examples/sagemaker_example/sm_ops.py

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import argparse
import os
import time

import boto3
import numpy as np
import pandas as pd
import sagemaker
from sagemaker.sklearn.estimator import SKLearn
from sagemaker.sklearn.model import SKLearnModel

from data_preparation.data_preparation import (data_pipeline,
                                               DATASET_PUBLIC_URL,
                                               LABEL_COLUMN)
from data_preparation.data_uploader import SagemakerDataUploader
from data_train.train import feature_column_names

FRAMEWORK_VERSION = "0.23-1"

os.environ['AWS_DEFAULT_REGION'] = "us-east-1"
sm_boto3 = boto3.client("sagemaker")


def get_role():
    try:
        role = sagemaker.get_execution_role()
    except ValueError:
        role = os.getenv("SM_ROLE")
    return role


def sm_train(train_path, test_path, base_job_name="Liminal-sm-training-job", instance_type="ml.m5.large", n_jobs=1):
    sklearn_estimator = SKLearn(
        entry_point="data_train/train.py",
        source_dir="./",
        role=get_role(),
        instance_count=1,
        instance_type=instance_type,
        framework_version=FRAMEWORK_VERSION,
        base_job_name=base_job_name,
        hyperparameters={
            "n-jobs": n_jobs,
        }
    )
    sklearn_estimator.fit({"train": train_path, "test": test_path})
    artifact = sm_boto3.describe_training_job(
        TrainingJobName=sklearn_estimator.latest_training_job.name
    )["ModelArtifacts"]["S3ModelArtifacts"]

    print("Model artifact persisted at " + artifact)
    return artifact


def sm_deploy(artifact, model_name="Liminal-sm-demo-model", instance_type="ml.m5.large"):

    timestamp = time.strftime("-%Y-%m-%d-%H-%M-%S", time.gmtime())
    model = SKLearnModel(
        name=f"{model_name}-{timestamp}",
        entry_point="inference.py",
        model_data=artifact,
        role=get_role(),
        framework_version=FRAMEWORK_VERSION,
    )

    predictor = model.deploy(instance_type=instance_type, initial_instance_count=1, wait=True)
    return predictor


def sm_validate(predictor, test_path):
    if not test_path.startswith("s3"):
        test_path = f"s3://{test_path}"

    df = pd.read_csv(test_path)
    X_test_inference = df[feature_column_names].to_numpy()
    predictions = predictor.predict(data=X_test_inference)
    print("validating model")
    avg_err = np.average(np.abs(predictions - df[LABEL_COLUMN]))
    print(f"average abs error:{avg_err}")
    print(predictions)
    return avg_err


def sm_data_prep(input_uri, output_uri_base):
    return data_pipeline(input_uri=input_uri or DATASET_PUBLIC_URL, output_uri_base=output_uri_base,
                  data_uploader=SagemakerDataUploader())


def sm_main(args):
    test_path = 'sagemaker-us-east-1-468326661668/liminal-sm-example/test/diamonds_test.csv'
    train_path, test_path = sm_data_prep(args.input_uri, args.output_uri_base)
    artifact = sm_train(train_path, test_path,  base_job_name=args.base_job_name, instance_type=args.train_instance_type, n_jobs=args.n_jobs)
    #artifact = 's3://sagemaker-us-east-1-468326661668/Liminal-sm-training-job-2022-06-06-14-30-39-827/output/model.tar.gz'
    predictor = sm_deploy(artifact, model_name=args.model_name, instance_type=args.deploy_instance_type)
    #predictor =  Predictor(endpoint_name="Liminal-sm-demo-model-2022-06-06-14-35-48-079", serializer=NumpySerializer(), deserializer=NumpyDeserializer())
    sm_validate(predictor, test_path)


def create_sm_args_parser():
    parser = argparse.ArgumentParser()
    parser.add_argument("--input_uri",
                        default=DATASET_PUBLIC_URL)
    parser.add_argument("--output_uri_base",
                        default="liminal-sm-example")
    parser.add_argument("--base_job_name",
                        default="Liminal-sm-training-job")
    parser.add_argument("--train_instance_type", default="ml.m5.large")
    parser.add_argument("--n_jobs", default=1)
    parser.add_argument("--model_name",
                        default="Liminal-sm-demo-model")
    parser.add_argument("--deploy_instance_type", default="ml.m5.large")
    return parser


if __name__ == '__main__':
    parser = create_sm_args_parser()
    args = parser.parse_args()
    sm_main(args)