ctakes-coreference/desc/analysis_engine/ODIESvmVectorCreator.xml

<?xml version="1.0" encoding="UTF-8"?>
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<analysisEngineDescription xmlns="http://uima.apache.org/resourceSpecifier">
  <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
  <primitive>false</primitive>
  <delegateAnalysisEngineSpecifiers>
    <delegateAnalysisEngine key="ConstituencyParserAnnotator">
      <import location="../../../ctakes-constituency-parser/desc/ConstituencyParserAnnotator.xml"/>
    </delegateAnalysisEngine>
    <delegateAnalysisEngine key="TokenizerAnnotator">
      <import location="../../../ctakes-core/desc/analysis_engine/TokenizerAnnotator.xml"/>
    </delegateAnalysisEngine>
    <delegateAnalysisEngine key="ContextDependentTokenizerAnnotator">
      <import location="../../../ctakes-context-tokenizer/desc/analysis_engine/ContextDependentTokenizerAnnotator.xml"/>
    </delegateAnalysisEngine>
    <delegateAnalysisEngine key="NegationAnnotator">
      <import location="../../../ctakes-ne-contexts/desc/NegationAnnotator.xml"/>
    </delegateAnalysisEngine>
    <delegateAnalysisEngine key="StatusAnnotator">
      <import location="../../../ctakes-ne-contexts/desc/StatusAnnotator.xml"/>
    </delegateAnalysisEngine>
    <delegateAnalysisEngine key="MipacqMarkableExpander">
      <import location="../MipacqMarkableExpander.xml"/>
    </delegateAnalysisEngine>
    <delegateAnalysisEngine key="DictionaryLookupAnnotatorUMLS">
      <import location="../../../ctakes-dictionary-lookup/desc/analysis_engine/DictionaryLookupAnnotatorUMLS.xml"/>
    </delegateAnalysisEngine>
    <delegateAnalysisEngine key="SentenceDetectorAnnotator">
      <import location="../../../ctakes-core/desc/analysis_engine/SentenceDetectorAnnotator.xml"/>
    </delegateAnalysisEngine>
    <delegateAnalysisEngine key="SimpleSegmentAnnotator">
      <import location="../../../ctakes-clinical-pipeline/desc/analysis_engine/SimpleSegmentAnnotator.xml"/>
    </delegateAnalysisEngine>
    <delegateAnalysisEngine key="POSTagger">
      <import location="../../../ctakes-pos-tagger/desc/POSTagger.xml"/>
    </delegateAnalysisEngine>
    <delegateAnalysisEngine key="Chunker">
      <import location="../../../ctakes-chunker/desc/Chunker.xml"/>
    </delegateAnalysisEngine>
    <delegateAnalysisEngine key="MipacqMarkableCreator">
      <import location="../MipacqMarkableCreator.xml"/>
    </delegateAnalysisEngine>
    <delegateAnalysisEngine key="MipacqMarkablePairGenerator">
      <import location="../MipacqMarkablePairGenerator.xml"/>
    </delegateAnalysisEngine>
    <delegateAnalysisEngine key="LookupWindowAnnotator">
      <import location="../../../ctakes-clinical-pipeline/desc/analysis_engine/LookupWindowAnnotator.xml"/>
    </delegateAnalysisEngine>
    <delegateAnalysisEngine key="LvgAnnotator">
      <import location="../../../ctakes-lvg/desc/analysis_engine/LvgAnnotator.xml"/>
    </delegateAnalysisEngine>
  </delegateAnalysisEngineSpecifiers>
  <analysisEngineMetaData>
    <name>ODIE SVM Vector Creator</name>
    <description>Runs the complete pipeline for annotating clinical documents in plain text format, and create coreference vectors.</description>
    <version/>
    <vendor/>
    <configurationParameters searchStrategy="language_fallback">
      <configurationParameter>
        <name>SegmentID</name>
        <description/>
        <type>String</type>
        <multiValued>false</multiValued>
        <mandatory>false</mandatory>
        <overrides>
          <parameter>SimpleSegmentAnnotator/SegmentID</parameter>
        </overrides>
      </configurationParameter>
      <configurationParameter>
        <name>ChunkCreatorClass</name>
        <type>String</type>
        <multiValued>false</multiValued>
        <mandatory>true</mandatory>
        <overrides>
          <parameter>Chunker/ChunkCreatorClass</parameter>
        </overrides>
      </configurationParameter>
    </configurationParameters>
    <configurationParameterSettings>
      <nameValuePair>
        <name>ChunkCreatorClass</name>
        <value>
          <string>org.apache.ctakes.chunker.ae.PhraseTypeChunkCreator</string>
        </value>
      </nameValuePair>
    </configurationParameterSettings>
    <flowConstraints>
      <fixedFlow>
        <node>SimpleSegmentAnnotator</node>
        <node>SentenceDetectorAnnotator</node>
        <node>TokenizerAnnotator</node>
        <node>LvgAnnotator</node>
        <node>ContextDependentTokenizerAnnotator</node>
        <node>POSTagger</node>
        <node>Chunker</node>
        <node>LookupWindowAnnotator</node>
        <node>DictionaryLookupAnnotatorUMLS</node>
        <node>StatusAnnotator</node>
        <node>NegationAnnotator</node>
        <node>ConstituencyParserAnnotator</node>
        <node>MipacqMarkableCreator</node>
        <node>MipacqMarkableExpander</node>
        <node>MipacqMarkablePairGenerator</node>
      </fixedFlow>
    </flowConstraints>
    <typePriorities>
      <name>Ordering</name>
      <description>For subiterator</description>
      <version>1.0</version>
      <priorityList>
        <type>org.apache.ctakes.typesystem.type.textspan.Segment</type>
        <type>org.apache.ctakes.typesystem.type.textspan.Sentence</type>
        <type>org.apache.ctakes.typesystem.type.syntax.BaseToken</type>
      </priorityList>
      <priorityList>
        <type>org.apache.ctakes.typesystem.type.textspan.Sentence</type>
        <type>org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation</type>
      </priorityList>
    </typePriorities>
    <fsIndexCollection/>
    <capabilities>
      <capability>
        <inputs/>
        <outputs/>
        <languagesSupported/>
      </capability>
    </capabilities>
    <operationalProperties>
      <modifiesCas>true</modifiesCas>
      <multipleDeploymentAllowed>true</multipleDeploymentAllowed>
      <outputsNewCASes>false</outputsNewCASes>
    </operationalProperties>
  </analysisEngineMetaData>
  <resourceManagerConfiguration/>
</analysisEngineDescription>