| |
| ///////////////////////////////////////////////////////// |
| // |
| // An example pipeline that does a lot of stuff. |
| // |
| ///////////////////////////////////////////////////////// |
| |
| // Write big "Welcome", "Starting", "Finished" Banners in log. |
| set WriteBanner=yes |
| |
| // Advanced Tokenization: Regex sectionization, BIO Sentence Detector (lumper), Paragraphs, Lists. |
| load FullTokenizerPipeline |
| // OR use the standard tokenizer pipeline: |
| //load DefaultTokenizerPipeline |
| |
| // Refined tokens, Parts of Speech. |
| add ContextDependentTokenizerAnnotator |
| add POSTagger |
| |
| // Chunkers |
| load ChunkerSubPipe |
| |
| // Default fast dictionary lookup. |
| set minimumSpan=2 |
| load DictionarySubPipe |
| |
| // Cleartk Entity Attributes (negation, uncertainty, etc.). |
| load AttributeCleartkSubPipe |
| |
| // Entity Relations (degree/severity, anatomical location). |
| load RelationSubPipe |
| |
| // Temporal (event, time, dtr, tlink). |
| load TemporalSubPipe |
| |
| // Coreferences (e.g. patient = he). |
| load CorefSubPipe |
| |
| // Token covered text and token span offsets. Write bev (default) and html styles. |
| add TokenTableFileWriter SubDirectory=bsv_tokens |
| add TokenTableFileWriter SubDirectory=html_tokens TableType=HTML |
| |
| // Html output, write to subdirectory. |
| add pretty.html.HtmlTextWriter SubDirectory=html |
| |
| // Text output, write to subdirectory. |
| add pretty.plaintext.PrettyTextWriterFit SubDirectory=text |
| |
| // Table output, write to subdirectory. Write bsv (default), csv and html styles. |
| add SemanticTableFileWriter SubDirectory=bsv_table |
| add SemanticTableFileWriter SubDirectory=csv_table TableType=CSV |
| add SemanticTableFileWriter SubDirectory=html_table TableType=HTML |
| |
| // XMI output, write to subdirectory. Warning: these can be very large. |
| add FileTreeXmiWriter SubDirectory=xmi |
| |
| // Temporal Events and Times in Anafora format, write to subdirectory. |
| add EventTimeAnaforaWriter SubDirectory=anafora |
| |
| // Write some information about the run. |
| addLast org.apache.ctakes.core.util.log.FinishedLogger |
