ctakes-drug-ner/desc/analysis_engine/DrugMentionAnnotator.xml

<?xml version="1.0" encoding="UTF-8"?>
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<taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
  <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
  <primitive>true</primitive>
  <annotatorImplementationName>org.apache.ctakes.drugner.ae.DrugMentionAnnotator</annotatorImplementationName>
  <analysisEngineMetaData>
    <name>DrugMentionAnnotator</name>
    <description>Generates DrugMentions and related attributes such as strength, dosage, frequency, etc.</description>
    <version>1.0</version>
    <vendor>Mayo</vendor>
    <configurationParameters>
      <configurationParameter>
        <name>medicationRelatedSection</name>
        <description>Section ids that need to be considered when generating the DrugMentionAnnotation</description>
        <type>String</type>
        <multiValued>true</multiValued>
        <mandatory>false</mandatory>
      </configurationParameter>
      <configurationParameter>
        <name>DISTANCE</name>
        <description>Number of annotation types to be used as window.  Default is '1'</description>
        <type>String</type>
        <multiValued>false</multiValued>
        <mandatory>false</mandatory>
      </configurationParameter>
      <configurationParameter>
        <name>DISTANCE_ANN_TYPE</name>
        <description>Type annotation annotion used for window.</description>
        <type>String</type>
        <multiValued>false</multiValued>
        <mandatory>false</mandatory>
      </configurationParameter>
      <configurationParameter>
        <name>STATUS_BOUNDARY_ANN_TYPE</name>
        <type>String</type>
        <multiValued>false</multiValued>
        <mandatory>false</mandatory>
      </configurationParameter>
    </configurationParameters>
    <configurationParameterSettings>
      <nameValuePair>
        <name>medicationRelatedSection</name>
        <value>
          <array>
            <string>20101</string>
            <string>20102</string>
            <string>20103</string>
            <string>20104</string>
            <string>20105</string>
            <string>20106</string>
            <string>20107</string>
            <string>20108</string>
            <string>20109</string>
            <string>20110</string>
            <string>20111</string>
            <string>20112</string>
            <string>20113</string>
            <string>20114</string>
            <string>20115</string>
            <string>20116</string>
            <string>20117</string>
            <string>20118</string>
            <string>20119</string>
            <string>20120</string>
            <string>20121</string>
            <string>20122</string>
            <string>20123</string>
            <string>20124</string>
            <string>20125</string>
            <string>20126</string>
            <string>20127</string>
            <string>20128</string>
            <string>20129</string>
            <string>20130</string>
            <string>20110</string>
            <string>20133</string>
            <string>20147</string>
            <string>SIMPLE_SEGMENT</string>
          </array>
        </value>
      </nameValuePair>
      <nameValuePair>
        <name>DISTANCE</name>
        <value>
          <string>1</string>
        </value>
      </nameValuePair>
      <nameValuePair>
        <name>DISTANCE_ANN_TYPE</name>
        <value>
          <string>org.apache.ctakes.typesystem.type.textspan.Sentence</string>
        </value>
      </nameValuePair>
      <nameValuePair>
        <name>STATUS_BOUNDARY_ANN_TYPE</name>
        <value>
          <string>org.apache.ctakes.typesystem.type.textspan.Sentence</string>
        </value>
      </nameValuePair>
    </configurationParameterSettings>
<typeSystemDescription>    
       <imports>
         <import name="org.apache.ctakes.drugner.types.TypeSystem"/>
       </imports>
</typeSystemDescription>

    <typePriorities/>
    <fsIndexCollection/>
    <capabilities>
      <capability>
        <inputs>
          <type allAnnotatorFeatures="true">uima.tcas.Annotation</type>
        </inputs>
        <outputs>
          <type allAnnotatorFeatures="true">org.apache.ctakes.drugner.type.RangeAnnotation</type>
          <type allAnnotatorFeatures="true">org.apache.ctakes.drugner.type.MeasurementAnnotation</type>
          <type allAnnotatorFeatures="true">org.apache.ctakes.drugner.type.FractionAnnotation</type>
          <type allAnnotatorFeatures="true">org.apache.ctakes.drugner.type.DrugMentionAnnotation</type>
        </outputs>
        <languagesSupported/>
      </capability>
    </capabilities>
    <operationalProperties>
      <modifiesCas>true</modifiesCas>
      <multipleDeploymentAllowed>true</multipleDeploymentAllowed>
      <outputsNewCASes>false</outputsNewCASes>
    </operationalProperties>
  </analysisEngineMetaData>
  <resourceManagerConfiguration/>
</taeDescription>