| /* |
| * The Computer Language Benchmark Games |
| * http://shootout.alioth.debian.org/ |
| * |
| * contributed by James Durbin |
| * based very closely on Ruby version by jose fco. gonzalez |
| */ |
| |
| def seq = new StringBuffer() |
| seq = System.in.readLines().join("\n") + "\n" |
| |
| initialLength = seq.length() |
| seq = (seq =~">.*\n|\n").replaceAll('') |
| codeLength = seq.length() |
| |
| [ |
| 'agggtaaa|tttaccct', |
| '[cgt]gggtaaa|tttaccc[acg]', |
| 'a[act]ggtaaa|tttacc[agt]t', |
| 'ag[act]gtaaa|tttac[agt]ct', |
| 'agg[act]taaa|ttta[agt]cct', |
| 'aggg[acg]aaa|ttt[cgt]ccct', |
| 'agggt[cgt]aa|tt[acg]accct', |
| 'agggta[cgt]a|t[acg]taccct', |
| 'agggtaa[cgt]|[acg]ttaccct' |
| ].each{ |
| println "$it " + (seq =~ it).getCount() |
| } |
| |
| [ |
| B: '(c|g|t)', |
| D: '(a|g|t)', |
| H: '(a|c|t)', |
| K: '(g|t)', |
| M: '(a|c)', |
| N: '(a|c|g|t)', |
| R: '(a|g)', |
| S: '(c|t)', |
| V: '(a|c|g)', |
| W: '(a|t)', |
| Y: '(c|t)' |
| ].each { f, r -> |
| seq = (seq =~ f).replaceAll(r) |
| } |
| |
| println '' |
| println initialLength |
| println codeLength |
| println seq.length() |
