| <?xml version="1.0" encoding="UTF-8"?> |
| <!-- |
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| Licensed to the Apache Software Foundation (ASF) under one |
| or more contributor license agreements. See the NOTICE file |
| distributed with this work for additional information |
| regarding copyright ownership. The ASF licenses this file |
| to you under the Apache License, Version 2.0 (the |
| "License"); you may not use this file except in compliance |
| with the License. You may obtain a copy of the License at |
| |
| http://www.apache.org/licenses/LICENSE-2.0 |
| |
| Unless required by applicable law or agreed to in writing, |
| software distributed under the License is distributed on an |
| "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY |
| KIND, either express or implied. See the License for the |
| specific language governing permissions and limitations |
| under the License. |
| |
| --> |
| <analysisEngineDescription xmlns="http://uima.apache.org/resourceSpecifier"> |
| <frameworkImplementation>org.apache.uima.java</frameworkImplementation> |
| <primitive>false</primitive> |
| <delegateAnalysisEngineSpecifiers> |
| <delegateAnalysisEngine key="LookupWindowAnnotator"> |
| <import location="../../../ctakes-clinical-pipeline/desc/analysis_engine/LookupWindowAnnotator.xml"/> |
| </delegateAnalysisEngine> |
| <delegateAnalysisEngine key="SimpleSegmentAnnotator"> |
| <import location="../../../ctakes-clinical-pipeline/desc/analysis_engine/SimpleSegmentAnnotator.xml"/> |
| </delegateAnalysisEngine> |
| <delegateAnalysisEngine key="Chunker"> |
| <import location="../../../ctakes-chunker/desc/Chunker.xml"/> |
| </delegateAnalysisEngine> |
| <delegateAnalysisEngine key="ExtractionPrepAnnotator"> |
| <import location="../../../ctakes-clinical-pipeline/desc/analysis_engine/ExtractionPrepAnnotator.xml"/> |
| </delegateAnalysisEngine> |
| <delegateAnalysisEngine key="NegationAnnotator"> |
| <import location="../../../ctakes-ne-contexts/desc/NegationAnnotator.xml"/> |
| </delegateAnalysisEngine> |
| <delegateAnalysisEngine key="SentenceDetectorAnnotator"> |
| <import location="../../../ctakes-core/desc/analysis_engine/SentenceDetectorAnnotator.xml"/> |
| </delegateAnalysisEngine> |
| <delegateAnalysisEngine key="TokenizerAnnotator"> |
| <import location="../../../ctakes-core/desc/analysis_engine/TokenizerAnnotator.xml"/> |
| </delegateAnalysisEngine> |
| <delegateAnalysisEngine key="POSTagger"> |
| <import location="../../../ctakes-pos-tagger/desc/POSTagger.xml"/> |
| </delegateAnalysisEngine> |
| <delegateAnalysisEngine key="StatusAnnotator"> |
| <import location="../../../ctakes-ne-contexts/desc/StatusAnnotator.xml"/> |
| </delegateAnalysisEngine> |
| <delegateAnalysisEngine key="AdjustNounPhraseToIncludeFollowingNP"> |
| <import location="../../../ctakes-chunker/desc/AdjustNounPhraseToIncludeFollowingNP.xml"/> |
| </delegateAnalysisEngine> |
| <delegateAnalysisEngine key="AdjustNounPhraseToIncludeFollowingPPNP"> |
| <import location="../../../ctakes-chunker/desc/AdjustNounPhraseToIncludeFollowingPPNP.xml"/> |
| </delegateAnalysisEngine> |
| <!-- |
| <delegateAnalysisEngine key="LvgAnnotator"> |
| <import location="../../../ctakes-lvg/desc/analysis_engine/LvgAnnotator.xml"/> |
| </delegateAnalysisEngine> |
| --> |
| <delegateAnalysisEngine key="ContextDependentTokenizerAnnotator"> |
| <import location="../../../ctakes-context-tokenizer/desc/analysis_engine/ContextDependentTokenizerAnnotator.xml"/> |
| </delegateAnalysisEngine> |
| <delegateAnalysisEngine key="DictionaryLookupAnnotator"> |
| <import location="../../../ctakes-dictionary-lookup-fast/desc/analysis_engine/UmlsLookupAnnotator.xml"/> |
| </delegateAnalysisEngine> |
| <delegateAnalysisEngine key="GenericCleartkAnalysisEngine"> |
| <import location="../../../ctakes-assertion/desc/analysis_engine/GenericCleartkAnalysisEngine.xml"/> |
| </delegateAnalysisEngine> |
| |
| <delegateAnalysisEngine key="HistoryCleartkAnalysisEngine"> |
| <import location="../../../ctakes-assertion/desc/analysis_engine/HistoryCleartkAnalysisEngine.xml"/> |
| </delegateAnalysisEngine> |
| <delegateAnalysisEngine key="PolarityCleartkAnalysisEngine"> |
| <import location="../../../ctakes-assertion/desc/analysis_engine/PolarityCleartkAnalysisEngine.xml"/> |
| </delegateAnalysisEngine> |
| <delegateAnalysisEngine key="SubjectCleartkAnalysisEngine"> |
| <import location="../../../ctakes-assertion/desc/analysis_engine/SubjectCleartkAnalysisEngine.xml"/> |
| </delegateAnalysisEngine> |
| <delegateAnalysisEngine key="UncertaintyCleartkAnalysisEngine"> |
| <import location="../../../ctakes-assertion/desc/analysis_engine/UncertaintyCleartkAnalysisEngine.xml"/> |
| </delegateAnalysisEngine> |
| <delegateAnalysisEngine key="DependencyParser"> |
| <import location="../../../ctakes-dependency-parser/desc/analysis_engine/ClearNLPDependencyParserAE.xml" /> |
| </delegateAnalysisEngine> |
| </delegateAnalysisEngineSpecifiers> |
| <analysisEngineMetaData> |
| <name>AggregatePlaintextProcessor</name> |
| <description>Runs the complete pipeline for annotating clinical documents in plain text format. |
| Includes adjusting NP chunks to include NP NP and NP PP NP.</description> |
| <version></version> |
| <vendor></vendor> |
| <configurationParameters searchStrategy="language_fallback"> |
| <configurationParameter> |
| <name>SegmentID</name> |
| <description></description> |
| <type>String</type> |
| <multiValued>false</multiValued> |
| <mandatory>false</mandatory> |
| <overrides> |
| <parameter>SimpleSegmentAnnotator/SegmentID</parameter> |
| </overrides> |
| </configurationParameter> |
| <configurationParameter> |
| <name>ChunkCreatorClass</name> |
| <type>String</type> |
| <multiValued>false</multiValued> |
| <mandatory>true</mandatory> |
| <overrides> |
| <parameter>Chunker/ChunkCreatorClass</parameter> |
| </overrides> |
| </configurationParameter> |
| </configurationParameters> |
| <configurationParameterSettings> |
| <nameValuePair> |
| <name>ChunkCreatorClass</name> |
| <value> |
| <string>org.apache.ctakes.chunker.ae.PhraseTypeChunkCreator</string> |
| </value> |
| </nameValuePair> |
| </configurationParameterSettings> |
| <flowConstraints> |
| <fixedFlow> |
| <node>SimpleSegmentAnnotator</node> |
| <node>SentenceDetectorAnnotator</node> |
| <node>TokenizerAnnotator</node> |
| <!-- |
| <node>LvgAnnotator</node> |
| --> |
| <node>ContextDependentTokenizerAnnotator</node> |
| <node>POSTagger</node> |
| <node>Chunker</node> |
| <node>AdjustNounPhraseToIncludeFollowingNP</node> |
| <node>AdjustNounPhraseToIncludeFollowingPPNP</node> |
| <node>LookupWindowAnnotator</node> |
| <node>DictionaryLookupAnnotator</node> |
| <node>DependencyParser</node> |
| <node>GenericCleartkAnalysisEngine</node> |
| <node>HistoryCleartkAnalysisEngine</node> |
| <node>PolarityCleartkAnalysisEngine</node> |
| <node>SubjectCleartkAnalysisEngine</node> |
| <node>UncertaintyCleartkAnalysisEngine</node> |
| <node>ExtractionPrepAnnotator</node> |
| </fixedFlow> |
| </flowConstraints> |
| <typePriorities> |
| <name>Ordering</name> |
| <description>For subiterator</description> |
| <version>1.0</version> |
| <priorityList> |
| <type>org.apache.ctakes.typesystem.type.textspan.Segment</type> |
| <type>org.apache.ctakes.typesystem.type.textspan.Sentence</type> |
| <type>org.apache.ctakes.typesystem.type.syntax.BaseToken</type> |
| </priorityList> |
| <priorityList> |
| <type>org.apache.ctakes.typesystem.type.textspan.Sentence</type> |
| <type>org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation</type> |
| </priorityList> |
| </typePriorities> |
| <fsIndexCollection/> |
| <capabilities> |
| <capability> |
| <inputs/> |
| <outputs> |
| <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.NewlineToken</type> |
| <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation</type> |
| <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.WordToken</type> |
| <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.VP</type> |
| <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.refsem.UmlsConcept</type> |
| <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.UCP</type> |
| <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.textsem.TimeAnnotation</type> |
| <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.SymbolToken</type> |
| <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.textspan.Sentence</type> |
| <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.textspanSegment</type> |
| <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.SBAR</type> |
| <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.textsem.RomanNumeralAnnotation</type> |
| <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.textsem.RangeAnnotation</type> |
| <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.PunctuationToken</type> |
| <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.Property</type> |
| <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.Properties</type> |
| <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.textsem.PersonTitleAnnotation</type> |
| <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.PRT</type> |
| <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.PP</type> |
| <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.OntologyConcept</type> |
| <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.NumToken</type> |
| <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.</type> |
| <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation</type> |
| <type allAnnotatorFeatures="true">edu.mayo.bmi.uima.lookup.type.LookupWindowAnnotation</type> |
| <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.Lemma</type> |
| <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.LST</type> |
| <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.INTJ</type> |
| <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.textsem.FractionAnnotation</type> |
| <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.structured.DocumentID</type> |
| <type allAnnotatorFeatures="true">uima.tcas.DocumentAnnotation</type> |
| <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.textsem.DateAnnotation</type> |
| <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.CopySrcAnnotation</type> |
| <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.CopyDestAnnotation</type> |
| <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.ContractionToken</type> |
| <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.textsem.ContextAnnotation</type> |
| <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.Chunk</type> |
| <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.CONJP</type> |
| <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.BaseToken</type> |
| <type allAnnotatorFeatures="true">uima.cas.AnnotationBase</type> |
| <type allAnnotatorFeatures="true">uima.tcas.Annotation</type> |
| <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.ADVP</type> |
| <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.ADJP</type> |
| </outputs> |
| <languagesSupported/> |
| </capability> |
| </capabilities> |
| <operationalProperties> |
| <modifiesCas>true</modifiesCas> |
| <multipleDeploymentAllowed>true</multipleDeploymentAllowed> |
| <outputsNewCASes>false</outputsNewCASes> |
| </operationalProperties> |
| </analysisEngineMetaData> |
| <resourceManagerConfiguration/> |
| </analysisEngineDescription> |
