery/commons-discovery/0.2</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>commons-httpclient</groupId>
-                                    <artifactId>commons-httpclient</artifactId>
-                                    <version>3.0</version>
-                                    <type>jar</type>
-                                    <outputDirectory>${project.build.directory}/repository/commons-httpclient/commons-httpclient/3.0</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>commons-httpclient</groupId>
-                                    <artifactId>commons-httpclient</artifactId>
-                                    <version>3.0</version>
-                                    <type>pom</type>
-                                    <outputDirectory>${project.build.directory}/repository/commons-httpclient/commons-httpclient/3.0</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>commons-io</groupId>
-                                    <artifactId>commons-io</artifactId>
-                                    <version>1.2</version>
-                                    <type>jar</type>
-                                    <outputDirectory>${project.build.directory}/repository/commons-io/commons-io/1.2</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>commons-io</groupId>
-                                    <artifactId>commons-io</artifactId>
-                                    <version>1.2</version>
-                                    <type>pom</type>
-                                    <outputDirectory>${project.build.directory}/repository/commons-io/commons-io/1.2</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>commons-io</groupId>
-                                    <artifactId>commons-io</artifactId>
-                                    <version>1.3.1</version>
-                                    <type>jar</type>
-                                    <outputDirectory>${project.build.directory}/repository/commons-io/commons-io/1.3.1</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>commons-io</groupId>
-                                    <artifactId>commons-io</artifactId>
-                                    <version>1.3.1</version>
-                                    <type>pom</type>
-                                    <outputDirectory>${project.build.directory}/repository/commons-io/commons-io/1.3.1</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>commons-io</groupId>
-                                    <artifactId>commons-io</artifactId>
-                                    <version>1.4</version>
-                                    <type>jar</type>
-                                    <outputDirectory>${project.build.directory}/repository/commons-io/commons-io/1.4</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>commons-io</groupId>
-                                    <artifactId>commons-io</artifactId>
-                                    <version>1.4</version>
-                                    <type>pom</type>
-                                    <outputDirectory>${project.build.directory}/repository/commons-io/commons-io/1.4</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>commons-lang</groupId>
-                                    <artifactId>commons-lang</artifactId>
-                                    <version>2.3</version>
-                                    <type>jar</type>
-                                    <outputDirectory>${project.build.directory}/repository/commons-lang/commons-lang/2.3</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>commons-lang</groupId>
-                                    <artifactId>commons-lang</artifactId>
-                                    <version>2.3</version>
-                                    <type>pom</type>
-                                    <outputDirectory>${project.build.directory}/repository/commons-lang/commons-lang/2.3</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>commons-logging</groupId>
-                                    <artifactId>commons-logging</artifactId>
-                                    <version>1.0.3</version>
-                                    <type>jar</type>
-                                    <outputDirectory>${project.build.directory}/repository/commons-logging/commons-logging/1.0.3</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>commons-logging</groupId>
-                                    <artifactId>commons-logging</artifactId>
-                                    <version>1.0.3</version>
-                                    <type>pom</type>
-                                    <outputDirectory>${project.build.directory}/repository/commons-logging/commons-logging/1.0.3</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>commons-logging</groupId>
-                                    <artifactId>commons-logging</artifactId>
-                                    <version>1.0</version>
-                                    <type>jar</type>
-                                    <outputDirectory>${project.build.directory}/repository/commons-logging/commons-logging/1.0</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>commons-logging</groupId>
-                                    <artifactId>commons-logging</artifactId>
-                                    <version>1.0</version>
-                                    <type>pom</type>
-                                    <outputDirectory>${project.build.directory}/repository/commons-logging/commons-logging/1.0</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>commons-logging</groupId>
-                                    <artifactId>commons-logging</artifactId>
-                                    <version>1.1.1</version>
-                                    <type>jar</type>
-                                    <outputDirectory>${project.build.directory}/repository/commons-logging/commons-logging/1.1.1</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>commons-logging</groupId>
-                                    <artifactId>commons-logging</artifactId>
-                                    <version>1.1.1</version>
-                                    <type>pom</type>
-                                    <outputDirectory>${project.build.directory}/repository/commons-logging/commons-logging/1.1.1</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>commons-logging</groupId>
-                                    <artifactId>commons-logging</artifactId>
-                                    <version>1.1</version>
-                                    <type>jar</type>
-                                    <outputDirectory>${project.build.directory}/repository/commons-logging/commons-logging/1.1</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>commons-logging</groupId>
-                                    <artifactId>commons-logging</artifactId>
-                                    <version>1.1</version>
-                                    <type>pom</type>
-                                    <outputDirectory>${project.build.directory}/repository/commons-logging/commons-logging/1.1</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>commons-pool</groupId>
-                                    <artifactId>commons-pool</artifactId>
-                                    <version>1.1</version>
-                                    <type>jar</type>
-                                    <outputDirectory>${project.build.directory}/repository/commons-pool/commons-pool/1.1</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>commons-pool</groupId>
-                                    <artifactId>commons-pool</artifactId>
-                                    <version>1.1</version>
-                                    <type>pom</type>
-                                    <outputDirectory>${project.build.directory}/repository/commons-pool/commons-pool/1.1</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>dom4j</groupId>
-                                    <artifactId>dom4j</artifactId>
-                                    <version>1.6.1</version>
-                                    <type>jar</type>
-                                    <outputDirectory>${project.build.directory}/repository/dom4j/dom4j/1.6.1</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>dom4j</groupId>
-                                    <artifactId>dom4j</artifactId>
-                                    <version>1.6.1</version>
-                                    <type>pom</type>
-                                    <outputDirectory>${project.build.directory}/repository/dom4j/dom4j/1.6.1</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>javax.mail</groupId>
-                                    <artifactId>mail</artifactId>
-                                    <version>1.4</version>
-                                    <type>jar</type>
-                                    <outputDirectory>${project.build.directory}/repository/javax/mail/mail/1.4</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>javax.mail</groupId>
-                                    <artifactId>mail</artifactId>
-                                    <version>1.4</version>
-                                    <type>pom</type>
-                                    <outputDirectory>${project.build.directory}/repository/javax/mail/mail/1.4</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>javax.servlet</groupId>
-                                    <artifactId>servlet-api</artifactId>
-                                    <version>2.3</version>
-                                    <type>jar</type>
-                                    <outputDirectory>${project.build.directory}/repository/javax/servlet/servlet-api/2.3</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>javax.servlet</groupId>
-                                    <artifactId>servlet-api</artifactId>
-                                    <version>2.3</version>
-                                    <type>pom</type>
-                                    <outputDirectory>${project.build.directory}/repository/javax/servlet/servlet-api/2.3</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>jaxen</groupId>
-                                    <artifactId>jaxen</artifactId>
-                                    <version>1.1.1</version>
-                                    <type>jar</type>
-                                    <outputDirectory>${project.build.directory}/repository/jaxen/jaxen/1.1.1</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>jaxen</groupId>
-                                    <artifactId>jaxen</artifactId>
-                                    <version>1.1.1</version>
-                                    <type>pom</type>
-                                    <outputDirectory>${project.build.directory}/repository/jaxen/jaxen/1.1.1</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>jdom</groupId>
-                                    <artifactId>jdom</artifactId>
-                                    <version>b9</version>
-                                    <type>jar</type>
-                                    <outputDirectory>${project.build.directory}/repository/jdom/jdom/b9</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>jdom</groupId>
-                                    <artifactId>jdom</artifactId>
-                                    <version>b9</version>
-                                    <type>pom</type>
-                                    <outputDirectory>${project.build.directory}/repository/jdom/jdom/b9</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>jmock</groupId>
-                                    <artifactId>jmock</artifactId>
-                                    <version>1.0.1</version>
-                                    <type>jar</type>
-                                    <outputDirectory>${project.build.directory}/repository/jmock/jmock/1.0.1</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>jmock</groupId>
-                                    <artifactId>jmock</artifactId>
-                                    <version>1.0.1</version>
-                                    <type>pom</type>
-                                    <outputDirectory>${project.build.directory}/repository/jmock/jmock/1.0.1</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>junit</groupId>
-                                    <artifactId>junit</artifactId>
-                                    <version>3.8</version>
-                                    <type>jar</type>
-                                    <outputDirectory>${project.build.directory}/repository/junit/junit/3.8</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>junit</groupId>
-                                    <artifactId>junit</artifactId>
-                                    <version>3.8</version>
-                                    <type>pom</type>
-                                    <outputDirectory>${project.build.directory}/repository/junit/junit/3.8</outputDirectory>
+                                    <outputDirectory>${project.build.directory}/repository/log4j/log4j/1.2.16</outputDirectory>
                                 </artifactItem>
                                 <artifactItem>
                                     <groupId>log4j</groupId>
@@ -538,67 +372,11 @@
                                     <outputDirectory>${project.build.directory}/repository/log4j/log4j/1.2.13</outputDirectory>
                                 </artifactItem>
                                 <artifactItem>
-                                    <groupId>logkit</groupId>
-                                    <artifactId>logkit</artifactId>
-                                    <version>1.0.1</version>
+                                    <groupId>org.codehaus.woodstox</groupId>
+                                    <artifactId>wstx-asl</artifactId>
+                                    <version>3.0.0</version>
                                     <type>jar</type>
-                                    <outputDirectory>${project.build.directory}/repository/logkit/logkit/1.0.1</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>logkit</groupId>
-                                    <artifactId>logkit</artifactId>
-                                    <version>1.0.1</version>
-                                    <type>pom</type>
-                                    <outputDirectory>${project.build.directory}/repository/logkit/logkit/1.0.1</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>org.apache</groupId>
-                                    <artifactId>apache</artifactId>
-                                    <version>1</version>
-                                    <type>pom</type>
-                                    <outputDirectory>${project.build.directory}/repository/org/apache/apache/1</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>org.apache</groupId>
-                                    <artifactId>apache</artifactId>
-                                    <version>3</version>
-                                    <type>pom</type>
-                                    <outputDirectory>${project.build.directory}/repository/org/apache/apache/3</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>org.apache</groupId>
-                                    <artifactId>apache</artifactId>
-                                    <version>4</version>
-                                    <type>pom</type>
-                                    <outputDirectory>${project.build.directory}/repository/org/apache/apache/4</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>org.apache.commons</groupId>
-                                    <artifactId>commons-parent</artifactId>
-                                    <version>5</version>
-                                    <type>pom</type>
-                                    <outputDirectory>${project.build.directory}/repository/org/apache/commons/commons-parent/5</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>org.apache.commons</groupId>
-                                    <artifactId>commons-parent</artifactId>
-                                    <version>7</version>
-                                    <type>pom</type>
-                                    <outputDirectory>${project.build.directory}/repository/org/apache/commons/commons-parent/7</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>org.apache.xmlbeans</groupId>
-                                    <artifactId>xmlbeans</artifactId>
-                                    <version>2.3.0</version>
-                                    <type>jar</type>
-                                    <outputDirectory>${project.build.directory}/repository/org/apache/xmlbeans/xmlbeans/2.3.0</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>org.apache.xmlbeans</groupId>
-                                    <artifactId>xmlbeans</artifactId>
-                                    <version>2.3.0</version>
-                                    <type>pom</type>
-                                    <outputDirectory>${project.build.directory}/repository/org/apache/xmlbeans/xmlbeans/2.3.0</outputDirectory>
+                                    <outputDirectory>${project.build.directory}/repository/org/codehaus/woodstox/wstx-asl/3.0.0</outputDirectory>
                                 </artifactItem>
                                 <artifactItem>
                                     <groupId>org.codehaus.woodstox</groupId>
@@ -608,6 +386,55 @@
                                     <outputDirectory>${project.build.directory}/repository/org/codehaus/woodstox/wstx-asl/3.0.0</outputDirectory>
                                 </artifactItem>
                                 <artifactItem>
+                                    <groupId>org.apache.xmlbeans</groupId>
+                                    <artifactId>xmlbeans</artifactId>
+                                    <version>2.3.0</version>
+                                    <type>pom</type>
+                                    <outputDirectory>${project.build.directory}/repository/org/apache/xmlbeans/xmlbeans/2.3.0</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>org.apache.xmlbeans</groupId>
+                                    <artifactId>xmlbeans</artifactId>
+                                    <version>2.3.0</version>
+                                    <type>jar</type>
+                                    <outputDirectory>${project.build.directory}/repository/org/apache/xmlbeans/xmlbeans/2.3.0</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>org.apache</groupId>
+                                    <artifactId>apache</artifactId>
+                                    <version>1</version>
+                                    <type>pom</type>
+                                    <outputDirectory>${project.build.directory}/repository/org/apache/apache/1</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>org.apache.lucene</groupId>
+                                    <artifactId>lucene-core</artifactId>
+                                    <version>2.0.0</version>
+                                    <type>jar</type>
+                                    <outputDirectory>${project.build.directory}/repository/org/apache/lucene/lucene-core/2.0.0</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>org.apache.lucene</groupId>
+                                    <artifactId>lucene-core</artifactId>
+                                    <version>2.0.0</version>
+                                    <type>pom</type>
+                                    <outputDirectory>${project.build.directory}/repository/org/apache/lucene/lucene-core/2.0.0</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>org.apache.commons</groupId>
+                                    <artifactId>commons-parent</artifactId>
+                                    <version>9</version>
+                                    <type>pom</type>
+                                    <outputDirectory>${project.build.directory}/repository/org/apache/commons/commons-parent/9</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>org.apache.commons</groupId>
+                                    <artifactId>commons-parent</artifactId>
+                                    <version>5</version>
+                                    <type>pom</type>
+                                    <outputDirectory>${project.build.directory}/repository/org/apache/commons/commons-parent/5</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
                                     <groupId>org.openoffice</groupId>
                                     <artifactId>juh</artifactId>
                                     <version>2.3.0</version>
@@ -623,20 +450,6 @@
                                 </artifactItem>
                                 <artifactItem>
                                     <groupId>org.openoffice</groupId>
-                                    <artifactId>jurt</artifactId>
-                                    <version>2.3.0</version>
-                                    <type>jar</type>
-                                    <outputDirectory>${project.build.directory}/repository/org/openoffice/jurt/2.3.0</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>org.openoffice</groupId>
-                                    <artifactId>jurt</artifactId>
-                                    <version>2.3.0</version>
-                                    <type>pom</type>
-                                    <outputDirectory>${project.build.directory}/repository/org/openoffice/jurt/2.3.0</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>org.openoffice</groupId>
                                     <artifactId>ridl</artifactId>
                                     <version>2.3.1</version>
                                     <type>jar</type>
@@ -650,6 +463,20 @@
                                     <outputDirectory>${project.build.directory}/repository/org/openoffice/ridl/2.3.1</outputDirectory>
                                 </artifactItem>
                                 <artifactItem>
+                                    <groupId>org.openoffice</groupId>
+                                    <artifactId>jurt</artifactId>
+                                    <version>2.3.0</version>
+                                    <type>jar</type>
+                                    <outputDirectory>${project.build.directory}/repository/org/openoffice/jurt/2.3.0</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>org.openoffice</groupId>
+                                    <artifactId>jurt</artifactId>
+                                    <version>2.3.0</version>
+                                    <type>pom</type>
+                                    <outputDirectory>${project.build.directory}/repository/org/openoffice/jurt/2.3.0</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
                                     <groupId>org.slf4j</groupId>
                                     <artifactId>slf4j-api</artifactId>
                                     <version>1.4.3</version>
@@ -665,38 +492,45 @@
                                 </artifactItem>
                                 <artifactItem>
                                     <groupId>org.slf4j</groupId>
+                                    <artifactId>slf4j-api</artifactId>
+                                    <version>1.5.8</version>
+                                    <type>pom</type>
+                                    <outputDirectory>${project.build.directory}/repository/org/slf4j/slf4j-api/1.5.8</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>org.slf4j</groupId>
+                                    <artifactId>slf4j-api</artifactId>
+                                    <version>1.5.8</version>
+                                    <type>jar</type>
+                                    <outputDirectory>${project.build.directory}/repository/org/slf4j/slf4j-api/1.5.8</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>org.slf4j</groupId>
+                                    <artifactId>slf4j-log4j12</artifactId>
+                                    <version>1.5.8</version>
+                                    <type>pom</type>
+                                    <outputDirectory>${project.build.directory}/repository/org/slf4j/slf4j-log4j12/1.5.8</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>org.slf4j</groupId>
+                                    <artifactId>slf4j-log4j12</artifactId>
+                                    <version>1.5.8</version>
+                                    <type>jar</type>
+                                    <outputDirectory>${project.build.directory}/repository/org/slf4j/slf4j-log4j12/1.5.8</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>org.slf4j</groupId>
                                     <artifactId>slf4j-parent</artifactId>
                                     <version>1.4.3</version>
                                     <type>pom</type>
                                     <outputDirectory>${project.build.directory}/repository/org/slf4j/slf4j-parent/1.4.3</outputDirectory>
                                 </artifactItem>
                                 <artifactItem>
-                                    <groupId>servletapi</groupId>
-                                    <artifactId>servletapi</artifactId>
-                                    <version>2.2</version>
-                                    <type>jar</type>
-                                    <outputDirectory>${project.build.directory}/repository/servletapi/servletapi/2.2</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>servletapi</groupId>
-                                    <artifactId>servletapi</artifactId>
-                                    <version>2.2</version>
+                                    <groupId>org.slf4j</groupId>
+                                    <artifactId>slf4j-parent</artifactId>
+                                    <version>1.5.8</version>
                                     <type>pom</type>
-                                    <outputDirectory>${project.build.directory}/repository/servletapi/servletapi/2.2</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>stax</groupId>
-                                    <artifactId>stax-api</artifactId>
-                                    <version>1.0</version>
-                                    <type>jar</type>
-                                    <outputDirectory>${project.build.directory}/repository/stax/stax-api/1.0</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>stax</groupId>
-                                    <artifactId>stax-api</artifactId>
-                                    <version>1.0</version>
-                                    <type>pom</type>
-                                    <outputDirectory>${project.build.directory}/repository/stax/stax-api/1.0</outputDirectory>
+                                    <outputDirectory>${project.build.directory}/repository/org/slf4j/slf4j-parent/1.5.8</outputDirectory>
                                 </artifactItem>
                                 <artifactItem>
                                     <groupId>xalan</groupId>
@@ -713,11 +547,46 @@
                                     <outputDirectory>${project.build.directory}/repository/xalan/xalan/2.7.0</outputDirectory>
                                 </artifactItem>
                                 <artifactItem>
-                                    <groupId>xerces</groupId>
-                                    <artifactId>xerces</artifactId>
-                                    <version>2.0.2</version>
+                                    <groupId>xalan</groupId>
+                                    <artifactId>xalan</artifactId>
+                                    <version>2.6.0</version>
+                                    <type>pom</type>
+                                    <outputDirectory>${project.build.directory}/repository/xalan/xalan/2.6.0</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>xalan</groupId>
+                                    <artifactId>xalan</artifactId>
+                                    <version>2.6.0</version>
                                     <type>jar</type>
-                                    <outputDirectory>${project.build.directory}/repository/xerces/xerces/2.0.2</outputDirectory>
+                                    <outputDirectory>${project.build.directory}/repository/xalan/xalan/2.6.0</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>logkit</groupId>
+                                    <artifactId>logkit</artifactId>
+                                    <version>1.0.1</version>
+                                    <type>jar</type>
+                                    <outputDirectory>${project.build.directory}/repository/logkit/logkit/1.0.1</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>logkit</groupId>
+                                    <artifactId>logkit</artifactId>
+                                    <version>1.0.1</version>
+                                    <type>pom</type>
+                                    <outputDirectory>${project.build.directory}/repository/logkit/logkit/1.0.1</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>commons-dbcp</groupId>
+                                    <artifactId>commons-dbcp</artifactId>
+                                    <version>1.1</version>
+                                    <type>pom</type>
+                                    <outputDirectory>${project.build.directory}/repository/commons-dbcp/commons-dbcp/1.1</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>commons-dbcp</groupId>
+                                    <artifactId>commons-dbcp</artifactId>
+                                    <version>1.1</version>
+                                    <type>jar</type>
+                                    <outputDirectory>${project.build.directory}/repository/commons-dbcp/commons-dbcp/1.1</outputDirectory>
                                 </artifactItem>
                                 <artifactItem>
                                     <groupId>xerces</groupId>
@@ -728,31 +597,10 @@
                                 </artifactItem>
                                 <artifactItem>
                                     <groupId>xerces</groupId>
-                                    <artifactId>xercesImpl</artifactId>
-                                    <version>2.8.1</version>
+                                    <artifactId>xerces</artifactId>
+                                    <version>2.0.2</version>
                                     <type>jar</type>
-                                    <outputDirectory>${project.build.directory}/repository/xerces/xercesImpl/2.8.1</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>xerces</groupId>
-                                    <artifactId>xercesImpl</artifactId>
-                                    <version>2.8.1</version>
-                                    <type>pom</type>
-                                    <outputDirectory>${project.build.directory}/repository/xerces/xercesImpl/2.8.1</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>xerces</groupId>
-                                    <artifactId>xercesImpl</artifactId>
-                                    <version>2.9.1</version>
-                                    <type>jar</type>
-                                    <outputDirectory>${project.build.directory}/repository/xerces/xercesImpl/2.9.1</outputDirectory>
-                                </artifactItem>
-                                <artifactItem>
-                                    <groupId>xerces</groupId>
-                                    <artifactId>xercesImpl</artifactId>
-                                    <version>2.9.1</version>
-                                    <type>pom</type>
-                                    <outputDirectory>${project.build.directory}/repository/xerces/xercesImpl/2.9.1</outputDirectory>
+                                    <outputDirectory>${project.build.directory}/repository/xerces/xerces/2.0.2</outputDirectory>
                                 </artifactItem>
                                 <artifactItem>
                                     <groupId>xerces</groupId>
@@ -783,25 +631,88 @@
                                     <outputDirectory>${project.build.directory}/repository/xerces/xmlParserAPIs/2.6.2</outputDirectory>
                                 </artifactItem>
                                 <artifactItem>
-                                    <groupId>xml-apis</groupId>
-                                    <artifactId>xml-apis</artifactId>
-                                    <version>1.3.02</version>
+                                    <groupId>xerces</groupId>
+                                    <artifactId>xercesImpl</artifactId>
+                                    <version>2.7.1</version>
                                     <type>jar</type>
-                                    <outputDirectory>${project.build.directory}/repository/xml-apis/xml-apis/1.3.02</outputDirectory>
+                                    <outputDirectory>${project.build.directory}/repository/xerces/xercesImpl/2.7.1</outputDirectory>
                                 </artifactItem>
                                 <artifactItem>
-                                    <groupId>xml-apis</groupId>
-                                    <artifactId>xml-apis</artifactId>
-                                    <version>1.3.02</version>
+                                    <groupId>xerces</groupId>
+                                    <artifactId>xercesImpl</artifactId>
+                                    <version>2.7.1</version>
                                     <type>pom</type>
-                                    <outputDirectory>${project.build.directory}/repository/xml-apis/xml-apis/1.3.02</outputDirectory>
+                                    <outputDirectory>${project.build.directory}/repository/xerces/xercesImpl/2.7.1</outputDirectory>
                                 </artifactItem>
                                 <artifactItem>
-                                    <groupId>xml-apis</groupId>
-                                    <artifactId>xml-apis</artifactId>
-                                    <version>1.3.03</version>
+                                    <groupId>xerces</groupId>
+                                    <artifactId>xercesImpl</artifactId>
+                                    <version>2.8.1</version>
+                                    <type>pom</type>
+                                    <outputDirectory>${project.build.directory}/repository/xerces/xercesImpl/2.8.1</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>xerces</groupId>
+                                    <artifactId>xercesImpl</artifactId>
+                                    <version>2.8.1</version>
                                     <type>jar</type>
-                                    <outputDirectory>${project.build.directory}/repository/xml-apis/xml-apis/1.3.03</outputDirectory>
+                                    <outputDirectory>${project.build.directory}/repository/xerces/xercesImpl/2.8.1</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>xerces</groupId>
+                                    <artifactId>xercesImpl</artifactId>
+                                    <version>2.6.2</version>
+                                    <type>jar</type>
+                                    <outputDirectory>${project.build.directory}/repository/xerces/xercesImpl/2.6.2</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>xerces</groupId>
+                                    <artifactId>xercesImpl</artifactId>
+                                    <version>2.6.2</version>
+                                    <type>pom</type>
+                                    <outputDirectory>${project.build.directory}/repository/xerces/xercesImpl/2.6.2</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>uk.org.mygrid.resources.mimeutil</groupId>
+                                    <artifactId>mime-util</artifactId>
+                                    <version>2.1.2-3</version>
+                                    <type>jar</type>
+                                    <outputDirectory>${project.build.directory}/repository/uk/org/mygrid/resources/mimeutil/mime-util/2.1.2-3</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>uk.org.mygrid.resources.mimeutil</groupId>
+                                    <artifactId>mime-util</artifactId>
+                                    <version>2.1.2-3</version>
+                                    <type>pom</type>
+                                    <outputDirectory>${project.build.directory}/repository/uk/org/mygrid/resources/mimeutil/mime-util/2.1.2-3</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>commons-lang</groupId>
+                                    <artifactId>commons-lang</artifactId>
+                                    <version>2.2</version>
+                                    <type>jar</type>
+                                    <outputDirectory>${project.build.directory}/repository/commons-lang/commons-lang/2.2</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>commons-lang</groupId>
+                                    <artifactId>commons-lang</artifactId>
+                                    <version>2.2</version>
+                                    <type>pom</type>
+                                    <outputDirectory>${project.build.directory}/repository/commons-lang/commons-lang/2.2</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>commons-lang</groupId>
+                                    <artifactId>commons-lang</artifactId>
+                                    <version>2.3</version>
+                                    <type>jar</type>
+                                    <outputDirectory>${project.build.directory}/repository/commons-lang/commons-lang/2.3</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>commons-lang</groupId>
+                                    <artifactId>commons-lang</artifactId>
+                                    <version>2.3</version>
+                                    <type>pom</type>
+                                    <outputDirectory>${project.build.directory}/repository/commons-lang/commons-lang/2.3</outputDirectory>
                                 </artifactItem>
                                 <artifactItem>
                                     <groupId>xml-apis</groupId>
@@ -813,16 +724,16 @@
                                 <artifactItem>
                                     <groupId>xml-apis</groupId>
                                     <artifactId>xml-apis</artifactId>
-                                    <version>1.3.04</version>
+                                    <version>1.3.03</version>
                                     <type>jar</type>
-                                    <outputDirectory>${project.build.directory}/repository/xml-apis/xml-apis/1.3.04</outputDirectory>
+                                    <outputDirectory>${project.build.directory}/repository/xml-apis/xml-apis/1.3.03</outputDirectory>
                                 </artifactItem>
                                 <artifactItem>
                                     <groupId>xml-apis</groupId>
                                     <artifactId>xml-apis</artifactId>
-                                    <version>1.3.04</version>
+                                    <version>2.0.2</version>
                                     <type>pom</type>
-                                    <outputDirectory>${project.build.directory}/repository/xml-apis/xml-apis/1.3.04</outputDirectory>
+                                    <outputDirectory>${project.build.directory}/repository/xml-apis/xml-apis/2.0.2</outputDirectory>
                                 </artifactItem>
                                 <artifactItem>
                                     <groupId>xml-apis</groupId>
@@ -834,27 +745,369 @@
                                 <artifactItem>
                                     <groupId>xml-apis</groupId>
                                     <artifactId>xml-apis</artifactId>
-                                    <version>2.0.2</version>
+                                    <version>1.3.04</version>
                                     <type>pom</type>
-                                    <outputDirectory>${project.build.directory}/repository/xml-apis/xml-apis/2.0.2</outputDirectory>
+                                    <outputDirectory>${project.build.directory}/repository/xml-apis/xml-apis/1.3.04</outputDirectory>
                                 </artifactItem>
                                 <artifactItem>
-                                    <groupId>xom</groupId>
-                                    <artifactId>xom</artifactId>
+                                    <groupId>xml-apis</groupId>
+                                    <artifactId>xml-apis</artifactId>
+                                    <version>1.3.04</version>
+                                    <type>jar</type>
+                                    <outputDirectory>${project.build.directory}/repository/xml-apis/xml-apis/1.3.04</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>xml-apis</groupId>
+                                    <artifactId>xml-apis</artifactId>
+                                    <version>1.0.b2</version>
+                                    <type>pom</type>
+                                    <outputDirectory>${project.build.directory}/repository/xml-apis/xml-apis/1.0.b2</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>xml-apis</groupId>
+                                    <artifactId>xml-apis</artifactId>
+                                    <version>1.0.b2</version>
+                                    <type>jar</type>
+                                    <outputDirectory>${project.build.directory}/repository/xml-apis/xml-apis/1.0.b2</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>jdom</groupId>
+                                    <artifactId>jdom</artifactId>
+                                    <version>b9</version>
+                                    <type>pom</type>
+                                    <outputDirectory>${project.build.directory}/repository/jdom/jdom/b9</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>jdom</groupId>
+                                    <artifactId>jdom</artifactId>
+                                    <version>b9</version>
+                                    <type>jar</type>
+                                    <outputDirectory>${project.build.directory}/repository/jdom/jdom/b9</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>commons-codec</groupId>
+                                    <artifactId>commons-codec</artifactId>
+                                    <version>1.3</version>
+                                    <type>jar</type>
+                                    <outputDirectory>${project.build.directory}/repository/commons-codec/commons-codec/1.3</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>commons-codec</groupId>
+                                    <artifactId>commons-codec</artifactId>
+                                    <version>1.3</version>
+                                    <type>pom</type>
+                                    <outputDirectory>${project.build.directory}/repository/commons-codec/commons-codec/1.3</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>commons-codec</groupId>
+                                    <artifactId>commons-codec</artifactId>
+                                    <version>1.2</version>
+                                    <type>jar</type>
+                                    <outputDirectory>${project.build.directory}/repository/commons-codec/commons-codec/1.2</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>commons-codec</groupId>
+                                    <artifactId>commons-codec</artifactId>
+                                    <version>1.2</version>
+                                    <type>pom</type>
+                                    <outputDirectory>${project.build.directory}/repository/commons-codec/commons-codec/1.2</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>stax</groupId>
+                                    <artifactId>stax-api</artifactId>
                                     <version>1.0</version>
                                     <type>jar</type>
-                                    <outputDirectory>${project.build.directory}/repository/xom/xom/1.0</outputDirectory>
+                                    <outputDirectory>${project.build.directory}/repository/stax/stax-api/1.0</outputDirectory>
                                 </artifactItem>
                                 <artifactItem>
-                                    <groupId>xom</groupId>
-                                    <artifactId>xom</artifactId>
+                                    <groupId>stax</groupId>
+                                    <artifactId>stax-api</artifactId>
                                     <version>1.0</version>
                                     <type>pom</type>
-                                    <outputDirectory>${project.build.directory}/repository/xom/xom/1.0</outputDirectory>
+                                    <outputDirectory>${project.build.directory}/repository/stax/stax-api/1.0</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>jmock</groupId>
+                                    <artifactId>jmock</artifactId>
+                                    <version>1.0.1</version>
+                                    <type>jar</type>
+                                    <outputDirectory>${project.build.directory}/repository/jmock/jmock/1.0.1</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>jmock</groupId>
+                                    <artifactId>jmock</artifactId>
+                                    <version>1.0.1</version>
+                                    <type>pom</type>
+                                    <outputDirectory>${project.build.directory}/repository/jmock/jmock/1.0.1</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>com.sun.xml.bind</groupId>
+                                    <artifactId>jaxb-impl</artifactId>
+                                    <version>2.1.6</version>
+                                    <type>pom</type>
+                                    <outputDirectory>${project.build.directory}/repository/com/sun/xml/bind/jaxb-impl/2.1.6</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>com.sun.xml.bind</groupId>
+                                    <artifactId>jaxb-impl</artifactId>
+                                    <version>2.1.6</version>
+                                    <type>jar</type>
+                                    <outputDirectory>${project.build.directory}/repository/com/sun/xml/bind/jaxb-impl/2.1.6</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>com.sun.xml.bind</groupId>
+                                    <artifactId>jaxb-impl</artifactId>
+                                    <version>2.1.10</version>
+                                    <type>pom</type>
+                                    <outputDirectory>${project.build.directory}/repository/com/sun/xml/bind/jaxb-impl/2.1.10</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>com.sun.xml.bind</groupId>
+                                    <artifactId>jaxb-impl</artifactId>
+                                    <version>2.1.10</version>
+                                    <type>jar</type>
+                                    <outputDirectory>${project.build.directory}/repository/com/sun/xml/bind/jaxb-impl/2.1.10</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>com.ibm.icu</groupId>
+                                    <artifactId>icu4j</artifactId>
+                                    <version>2.6.1</version>
+                                    <type>jar</type>
+                                    <outputDirectory>${project.build.directory}/repository/com/ibm/icu/icu4j/2.6.1</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>com.ibm.icu</groupId>
+                                    <artifactId>icu4j</artifactId>
+                                    <version>2.6.1</version>
+                                    <type>pom</type>
+                                    <outputDirectory>${project.build.directory}/repository/com/ibm/icu/icu4j/2.6.1</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>com.ibm.icu</groupId>
+                                    <artifactId>icu4j</artifactId>
+                                    <version>3.8</version>
+                                    <type>jar</type>
+                                    <outputDirectory>${project.build.directory}/repository/com/ibm/icu/icu4j/3.8</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>com.ibm.icu</groupId>
+                                    <artifactId>icu4j</artifactId>
+                                    <version>3.8</version>
+                                    <type>pom</type>
+                                    <outputDirectory>${project.build.directory}/repository/com/ibm/icu/icu4j/3.8</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>com.hp.hpl.jena</groupId>
+                                    <artifactId>arq-extra</artifactId>
+                                    <version>2.1</version>
+                                    <type>pom</type>
+                                    <outputDirectory>${project.build.directory}/repository/com/hp/hpl/jena/arq-extra/2.1</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>com.hp.hpl.jena</groupId>
+                                    <artifactId>arq-extra</artifactId>
+                                    <version>2.1</version>
+                                    <type>jar</type>
+                                    <outputDirectory>${project.build.directory}/repository/com/hp/hpl/jena/arq-extra/2.1</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>com.hp.hpl.jena</groupId>
+                                    <artifactId>jenatest</artifactId>
+                                    <version>2.5.4</version>
+                                    <type>jar</type>
+                                    <outputDirectory>${project.build.directory}/repository/com/hp/hpl/jena/jenatest/2.5.4</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>com.hp.hpl.jena</groupId>
+                                    <artifactId>jenatest</artifactId>
+                                    <version>2.5.4</version>
+                                    <type>pom</type>
+                                    <outputDirectory>${project.build.directory}/repository/com/hp/hpl/jena/jenatest/2.5.4</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>com.hp.hpl.jena</groupId>
+                                    <artifactId>jena</artifactId>
+                                    <version>2.5.4</version>
+                                    <type>pom</type>
+                                    <outputDirectory>${project.build.directory}/repository/com/hp/hpl/jena/jena/2.5.4</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>com.hp.hpl.jena</groupId>
+                                    <artifactId>jena</artifactId>
+                                    <version>2.5.4</version>
+                                    <type>jar</type>
+                                    <outputDirectory>${project.build.directory}/repository/com/hp/hpl/jena/jena/2.5.4</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>com.hp.hpl.jena</groupId>
+                                    <artifactId>json-jena</artifactId>
+                                    <version>1.0</version>
+                                    <type>pom</type>
+                                    <outputDirectory>${project.build.directory}/repository/com/hp/hpl/jena/json-jena/1.0</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>com.hp.hpl.jena</groupId>
+                                    <artifactId>json-jena</artifactId>
+                                    <version>1.0</version>
+                                    <type>jar</type>
+                                    <outputDirectory>${project.build.directory}/repository/com/hp/hpl/jena/json-jena/1.0</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>com.hp.hpl.jena</groupId>
+                                    <artifactId>iri</artifactId>
+                                    <version>0.5</version>
+                                    <type>jar</type>
+                                    <outputDirectory>${project.build.directory}/repository/com/hp/hpl/jena/iri/0.5</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>com.hp.hpl.jena</groupId>
+                                    <artifactId>iri</artifactId>
+                                    <version>0.5</version>
+                                    <type>pom</type>
+                                    <outputDirectory>${project.build.directory}/repository/com/hp/hpl/jena/iri/0.5</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>com.hp.hpl.jena</groupId>
+                                    <artifactId>concurrent-jena</artifactId>
+                                    <version>1.3.2</version>
+                                    <type>pom</type>
+                                    <outputDirectory>${project.build.directory}/repository/com/hp/hpl/jena/concurrent-jena/1.3.2</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>com.hp.hpl.jena</groupId>
+                                    <artifactId>concurrent-jena</artifactId>
+                                    <version>1.3.2</version>
+                                    <type>jar</type>
+                                    <outputDirectory>${project.build.directory}/repository/com/hp/hpl/jena/concurrent-jena/1.3.2</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>com.hp.hpl.jena</groupId>
+                                    <artifactId>arq</artifactId>
+                                    <version>2.1</version>
+                                    <type>jar</type>
+                                    <outputDirectory>${project.build.directory}/repository/com/hp/hpl/jena/arq/2.1</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>com.hp.hpl.jena</groupId>
+                                    <artifactId>arq</artifactId>
+                                    <version>2.1</version>
+                                    <type>pom</type>
+                                    <outputDirectory>${project.build.directory}/repository/com/hp/hpl/jena/arq/2.1</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>commons-io</groupId>
+                                    <artifactId>commons-io</artifactId>
+                                    <version>1.3.1</version>
+                                    <type>jar</type>
+                                    <outputDirectory>${project.build.directory}/repository/commons-io/commons-io/1.3.1</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>commons-io</groupId>
+                                    <artifactId>commons-io</artifactId>
+                                    <version>1.3.1</version>
+                                    <type>pom</type>
+                                    <outputDirectory>${project.build.directory}/repository/commons-io/commons-io/1.3.1</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>commons-io</groupId>
+                                    <artifactId>commons-io</artifactId>
+                                    <version>1.2</version>
+                                    <type>pom</type>
+                                    <outputDirectory>${project.build.directory}/repository/commons-io/commons-io/1.2</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>commons-io</groupId>
+                                    <artifactId>commons-io</artifactId>
+                                    <version>1.2</version>
+                                    <type>jar</type>
+                                    <outputDirectory>${project.build.directory}/repository/commons-io/commons-io/1.2</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>commons-pool</groupId>
+                                    <artifactId>commons-pool</artifactId>
+                                    <version>1.1</version>
+                                    <type>jar</type>
+                                    <outputDirectory>${project.build.directory}/repository/commons-pool/commons-pool/1.1</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>commons-pool</groupId>
+                                    <artifactId>commons-pool</artifactId>
+                                    <version>1.1</version>
+                                    <type>pom</type>
+                                    <outputDirectory>${project.build.directory}/repository/commons-pool/commons-pool/1.1</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>javax.servlet</groupId>
+                                    <artifactId>servlet-api</artifactId>
+                                    <version>2.3</version>
+                                    <type>jar</type>
+                                    <outputDirectory>${project.build.directory}/repository/javax/servlet/servlet-api/2.3</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>javax.servlet</groupId>
+                                    <artifactId>servlet-api</artifactId>
+                                    <version>2.3</version>
+                                    <type>pom</type>
+                                    <outputDirectory>${project.build.directory}/repository/javax/servlet/servlet-api/2.3</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>javax.mail</groupId>
+                                    <artifactId>mail</artifactId>
+                                    <version>1.4</version>
+                                    <type>pom</type>
+                                    <outputDirectory>${project.build.directory}/repository/javax/mail/mail/1.4</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>javax.mail</groupId>
+                                    <artifactId>mail</artifactId>
+                                    <version>1.4</version>
+                                    <type>jar</type>
+                                    <outputDirectory>${project.build.directory}/repository/javax/mail/mail/1.4</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>javax.xml.stream</groupId>
+                                    <artifactId>stax-api</artifactId>
+                                    <version>1.0</version>
+                                    <type>jar</type>
+                                    <outputDirectory>${project.build.directory}/repository/javax/xml/stream/stax-api/1.0</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>javax.xml.stream</groupId>
+                                    <artifactId>stax-api</artifactId>
+                                    <version>1.0</version>
+                                    <type>pom</type>
+                                    <outputDirectory>${project.build.directory}/repository/javax/xml/stream/stax-api/1.0</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>javax.activation</groupId>
+                                    <artifactId>activation</artifactId>
+                                    <version>1.1</version>
+                                    <type>jar</type>
+                                    <outputDirectory>${project.build.directory}/repository/javax/activation/activation/1.1</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>javax.activation</groupId>
+                                    <artifactId>activation</artifactId>
+                                    <version>1.1</version>
+                                    <type>pom</type>
+                                    <outputDirectory>${project.build.directory}/repository/javax/activation/activation/1.1</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>commons-beanutils</groupId>
+                                    <artifactId>commons-beanutils</artifactId>
+                                    <version>1.7.0</version>
+                                    <type>pom</type>
+                                    <outputDirectory>${project.build.directory}/repository/commons-beanutils/commons-beanutils/1.7.0</outputDirectory>
+                                </artifactItem>
+                                <artifactItem>
+                                    <groupId>commons-beanutils</groupId>
+                                    <artifactId>commons-beanutils</artifactId>
+                                    <version>1.7.0</version>
+                                    <type>jar</type>
+                                    <outputDirectory>${project.build.directory}/repository/commons-beanutils/commons-beanutils/1.7.0</outputDirectory>
                                 </artifactItem>
 
-								
-							</artifactItems>
+                              </artifactItems>
 						</configuration>
 					</execution>
 				</executions>
@@ -865,64 +1118,39 @@
 
 	<repositories>
 		<repository>
-			<releases />
-			<snapshots>
-				<enabled>false</enabled>
-			</snapshots>
 			<id>mygrid-repository</id>
 			<name>myGrid Repository</name>
 			<url>http://www.mygrid.org.uk/maven/repository</url>
-		</repository>
-		<repository>
-			<id>eviware</id>
-			<name>Eviware repository</name>
-			<url>http://www.eviware.com/repository/maven2</url>
 			<releases />
 			<snapshots>
 				<enabled>false</enabled>
 			</snapshots>
 		</repository>
 		<repository>
-			<id>biomoby</id>
-			<url>http://biomoby.org/m2repo</url>
-			<releases />
-			<snapshots>
+			<id>mygrid-snapshot-repository</id>
+			<name>myGrid Snapshot Repository</name>
+			<url>http://www.mygrid.org.uk/maven/snapshot-repository</url>
+			<releases>
 				<enabled>false</enabled>
-			</snapshots>
+			</releases>
+			<snapshots />
 		</repository>
+			<!-- WARNING: Might give silly 405 errors 
+			 -->
+<!--
 		<repository>
-			<id>java.net</id>
-			<url>http://download.java.net/maven/2</url>
-			<releases />
+			<id>odftoolkit</id>
+			<name>Odftoolkit Repository</name>
+			<url>http://odftoolkit.org/svn/odfdom~maven2/release/</url>
+			<releases>						
+				<checksumPolicy>fail</checksumPolicy>				
+				<updatePolicy>never</updatePolicy>
+			</releases>
 			<snapshots>
-				<enabled>false</enabled>
+				<enabled>false</enabled>				
 			</snapshots>
 		</repository>
-		<repository>
-			<id>jboss.org</id>
-			<url>http://repository.jboss.org/maven2</url>
-			<releases />
-			<snapshots>
-				<enabled>false</enabled>
-			</snapshots>
-		</repository>
-		<repository>
-			<snapshots>
-				<enabled>true</enabled>
-			</snapshots>
-			<id>tupelo2</id>
-			<name>tupelo2</name>
-			<url>http://dlt-dev.ncsa.uiuc.edu/m2</url>
-		</repository>
-		<repository>
-			<releases />
-			<snapshots>
-				<enabled>false</enabled>
-			</snapshots>
-			<id>opm-releases</id>
-			<name>opm</name>
-			<url>http://openprovenance.org/java/maven-releases</url>
-		</repository>
+-->
 	</repositories>
 	<scm>
 		<connection>scm:svn:http://taverna.googlecode.com/svn/taverna/products/net.sf.taverna.t2.taverna-commandline/trunk/</connection>
diff --git a/src/main/assembly/resources-component.xml b/src/main/assembly/resources-component.xml
index 7ce641f..4d95210 100644
--- a/src/main/assembly/resources-component.xml
+++ b/src/main/assembly/resources-component.xml
@@ -1,8 +1,8 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <component
-	xmlns="http://maven.apache.org/plugins/maven-assembly-plugin/assembly/1.1.0"
+	xmlns="http://maven.apache.org/plugins/maven-assembly-plugin/component/1.1.2"
 	xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
-	xsi:schemaLocation="http://maven.apache.org/plugins/maven-assembly-plugin/assembly/1.1.0 http://maven.apache.org/xsd/assembly-1.1.0.xsd">
+	xsi:schemaLocation="http://maven.apache.org/plugins/maven-assembly-plugin/component/1.1.2 http://maven.apache.org/xsd/component-1.1.2.xsd">
 	
 	<dependencySets>
 		<dependencySet>
@@ -10,12 +10,14 @@
 			<unpackOptions>
 				<includes>				
 					<include>conf/log4j.properties</include>
-					<include>executeworkflow.*</include>
+					<include>executeworkflow.bat</include>
+					<include>executeworkflow.sh</include>
 					<include>known-issues.txt</include>
 					<include>release-notes.txt</include>
 					<include>LICENCE.txt</include>
 				</includes>
 			</unpackOptions>
+			<fileMode>0755</fileMode>
 		</dependencySet>
 	</dependencySets>
 	<fileSets>
diff --git a/src/main/resources/plugins/plugins.xml b/src/main/resources/plugins/plugins.xml
index 18ed534..f17b0f8 100644
--- a/src/main/resources/plugins/plugins.xml
+++ b/src/main/resources/plugins/plugins.xml
@@ -11,16 +11,14 @@
         <enabled>true</enabled>

         <repositories>

             <repository>http://www.mygrid.org.uk/maven/repository/</repository>

-            <repository>http://bioinf.ncl.ac.uk/mirror/maven/repository/</repository>

-            <repository>http://mirror.omii.ac.uk/maven/repository/</repository>

             <repository>http://www.mygrid.org.uk/maven/repo1/</repository>

-            <repository>http://moby.ucalgary.ca/moby_maven/</repository>

-            <repository>http://biomoby.org/m2repo/</repository>

+            <repository>http://www.mygrid.org.uk/maven/biomoby/biomoby.org/m2repo/</repository>            

             <repository>http://repository.jboss.com/maven2/</repository>

             <repository>http://download.java.net/maven/2/</repository>

             <repository>http://ibiblio.lsu.edu/main/pub/packages/maven2/</repository>

             <repository>http://ws.zones.apache.org/repository2/</repository>

             <repository>http://www.eviware.com/repository/maven2/</repository>

+            <repository>http://odftoolkit.org/svn/odfdom~maven2/release/</repository>

         </repositories>

         <profile>

             <dependency>

@@ -44,16 +42,16 @@
         <enabled>true</enabled>

         <repositories>

             <repository>http://www.mygrid.org.uk/maven/repository/</repository>

-            <repository>http://bioinf.ncl.ac.uk/mirror/maven/repository/</repository>

-            <repository>http://mirror.omii.ac.uk/maven/repository/</repository>

             <repository>http://www.mygrid.org.uk/maven/repo1/</repository>

-            <repository>http://moby.ucalgary.ca/moby_maven/</repository>

-            <repository>http://biomoby.org/m2repo/</repository>

+            <repository>http://www.mygrid.org.uk/maven/biomoby/biomoby.org/m2repo/</repository>            

             <repository>http://repository.jboss.com/maven2/</repository>

             <repository>http://download.java.net/maven/2/</repository>

             <repository>http://ibiblio.lsu.edu/main/pub/packages/maven2/</repository>

             <repository>http://ws.zones.apache.org/repository2/</repository>

             <repository>http://www.eviware.com/repository/maven2/</repository>

+	    <!--<repository>http://dlt-dev.ncsa.uiuc.edu/m2/</repository>-->

+	    <repository>http://openprovenance.org/java/maven-releases/</repository>

+	    <repository>http://openjena.org/repo/</repository>

         </repositories>

         <profile>

             <dependency>

@@ -77,16 +75,18 @@
         <enabled>true</enabled>

         <repositories>            

             <repository>http://www.mygrid.org.uk/maven/repository/</repository>

-            <repository>http://bioinf.ncl.ac.uk/mirror/maven/repository/</repository>

-            <repository>http://mirror.omii.ac.uk/maven/repository/</repository>

             <repository>http://www.mygrid.org.uk/maven/repo1/</repository>

-            <repository>http://moby.ucalgary.ca/moby_maven/</repository>

-            <repository>http://biomoby.org/m2repo/</repository>

+            <repository>http://www.mygrid.org.uk/maven/biomoby/biomoby.org/m2repo/</repository>            

             <repository>http://repository.jboss.com/maven2/</repository>

             <repository>http://download.java.net/maven/2/</repository>

             <repository>http://ibiblio.lsu.edu/main/pub/packages/maven2/</repository>

             <repository>http://ws.zones.apache.org/repository2/</repository>

             <repository>http://www.eviware.com/repository/maven2/</repository>

+            <repository>http://odftoolkit.org/svn/odfdom~maven2/release/</repository>

+	    <!--<repository>http://dlt-dev.ncsa.uiuc.edu/m2/</repository>-->

+	    <repository>http://openprovenance.org/java/maven-releases/</repository>

+	    <repository>http://openjena.org/repo/</repository>

+            <repository>http://repo.fusesource.com/maven2-all</repository>

         </repositories>

         <profile>

             <dependency>

diff --git a/src/main/resources/readme.txt b/src/main/resources/readme.txt
index 6960c4d..9f6b134 100644
--- a/src/main/resources/readme.txt
+++ b/src/main/resources/readme.txt
@@ -1,34 +1,42 @@
 ===============================

-Taverna command line tool 2.2.0

+Taverna command line tool 2.3.0

 ===============================

 http://www.taverna.org.uk/

 http://www.mygrid.org.uk/

 

-Released by myGrid, 2010-07-05

-(c) Copyright 2005-2010 University of Manchester, UK

+Released by myGrid, 2011-07-14

+(c) Copyright 2005-2011 University of Manchester, UK

 

 

 Licence

 =======

 Taverna is licenced under the GNU Lesser General Public Licence. (LGPL) 2.1.

-See the file LICENCE.txt for details.

+See the file LICENCE.txt or http://www.gnu.org/licenses/lgpl-2.1.html for

+details.

 

 If the source code was not included in this download, you can download it from

+http://www.taverna.org.uk/download/workbench/2-3/#download-source or 

 http://www.taverna.org.uk/download/source-code/

 

 Taverna uses various third-party libraries that are included under compatible

-open source licences such as Apache Licence.

+open source licences such as the Apache Licence.

 

 

 Documentation

 =============

 See http://www.taverna.org.uk/documentation/taverna-2-x/ for

-documentation and tutorials on using Taverna, in particular 

+documentation and tutorials on using Taverna.

+

+In particular

 http://www.taverna.org.uk/documentation/taverna-2-x/command-line-tool/

+and http://www.mygrid.org.uk/dev/wiki/display/taverna23/Command+Line+Tool

 will explain how to use the command line tool.

 

-See the file known-issues.txt for known issues with this release, and the file

-release-notes.txt for improvements since the previous version of Taverna.

+See http://www.mygrid.org.uk/dev/wiki/display/taverna23/User+Manual for the

+Taverna 2.3 user manual.

+

+See the file "known-issues.txt" for known issues with this release, and the file

+"release-notes.txt" for improvements since the previous version of Taverna.

 

 

 Usage

@@ -36,7 +44,7 @@
 In Windows, execute "executeworkflow.bat", while on OSX/Linux/UNIX,

 execute "sh executeworkflow.sh".

 

-On UNIX you may set the executable bit using 

+On Linux/OSX/UNIX you may set the executable bit using 

 "chmod 755 executeworkflow.sh", allowing you to execute ./executeworkflow.sh

 directly. You can make symlinks to this shell script from /usr/local/bin or

 equivalent. 

@@ -91,7 +99,7 @@
 

 For example:

 

-$ taverna-commandline-2.2.0/executeworkflow.sh Retrieve_sequence_in_EMBL_format.t2flow

+$ taverna-commandline-2.3.0/executeworkflow.sh Retrieve_sequence_in_EMBL_format.t2flow

 Outputs will be saved to the directory:

 /home/stain/Desktop/Retrieve_sequence_in_EMBL_format_output

 

@@ -112,19 +120,13 @@
 http://www.myexperiment.org/workflows/1004/download/retrieve_sequence_in_embl_format_873401.t2flow

 

    

-Example workflows

-=================

-Example Taverna 2.2 workflows can be found in the myExperiment starter pack at

-http://www.myexperiment.org/packs/122

-

-You can also access these as the tab 'Starter pack' under the *myExperiment*

-view inside Taverna.

+Examples

+========

+Example Taverna 2.3 workflows can be found in the myExperiment starter pack at

+http://www.myexperiment.org/packs/192

 

 You can share and find other workflows at http://www.myexperiment.org/

 

-You can build your own workflows using the Taverna Workbench. See

-http://www.taverna.org.uk/download/workbench/

-

 

 Support

 =======

@@ -157,28 +159,35 @@
 

 Requirements

 ============

-Taverna requires the Java Runtime Environment (JRE) version 5 or 6 from Sun.

-No other versions of Java are officially tested with Taverna. 

 

-*Note that future versions of Taverna will require Java 6.*

+Java

+-----

+Taverna requires the Java Runtime Environment (JRE) version 6 or later from

+Oracle.  No other versions of Java are officially tested with Taverna. 

 

-Mac OS X 10.5 (Leopard) and later should come with Java 5 or newer.  

-

-Windows users might need to download Java from http://java.com/

+Windows users might need to download Java from http://java.com/ 

 

 Linux users have different options to install Java depending on their Linux

 distribution. Some distributions, such as Ubuntu, might come with alternative

 open source implementations of Java, like Gnu GCJ and OpenJDK. We've identified

 some issues with these implementations, and recommend using the official Java

-implementation from Sun. 

+implementation from Sun/Oracle. 

 

-To download Sun Java 6 for Ubuntu, start a Terminal, and type the following:

-  sudo aptitude install sun-java6-jre

+To download Oracle Java 6 for Ubuntu, start a Terminal, and type the following:

+  sudo apt-get install sun-java6-jre

 

 and follow the instructions. You might also need to change the default Java

 implementation by running:

   sudo update-alternatives --config java

 

+To check your version of Java on the command line, try:

+

+  $ java -version

+  java version "1.6.0_22"

+  Java(TM) SE Runtime Environment (build 1.6.0_22-b04)

+  Java HotSpot(TM) 64-Bit Server VM (build 17.1-b03, mixed mode)

+

+

 Read http://www.taverna.org.uk/download/workbench/system-requirements/

 for more requirement details.

 

@@ -219,12 +228,9 @@
 your new Java installation.

 

 For Java 6, you can download the unlimited cryptography policy jar files from:

-  http://tinyurl.com/java6sec    -or- 

+  http://tinyurl.com/java6sec    -or-

   https://cds.sun.com/is-bin/INTERSHOP.enfinity/WFS/CDS-CDS_Developer-Site/en_US/-/USD/ViewProductDetail-Start?ProductRef=jce_policy-6-oth-JPR@CDS-CDS_Developer

 

-For Java 5, you can download the unlimited cryptography policy jar files from:

-  http://tinyurl.com/java5sec    -or- 

-  https://cds.sun.com/is-bin/INTERSHOP.enfinity/WFS/CDS-CDS_Developer-Site/en_US/-/USD/ViewProductDetail-Start?ProductRef=jce_policy-1.5.0-oth-JPR@CDS-CDS_Developer

 

 

 Advanced

@@ -240,13 +246,13 @@
 See:

 

     Windows XP: C:\Documents and settings\JohnDoe\

-                   Application Data\taverna-cmd-2.2.0\logs

+                   Application Data\taverna-cmd-2.3.0\logs

 

-    Vista/Windows 7: C:\Users\JohnDoe\AppData\Roaming\taverna-cmd-2.2.0\logs

+    Vista/Windows 7: C:\Users\JohnDoe\AppData\Roaming\taverna-cmd-2.3.0\logs

 

-    OS X: /Users/JohnDoe/Library/Application support/taverna-cmd-2.2.0/logs

+    OS X: /Users/JohnDoe/Library/Application support/taverna-cmd-2.3.0/logs

 

-    Linux: /home/johndoe/.taverna-cmd-2.2.0/logs

+    Linux: /home/johndoe/.taverna-cmd-2.3.0/logs

 

 Note that "Application data" and "AppData" are hidden folders in Windows.

 

@@ -266,3 +272,4 @@
 If you need to increase the available memory, edit "executeworkflow.sh" or

 "executeworkflow.bat" and replace "-Xmx300m" with say "-Xmx600m" to use

 600 MiB.

+