Merge remote-tracking branch 'origin/main' into main
diff --git a/ctakes-pbj/src/user/resources/org/apache/ctakes/pbj/types/TypeSystem.xml b/ctakes-pbj/src/user/resources/org/apache/ctakes/pbj/types/TypeSystem.xml
index 829764e..b3fc587 100644
--- a/ctakes-pbj/src/user/resources/org/apache/ctakes/pbj/types/TypeSystem.xml
+++ b/ctakes-pbj/src/user/resources/org/apache/ctakes/pbj/types/TypeSystem.xml
@@ -20,6 +20,19 @@
under the License.
-->
+<!-- The more I look into the type system the less it makes sense.
+ Types that have slots that are populated with relations that refer back to the original object?
+ Why not just populate it with the other argument of the relation?
+ There are attributes and modifiers that are actually under-representations of full events/mentions.
+ e.g. medicationAllergy. Allergy is a "disorder". Why annotate a span twice?
+ e.g. "associatedSignSymptom" takes a ManifestationOf relation. It seems -obvious- this should be just a S/S type.
+ As that associatedSignSymptom, why is the slot for just 1? D/D can have multiple S/S.
+ Why do some Types use TimeMention to fill a slot when other same-level types use DateMention?
+ Not to mention that the naming is inconsistent.
+ Why is Medication Duration an attribute/modifier while all the other durations are temporalRelations?
+ The Type System was put together piecemeal over a long time, it is "living".
+ TODO: Add, Deprecate, migrate code, then get rid of -nonsense-.
+ -->
<typeSystemDescription xmlns="http://uima.apache.org/resourceSpecifier">
<name>org.apache.ctakes.typesystem.types.TypeSystem</name>
<description>This is a Apache cTAKES Common Type System for clinical NLP. It includes general types necessary to store annotations and interface with clinical element models</description>
@@ -654,7 +667,9 @@
<description>This is an Event from the UMLS semantic group of Chemicals and Drugs, pruned by RxNORM source. Based on generic Clinical Element Models (CEMs)</description>
<supertypeName>org.apache.ctakes.typesystem.type.refsem.Event</supertypeName>
<features>
- <featureDescription>
+ <!-- features named Medication* are Deprecated in v5.
+ Please migrate all references to non-Medication specific types. -->
+ <featureDescription>
<name>medicationFrequency</name>
<description/>
<rangeTypeName>org.apache.ctakes.typesystem.type.refsem.MedicationFrequency</rangeTypeName>
@@ -704,6 +719,48 @@
<description/>
<rangeTypeName>org.apache.ctakes.typesystem.type.relation.TemporalRelation</rangeTypeName>
</featureDescription>
+ <!-- New in ctakes 5 -->
+ <featureDescription>
+ <name>dosageCount</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.DosageCount</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>dose</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.Dose</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>totalDose</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.TotalDose</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>form</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.Form</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>route</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.Route</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>frequency</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.Frequency</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>duration</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.Duration</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>statusChange</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.StatusChange</rangeTypeName>
+ </featureDescription>
+
</features>
</typeDescription>
<typeDescription>
@@ -731,11 +788,12 @@
<description/>
<rangeTypeName>org.apache.ctakes.typesystem.type.refsem.ProcedureDevice</rangeTypeName>
</featureDescription>
- <featureDescription>
- <name>duration</name>
- <description/>
- <rangeTypeName>org.apache.ctakes.typesystem.type.relation.TemporalRelation</rangeTypeName>
- </featureDescription>
+<!-- <featureDescription>-->
+<!-- Changed to Duration Attribute. I don't know why this was special as a relation. This procedure would be an arg. -->
+<!-- <name>duration</name>-->
+<!-- <description/>-->
+<!-- <rangeTypeName>org.apache.ctakes.typesystem.type.relation.TemporalRelation</rangeTypeName>-->
+<!-- </featureDescription>-->
<featureDescription>
<name>endTime</name>
<description/>
@@ -756,6 +814,53 @@
<description/>
<rangeTypeName>org.apache.ctakes.typesystem.type.relation.TemporalRelation</rangeTypeName>
</featureDescription>
+ <!-- New in ctakes 5 -->
+ <featureDescription>
+ <name>anatomicalSite</name>
+ <description>Anatomical site replaces the circular bodyLocation relation plus bodyLaterality and bodySide.</description>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.AnatomicalSite</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>dosageCount</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.DosageCount</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>dose</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.Dose</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>totalDose</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.TotalDose</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>form</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.Form</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>route</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.Route</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>frequency</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.Frequency</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>duration</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.Duration</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>statusChange</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.StatusChange</rangeTypeName>
+ </featureDescription>
+
</features>
</typeDescription>
<typeDescription>
@@ -1786,6 +1891,9 @@
</featureDescription>
</features>
</typeDescription>
+
+ <!-- MedicationEventMention is Deprecated in v5.
+ Please migrate all references to Medication type. If it has a span it should be a MedicationMention. -->
<typeDescription>
<name>org.apache.ctakes.typesystem.type.textsem.MedicationEventMention</name>
<description>Deprecated. As of cTAKEs 3.1, see org.apache.ctakes.typesystem.type.textsem.MedicationMention.</description>
@@ -1838,7 +1946,10 @@
</featureDescription>
</features>
</typeDescription>
- <typeDescription>
+ <!-- MedicationEventMention is Deprecated in v5.
+ Please migrate all references to Medication type. If it has a span it should be a MedicationMention. -->
+
+ <typeDescription>
<name>org.apache.ctakes.typesystem.type.textsem.TimeMention</name>
<description>A text string (IdentifiedAnnotation) that refers to a Time (i.e., TIMEX3).</description>
<supertypeName>org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation</supertypeName>
@@ -2220,10 +2331,13 @@
<supertypeName>org.apache.ctakes.typesystem.type.textsem.EventMention</supertypeName>
<features>
<featureDescription>
+ <!-- Is medicationAllergy a necessary modifier? Allergy is a disease/disorder. -->
<name>medicationAllergy</name>
<description/>
<rangeTypeName>org.apache.ctakes.typesystem.type.textsem.MedicationAllergyModifier</rangeTypeName>
</featureDescription>
+ <!-- features named Medication* are Deprecated in v5.
+ Please migrate all references to non-Medication specific types. -->
<featureDescription>
<name>medicationFrequency</name>
<description/>
@@ -2274,6 +2388,47 @@
<description/>
<rangeTypeName>org.apache.ctakes.typesystem.type.relation.TemporalTextRelation</rangeTypeName>
</featureDescription>
+ <!-- New in ctakes 5 -->
+ <featureDescription>
+ <name>dosageCount</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.textsem.DosageCountModifier</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>dose</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.textsem.DoseModifier</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>totalDose</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.textsem.TotalDoseModifier</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>form</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.textsem.FormModifier</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>route</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.textsem.RouteModifier</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>frequency</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.textsem.FrequencyModifier</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>duration</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.textsem.DurationModifier</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>statusChange</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.textsem.StatusChangeModifier</rangeTypeName>
+ </featureDescription>
</features>
</typeDescription>
<typeDescription>
@@ -2296,16 +2451,17 @@
<description/>
<rangeTypeName>org.apache.ctakes.typesystem.type.relation.LocationOfTextRelation</rangeTypeName>
</featureDescription>
- <featureDescription>
+ <featureDescription>
<name>procedureDevice</name>
<description/>
<rangeTypeName>org.apache.ctakes.typesystem.type.textsem.ProcedureDeviceModifier</rangeTypeName>
</featureDescription>
- <featureDescription>
- <name>duration</name>
- <description/>
- <rangeTypeName>org.apache.ctakes.typesystem.type.relation.TemporalTextRelation</rangeTypeName>
- </featureDescription>
+<!-- <featureDescription>-->
+<!-- Changed to Duration Modifier. I don't know why this was special as a relation. This procedure would be an arg. -->
+<!-- <name>duration</name>-->
+<!-- <description/>-->
+<!-- <rangeTypeName>org.apache.ctakes.typesystem.type.relation.TemporalTextRelation</rangeTypeName>-->
+<!-- </featureDescription>-->
<featureDescription>
<name>endTime</name>
<description/>
@@ -2326,6 +2482,52 @@
<description/>
<rangeTypeName>org.apache.ctakes.typesystem.type.relation.TemporalTextRelation</rangeTypeName>
</featureDescription>
+ <!-- New in ctakes 5 -->
+ <featureDescription>
+ <name>anatomicalSite</name>
+ <description>Anatomical site mention replaces the circular bodyLocation relation plus bodyLaterality and bodySide.</description>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>dosageCount</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.textsem.DosageCountModifier</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>dose</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.textsem.DoseModifier</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>totalDose</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.textsem.TotalDoseModifier</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>form</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.textsem.FormModifier</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>route</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.textsem.RouteModifier</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>frequency</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.textsem.FrequencyModifier</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>duration</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.textsem.DurationModifier</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>statusChange</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.textsem.StatusChangeModifier</rangeTypeName>
+ </featureDescription>
</features>
</typeDescription>
<typeDescription>
@@ -2523,92 +2725,182 @@
</featureDescription>
</features>
</typeDescription>
+
+ <!-- Medication attributes do not really account for things like:
+ "1.5 pills in the morning and 1 pill in the evening."
+ There are two dosageCounts: 1.5 and 1. The frequency is 2 / day.
+ Should it be split into 2 medications? 1.5 pill x 1 / day and 1 pill x 1 / day ? -->
+
+ <!-- Replacements for Medication*** attribute types. They also apply to Procedures. -->
+ <!-- One 10 mg Pill by Mouth 4 times per day for one month starting today. -->
+ <!-- [dosage count] [dose] [form] [route] [frequency] [duration] [status change] -->
<typeDescription>
- <name>org.apache.ctakes.typesystem.type.refsem.Regimen</name>
- <description>A Therapeutic or Preventive Procedure that consists of individual notable events. No Text Span.</description>
- <supertypeName>org.apache.ctakes.typesystem.type.refsem.Event</supertypeName>
+ <!-- !! Note that the original attribute name "Dosage" can be confusing !!
+ Dosage is actually the whole Dose, Frequency, Duration, etc. expression. So this is really a "count of Dosages." -->
+ <name>org.apache.ctakes.typesystem.type.refsem.DosageCount</name>
+ <description>How many Medication or Procedure Dosage expressions. e.g. "one" in "one 5 mg tablet twice-a-day for 2 weeks"</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.refsem.Attribute</supertypeName>
<features>
<featureDescription>
- <name>startTime</name>
+ <name>value</name>
<description/>
- <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.Time</rangeTypeName>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <!-- While this is the "medication strength" per common language, according to the AMA this is "Dose". -->
+ <name>org.apache.ctakes.typesystem.type.refsem.Dose</name>
+ <description>Dose indicates the 'strength' number and unit of a medication or procedure. e.g. 5 mg, 100 cGy, etc.</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.refsem.Attribute</supertypeName>
+ <features>
+ <featureDescription>
+ <name>number</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
</featureDescription>
<featureDescription>
- <name>endTime</name>
+ <name>unit</name>
+ <description>the unit of dose measurement</description>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <!-- While this is the "medication strength" per common language, according to the AMA this is "Dose". -->
+ <name>org.apache.ctakes.typesystem.type.refsem.TotalDose</name>
+ <description>Indicates the total dose number and unit of a medication or procedure. e.g. Two 5mg tabs = 10mg.</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.refsem.Attribute</supertypeName>
+ <features>
+ <featureDescription>
+ <name>number</name>
<description/>
- <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.Time</rangeTypeName>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
</featureDescription>
<featureDescription>
- <name>duration</name>
+ <name>unit</name>
+ <description>the unit of dose measurement</description>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.refsem.Form</name>
+ <description>Form of a medication or procedure. e.g. tablet, brachytherapy, etc.</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.refsem.Attribute</supertypeName>
+ <features>
+ <featureDescription>
+ <name>value</name>
<description/>
- <rangeTypeName>org.apache.ctakes.typesystem.type.relation.TemporalRelation</rangeTypeName>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.refsem.Route</name>
+ <description>Means by which the medication or procedure was taken or administered. e.g. Oral, beam path, etc.</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.refsem.Attribute</supertypeName>
+ <features>
+ <featureDescription>
+ <name>value</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.refsem.Frequency</name>
+ <description>How often a Medication or Procedure should occur. e.g., BID or b.i.d. or "twice-a-day" would have a number=2 and unit=day.</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.refsem.Attribute</supertypeName>
+ <features>
+ <featureDescription>
+ <name>number</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
</featureDescription>
<featureDescription>
- <name>relativeTemporalContext</name>
- <description/>
- <rangeTypeName>org.apache.ctakes.typesystem.type.relation.TemporalRelation</rangeTypeName>
+ <name>unit</name>
+ <description>The periodic unit used, e.g day, month, hour, etc.</description>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
</featureDescription>
- <!-- Arrays for Procedures (e.g. RadioTherapy) and Medications (e.g. ChemoTherapy) -->
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.refsem.Duration</name>
+ <description>Amount of time over which a medication or procedure should occur. e.g. 2 weeks</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.refsem.Attribute</supertypeName>
+ <features>
<featureDescription>
- <name>procedures</name>
+ <name>number</name>
<description/>
- <rangeTypeName>uima.cas.FSArray</rangeTypeName>
- <elementType>org.apache.ctakes.typesystem.type.refsem.Procedure</elementType>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
</featureDescription>
<featureDescription>
- <name>medications</name>
- <description/>
- <rangeTypeName>uima.cas.FSArray</rangeTypeName>
- <elementType>org.apache.ctakes.typesystem.type.refsem.Medication</elementType>
+ <name>unit</name>
+ <description>the unit of time measurement. e.g day, month, hour, etc.</description>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.refsem.StatusChange</name>
+ <description>Does this Medication or Procedure represent a change in state. e.g. start of use, increase of strength, no change.</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.refsem.Attribute</supertypeName>
+ <features>
+ <!-- !! Change can occur for more than one attribute. e.g. strength increase while frequency decrease. -->
+ <featureDescription>
+ <name>value</name>
+ <description>Indicates the change status of 'stop', 'start', 'increase', 'decrease', 'noChange', 'boost'.</description>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
</featureDescription>
</features>
</typeDescription>
+ <!-- Replacements for Medication*** modifier types. They also apply to Procedures. -->
+ <!-- One 10 mg Pill by Mouth 4 times per day for one month starting today. -->
+ <!-- [dosage count] [dose] [form] [route] [frequency] [duration] [status change] -->
<typeDescription>
- <name>org.apache.ctakes.typesystem.type.textsem.RegimenMention</name>
- <description>A Therapeutic or Preventive Procedure that consists of individual notable events. Text Span.</description>
- <supertypeName>org.apache.ctakes.typesystem.type.textsem.EventMention</supertypeName>
- <features>
- <!-- Temporal information common to all Regimen types -->
- <featureDescription>
- <name>startDate</name>
- <description/>
- <rangeTypeName>org.apache.ctakes.typesystem.type.textsem.TimeMention</rangeTypeName>
- </featureDescription>
- <featureDescription>
- <name>endDate</name>
- <description/>
- <rangeTypeName>org.apache.ctakes.typesystem.type.textsem.TimeMention</rangeTypeName>
- </featureDescription>
- <featureDescription>
- <name>duration</name>
- <description/>
- <rangeTypeName>org.apache.ctakes.typesystem.type.relation.TemporalTextRelation</rangeTypeName>
- </featureDescription>
- <featureDescription>
- <name>frequency</name>
- <description/>
- <rangeTypeName>org.apache.ctakes.typesystem.type.relation.TemporalTextRelation</rangeTypeName>
- </featureDescription>
- <featureDescription>
- <name>relativeTemporalContext</name>
- <description/>
- <rangeTypeName>org.apache.ctakes.typesystem.type.relation.TemporalTextRelation</rangeTypeName>
- </featureDescription>
- <!-- Arrays for Procedures (e.g. RadioTherapy) and Medications (e.g. ChemoTherapy) -->
- <featureDescription>
- <name>procedures</name>
- <description/>
- <rangeTypeName>uima.cas.FSArray</rangeTypeName>
- <elementType>org.apache.ctakes.typesystem.type.textsem.ProcedureMention</elementType>
- </featureDescription>
- <featureDescription>
- <name>medications</name>
- <description/>
- <rangeTypeName>uima.cas.FSArray</rangeTypeName>
- <elementType>org.apache.ctakes.typesystem.type.textsem.MedicationMention</elementType>
- </featureDescription>
- </features>
+ <!-- !! Note that the original attribute name "Dosage" can be confusing !!
+ Dosage is actually the whole Dose, Frequency, Duration, etc. expression. So this is really a "count of Dosages." -->
+ <name>org.apache.ctakes.typesystem.type.textsem.DosageCountModifier</name>
+ <description>How many Medication or Procedure Dosage expressions. e.g. "one" in "one 5 mg tablet twice-a-day for 2 weeks"</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.textsem.Modifier</supertypeName>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.textsem.DoseModifier</name>
+ <description>Dose indicates the 'strength' number and unit of a medication or procedure. e.g. 5 mg, 100 cGy, etc.</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.textsem.Modifier</supertypeName>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.textsem.TotalDoseModifier</name>
+ <description>Indicates the total dose number and unit of a medication or procedure. e.g. Two 5mg tabs = 10mg.</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.textsem.Modifier</supertypeName>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.textsem.FormModifier</name>
+ <description>Form of a medication or procedure. e.g. tablet, brachytherapy, etc.</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.textsem.Modifier</supertypeName>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.textsem.RouteModifier</name>
+ <description>Means by which the medication or procedure was taken or administered. e.g. Oral, beam path, etc.</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.textsem.Modifier</supertypeName>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.textsem.FrequencyModifier</name>
+ <description>How often a Medication or Procedure should occur. e.g., BID or b.i.d. or "twice-a-day" would have a number=2 and unit=day.</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.textsem.Modifier</supertypeName>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.textsem.DurationModifier</name>
+ <description>Amount of time over which a medication or procedure should occur. e.g. 2 weeks</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.textsem.Modifier</supertypeName>
+ </typeDescription>
+ <typeDescription>
+ <!-- !! Change can occur for more than one attribute. e.g. strength increase while frequency decrease. -->
+ <name>org.apache.ctakes.typesystem.type.textsem.StatusChangeModifier</name>
+ <description>Does this Medication or Procedure represent a change in state. e.g. start of use, increase of strength, no change.</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.textsem.Modifier</supertypeName>
</typeDescription>
</types>
