Revert "remove shopt"
This reverts commit ee93f3fba4128d3039e2de75f163e651a6bd988d.
diff --git a/pge/src/main/resources/config/PgeConfig_MimePartitioner.xml b/pge/src/main/resources/config/PgeConfig_MimePartitioner.xml
index ce9d8a1..b1454ac 100644
--- a/pge/src/main/resources/config/PgeConfig_MimePartitioner.xml
+++ b/pge/src/main/resources/config/PgeConfig_MimePartitioner.xml
@@ -5,6 +5,7 @@
<!-- How to run the PGE -->
<exe dir="[JobDir]" shell="/bin/bash">
<cmd>export PATH=$HOME/bin/:${PATH}</cmd>
+ <cmd>shopt -s expand_aliases</cmd>
<cmd>echo "Creating working dirs"</cmd>
<cmd>mkdir [JobInputDir] ; mkdir [JobOutputDir]; mkdir [JobLogDir]</cmd>
<cmd>echo "Running MIME partitioner"</cmd>
diff --git a/pge/src/main/resources/config/PgeConfig_Rat.xml b/pge/src/main/resources/config/PgeConfig_Rat.xml
index 41f7755..12de6b9 100644
--- a/pge/src/main/resources/config/PgeConfig_Rat.xml
+++ b/pge/src/main/resources/config/PgeConfig_Rat.xml
@@ -10,7 +10,8 @@
<!-- How to run the PGE -->
<exe dir="[JobDir]" shell="/bin/bash">
<cmd>export PATH=$HOME/bin/:${PATH}</cmd>
- <cmd>rat() { java -jar [DRAT_HOME]/rat/lib/apache-rat-0.13.jar $1; }</cmd>
+ <cmd>shopt -s expand_aliases</cmd>
+ <cmd>alias rat="java -jar [DRAT_HOME]/rat/lib/apache-rat-0.13.jar"</cmd>
<cmd>echo "Creating working dirs"</cmd>
<cmd>mkdir -p [JobInputDir] ; mkdir -p [JobOutputDir]; mkdir -p [JobLogDir]</cmd>
<!-- <cmd>echo "Staging input to [JobInputDir]"</cmd>
diff --git a/pge/src/main/resources/config/PgeConfig_RatAggregator.xml b/pge/src/main/resources/config/PgeConfig_RatAggregator.xml
index 73c3768..4721fce 100644
--- a/pge/src/main/resources/config/PgeConfig_RatAggregator.xml
+++ b/pge/src/main/resources/config/PgeConfig_RatAggregator.xml
@@ -5,6 +5,7 @@
<!-- How to run the PGE -->
<exe dir="[JobDir]" shell="/bin/bash">
<cmd>export PATH=$HOME/bin/:${PATH}</cmd>
+ <cmd>shopt -s expand_aliases</cmd>
<cmd>echo "Creating working dirs"</cmd>
<cmd>mkdir [JobInputDir] ; mkdir [JobOutputDir]; mkdir [JobLogDir]</cmd>
<cmd>echo "Running RAT aggregator"</cmd>
