| /* |
| * Licensed to the Apache Software Foundation (ASF) under one |
| * or more contributor license agreements. See the NOTICE file |
| * distributed with this work for additional information |
| * regarding copyright ownership. The ASF licenses this file |
| * to you under the Apache License, Version 2.0 (the |
| * "License"); you may not use this file except in compliance |
| * with the License. You may obtain a copy of the License at |
| * |
| * http://www.apache.org/licenses/LICENSE-2.0 |
| * |
| * Unless required by applicable law or agreed to in writing, |
| * software distributed under the License is distributed on an |
| * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY |
| * KIND, either express or implied. See the License for the |
| * specific language governing permissions and limitations |
| * under the License. |
| */ |
| |
| package org.apache.datasketches.kll; |
| |
| import static java.lang.Math.max; |
| import static java.lang.Math.min; |
| import static org.apache.datasketches.kll.KllSketch.SketchStructure.UPDATABLE; |
| import static org.apache.datasketches.kll.KllSketch.SketchType.ITEMS_SKETCH; |
| import static org.apache.datasketches.quantilescommon.QuantilesUtil.equallyWeightedRanks; |
| |
| import java.lang.reflect.Array; |
| import java.util.Comparator; |
| import java.util.Objects; |
| |
| import org.apache.datasketches.common.ArrayOfItemsSerDe; |
| import org.apache.datasketches.common.SketchesArgumentException; |
| import org.apache.datasketches.memory.Memory; |
| import org.apache.datasketches.memory.MemoryRequestServer; |
| import org.apache.datasketches.memory.WritableMemory; |
| import org.apache.datasketches.quantilescommon.QuantileSearchCriteria; |
| import org.apache.datasketches.quantilescommon.QuantilesGenericAPI; |
| import org.apache.datasketches.quantilescommon.QuantilesGenericSketchIterator; |
| |
| /** |
| * This variation of the KllSketch implements generic data types. The user must provide |
| * a suitable implementation of the <i>java.lang.Comparator</i> as well as an implementation of |
| * the serializer / deserializer, <i>org.apache.datasketches.common.ArrayOfItemsSerDe</i>. |
| * @param <T> The sketch data type. |
| * @see org.apache.datasketches.kll.KllSketch |
| */ |
| @SuppressWarnings("unchecked") |
| public abstract class KllItemsSketch<T> extends KllSketch implements QuantilesGenericAPI<T> { |
| private KllItemsSketchSortedView<T> kllItemsSV = null; |
| final Comparator<? super T> comparator; |
| final ArrayOfItemsSerDe<T> serDe; |
| |
| KllItemsSketch( |
| final SketchStructure skStructure, |
| final Comparator<? super T> comparator, |
| final ArrayOfItemsSerDe<T> serDe) { |
| super(ITEMS_SKETCH, skStructure); |
| Objects.requireNonNull(comparator, "Comparator must not be null."); |
| Objects.requireNonNull(serDe, "SerDe must not be null."); |
| this.comparator = comparator; |
| this.serDe = serDe; |
| } |
| |
| //Factories for new heap instances. |
| |
| /** |
| * Create a new heap instance of this sketch with the default <em>k = 200</em>. |
| * The default <em>k</em> = 200 results in a normalized rank error of about |
| * 1.65%. Larger K will have smaller error but the sketch will be larger (and slower). |
| * @param comparator to compare items |
| * @param serDe Serializer / deserializer for an array of items, <i>T[]</i>. |
| * @param <T> The sketch data type. |
| * @return new KllItemsSketch on the Java heap. |
| */ |
| public static <T> KllItemsSketch<T> newHeapInstance( |
| final Comparator<? super T> comparator, |
| final ArrayOfItemsSerDe<T> serDe) { |
| final KllItemsSketch<T> itmSk = |
| new KllHeapItemsSketch<T>(DEFAULT_K, DEFAULT_M, comparator, serDe); |
| return itmSk; |
| } |
| |
| /** |
| * Create a new heap instance of this sketch with a given parameter <em>k</em>. |
| * <em>k</em> can be between DEFAULT_M and 65535, inclusive. |
| * The default <em>k</em> = 200 results in a normalized rank error of about |
| * 1.65%. Larger K will have smaller error but the sketch will be larger (and slower). |
| * @param k parameter that controls size of the sketch and accuracy of estimates. |
| * @param comparator to compare items |
| * @param serDe Serializer / deserializer for items of type <i>T</i> and <i>T[]</i>. |
| * @param <T> The sketch data type |
| * @return new KllItemsSketch on the heap. |
| */ |
| public static <T> KllItemsSketch<T> newHeapInstance( |
| final int k, |
| final Comparator<? super T> comparator, |
| final ArrayOfItemsSerDe<T> serDe) { |
| return new KllHeapItemsSketch<T>(k, DEFAULT_M, comparator, serDe); |
| } |
| |
| // Factory to create an heap instance from a Memory image |
| |
| /** |
| * Factory heapify takes a compact sketch image in Memory and instantiates an on-heap sketch. |
| * The resulting sketch will not retain any link to the source Memory. |
| * @param srcMem a compact Memory image of a sketch serialized by this sketch and of the same type of T. |
| * @param comparator to compare items |
| * @param serDe Serializer / deserializer for items of type <i>T</i> and <i>T[]</i>. |
| * @param <T> The sketch data type |
| * @return a heap-based sketch based on the given Memory. |
| */ |
| public static <T> KllItemsSketch<T> heapify( |
| final Memory srcMem, |
| final Comparator<? super T> comparator, |
| final ArrayOfItemsSerDe<T> serDe) { |
| return new KllHeapItemsSketch<T>(srcMem, comparator, serDe); |
| } |
| |
| //Factory to wrap a Read-Only Memory |
| |
| /** |
| * Constructs a thin wrapper on the heap around a Memory (or WritableMemory) already initialized with a |
| * validated sketch image of a type T consistent with the given comparator and serDe. |
| * A reference to the Memory is kept in the sketch and must remain in scope consistent |
| * with the temporal scope of this sketch. The amount of data kept on the heap is very small. |
| * All of the item data originally collected by the given Memory sketch object remains in the |
| * Memory object |
| * @param srcMem the Memory object that this sketch will wrap. |
| * @param comparator to compare items |
| * @param serDe Serializer / deserializer for items of type <i>T</i> and <i>T[]</i>. |
| * @param <T> The sketch data type |
| * @return a heap-base sketch that is a thin wrapper around the given srcMem. |
| */ |
| public static <T> KllItemsSketch<T> wrap( |
| final Memory srcMem, |
| final Comparator<? super T> comparator, |
| final ArrayOfItemsSerDe<T> serDe) { |
| final KllMemoryValidate memVal = new KllMemoryValidate(srcMem, SketchType.ITEMS_SKETCH, serDe); |
| return new KllDirectCompactItemsSketch<T>(memVal, comparator, serDe); |
| } |
| |
| //END of Constructors |
| |
| @Override |
| public double[] getCDF(final T[] splitPoints, final QuantileSearchCriteria searchCrit) { |
| if (isEmpty()) { throw new SketchesArgumentException(EMPTY_MSG); } |
| refreshSortedView(); |
| return kllItemsSV.getCDF(splitPoints, searchCrit); |
| } |
| |
| @Override |
| public GenericPartitionBoundaries<T> getPartitionBoundaries(final int numEquallyWeighted, |
| final QuantileSearchCriteria searchCrit) { |
| if (isEmpty()) { throw new SketchesArgumentException(EMPTY_MSG); } |
| final double[] ranks = equallyWeightedRanks(numEquallyWeighted); |
| final Object[] boundaries = getQuantiles(ranks, searchCrit); |
| boundaries[0] = getMinItem(); |
| boundaries[boundaries.length - 1] = getMaxItem(); |
| final GenericPartitionBoundaries<T> gpb = new GenericPartitionBoundaries<T>(); |
| gpb.N = this.getN(); |
| gpb.ranks = ranks; |
| gpb.boundaries = (T[])boundaries; |
| return gpb; |
| } |
| |
| @Override |
| public double[] getPMF(final T[] splitPoints, final QuantileSearchCriteria searchCrit) { |
| if (isEmpty()) { throw new SketchesArgumentException(EMPTY_MSG); } |
| refreshSortedView(); |
| return kllItemsSV.getPMF(splitPoints, searchCrit); |
| } |
| |
| @Override |
| public T getQuantile(final double rank, final QuantileSearchCriteria searchCrit) { |
| if (isEmpty()) { throw new SketchesArgumentException(EMPTY_MSG); } |
| refreshSortedView(); |
| return kllItemsSV.getQuantile(rank, searchCrit); |
| } |
| |
| @Override |
| public T[] getQuantiles(final double[] ranks, final QuantileSearchCriteria searchCrit) { |
| if (isEmpty()) { throw new SketchesArgumentException(EMPTY_MSG); } |
| refreshSortedView(); |
| final int len = ranks.length; |
| final T[] quantiles = (T[]) Array.newInstance(getMinItem().getClass(), len); |
| for (int i = 0; i < len; i++) { |
| quantiles[i] = kllItemsSV.getQuantile(ranks[i], searchCrit); |
| } |
| return quantiles; |
| } |
| |
| @Override |
| public T getQuantileLowerBound(final double rank) { |
| return getQuantile(max(0, rank - KllHelper.getNormalizedRankError(getMinK(), false))); |
| } |
| |
| @Override |
| public T getQuantileUpperBound(final double rank) { |
| return getQuantile(min(1.0, rank + KllHelper.getNormalizedRankError(getMinK(), false))); |
| } |
| |
| @Override |
| public double getRank(final T quantile, final QuantileSearchCriteria searchCrit) { |
| if (isEmpty()) { throw new SketchesArgumentException(EMPTY_MSG); } |
| refreshSortedView(); |
| return kllItemsSV.getRank(quantile, searchCrit); |
| } |
| |
| /** |
| * {@inheritDoc} |
| * The approximate probability that the true rank is within the confidence interval |
| * specified by the upper and lower rank bounds for this sketch is 0.99. |
| */ |
| @Override |
| public double getRankLowerBound(final double rank) { |
| return max(0.0, rank - KllHelper.getNormalizedRankError(getMinK(), false)); |
| } |
| |
| /** |
| * {@inheritDoc} |
| * The approximate probability that the true rank is within the confidence interval |
| * specified by the upper and lower rank bounds for this sketch is 0.99. |
| */ |
| @Override |
| public double getRankUpperBound(final double rank) { |
| return min(1.0, rank + KllHelper.getNormalizedRankError(getMinK(), false)); |
| } |
| |
| @Override |
| public double[] getRanks(final T[] quantiles, final QuantileSearchCriteria searchCrit) { |
| if (isEmpty()) { throw new SketchesArgumentException(EMPTY_MSG); } |
| refreshSortedView(); |
| final int len = quantiles.length; |
| final double[] ranks = new double[len]; |
| for (int i = 0; i < len; i++) { |
| ranks[i] = kllItemsSV.getRank(quantiles[i], searchCrit); |
| } |
| return ranks; |
| } |
| |
| @Override |
| public KllItemsSketchSortedView<T> getSortedView() { |
| refreshSortedView(); |
| return kllItemsSV; |
| } |
| |
| @Override |
| public QuantilesGenericSketchIterator<T> iterator() { |
| return new KllItemsSketchIterator<T>( |
| getTotalItemsArray(), getLevelsArray(SketchStructure.UPDATABLE), getNumLevels()); |
| } |
| |
| @Override |
| public final void merge(final KllSketch other) { |
| if (readOnly || sketchStructure != UPDATABLE) { throw new SketchesArgumentException(TGT_IS_READ_ONLY_MSG); } |
| final KllItemsSketch<T> othItmSk = (KllItemsSketch<T>)other; |
| if (othItmSk.isEmpty()) { return; } |
| KllItemsHelper.mergeItemImpl(this, othItmSk, comparator); |
| kllItemsSV = null; |
| } |
| |
| @Override |
| public void reset() { |
| if (readOnly) { throw new SketchesArgumentException(TGT_IS_READ_ONLY_MSG); } |
| final int k = getK(); |
| setN(0); |
| setMinK(k); |
| setNumLevels(1); |
| setLevelZeroSorted(false); |
| setLevelsArray(new int[] {k, k}); |
| setMinItem(null); |
| setMaxItem(null); |
| setItemsArray(new Object[k]); |
| } |
| |
| public byte[] toByteArray() { |
| return KllHelper.toByteArray(this, false); |
| } |
| |
| @Override |
| public void update(final T item) { |
| if (readOnly) { throw new SketchesArgumentException(TGT_IS_READ_ONLY_MSG); } |
| KllItemsHelper.updateItem(this, item, comparator); |
| kllItemsSV = null; |
| } |
| |
| //restricted |
| |
| @Override |
| MemoryRequestServer getMemoryRequestServer() { |
| //this is not used and must return a null |
| return null; |
| } |
| |
| @Override |
| abstract byte[] getMinMaxByteArr(); |
| |
| @Override |
| abstract int getMinMaxSizeBytes(); |
| |
| private final void refreshSortedView() { |
| kllItemsSV = (kllItemsSV == null) ? new KllItemsSketchSortedView<T>(this) : kllItemsSV; |
| } |
| |
| abstract T[] getRetainedItemsArray(); |
| |
| @Override |
| abstract byte[] getRetainedItemsByteArr(); |
| |
| @Override |
| abstract int getRetainedItemsSizeBytes(); |
| |
| //abstract Object[] getRetainedItemsArray(); |
| |
| @Override |
| ArrayOfItemsSerDe<T> getSerDe() { return serDe; } |
| |
| abstract T getSingleItem(); |
| |
| @Override |
| abstract byte[] getSingleItemByteArr(); |
| |
| @Override |
| abstract int getSingleItemSizeBytes(); |
| |
| /** |
| * @return a full array of items as if the sketch was in COMPACT_FULL or UPDATABLE format. |
| * This will include zeros and possibly some garbage items. |
| */ |
| abstract T[] getTotalItemsArray(); |
| |
| @Override |
| byte[] getTotalItemsByteArr() { |
| throw new SketchesArgumentException(UNSUPPORTED_MSG); |
| } |
| |
| @Override |
| int getTotalItemsNumBytes() { |
| throw new SketchesArgumentException(UNSUPPORTED_MSG); |
| } |
| |
| @Override |
| void incNumLevels() { |
| //this is not used and must be a no-op. |
| } |
| |
| abstract void setItemsArray(Object[] ItemsArr); |
| |
| abstract void setItemsArrayAt(int index, Object item); |
| |
| abstract void setMaxItem(Object item); |
| |
| abstract void setMinItem(Object item); |
| |
| @Override |
| void setNumLevels(final int numLevels) { |
| // this is not used and must be a no-op. |
| } |
| |
| @Override |
| void setWritableMemory(final WritableMemory wmem) { |
| throw new SketchesArgumentException(UNSUPPORTED_MSG + "Sketch not writable."); |
| } |
| |
| } |