ctakes-drug-ner/desc/cas_consumer/DrugNERCasConsumer.xml

<?xml version="1.0" encoding="UTF-8"?>
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<casConsumerDescription xmlns="http://uima.apache.org/resourceSpecifier">
  <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
  <implementationName>org.apache.ctakes.drugner.cc.ConsumeNamedEntityRecordModel</implementationName>
  <processingResourceMetaData>
    <name>ConsumeNamedEntityRecord</name>
    <description>Processes a given CAS to identify predetermined list of NER items</description>
    <version>1.0</version>
    <vendor>Mayo</vendor>
    <configurationParameters>
      <configurationParameter>
        <name>OutputDirectory</name>
        <description>Directory where the cvs file will be written</description>
        <type>String</type>
        <multiValued>false</multiValued>
        <mandatory>true</mandatory>
      </configurationParameter>
      <configurationParameter>
        <name>useMedicationSectionOnly</name>
        <description>Indicates if only medication related sections should be included in the drug NE extraction</description>
        <type>Boolean</type>
        <multiValued>false</multiValued>
        <mandatory>true</mandatory>
      </configurationParameter>
      <configurationParameter>
        <name>locationForClinicRcdInput</name>
        <description>Optional.  Location for file containing patient clinics and possible anchor date value</description>
        <type>String</type>
        <multiValued>false</multiValued>
        <mandatory>false</mandatory>
      </configurationParameter>
      <configurationParameter>
        <name>filterGroupDrugs</name>
        <description>Optional.  List of drugs to be filtered when discovered.</description>
        <type>String</type>
        <multiValued>false</multiValued>
        <mandatory>false</mandatory>
      </configurationParameter>
      <configurationParameter>
        <name>listMedicationSection</name>
        <description>Optional. List of medications sections the include list drug NE.</description>
        <type>String</type>
        <multiValued>false</multiValued>
        <mandatory>false</mandatory>
      </configurationParameter>
    </configurationParameters>
    <configurationParameterSettings>
      <nameValuePair>
        <name>OutputDirectory</name>
        <value>
          <string>testdata/drugnertest/testoutput/xcas</string>
        </value>
      </nameValuePair>
      <nameValuePair>
        <name>useMedicationSectionOnly</name>
        <value>
          <boolean>false</boolean>
        </value>
      </nameValuePair>
      <nameValuePair>
        <name>listMedicationSection</name>
        <value>
          <string>20104|20133|20147</string>
        </value>
      </nameValuePair>
    </configurationParameterSettings>
    <typeSystemDescription>
    </typeSystemDescription>
    <typePriorities/>
    <fsIndexCollection/>
    <capabilities>
      <capability>
        <inputs>
          <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.textspan.Segment</type>
        </inputs>
        <outputs/>
        <inputSofas>
          <sofaName>plaintext</sofaName>
        </inputSofas>
        <languagesSupported/>
      </capability>
    </capabilities>
    <operationalProperties>
      <modifiesCas>false</modifiesCas>
      <multipleDeploymentAllowed>false</multipleDeploymentAllowed>
      <outputsNewCASes>false</outputsNewCASes>
    </operationalProperties>
  </processingResourceMetaData>
  <resourceManagerConfiguration/>
</casConsumerDescription>