src/test/R/zipfTestCases

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# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not use this file except in compliance with
# the License.  You may obtain a copy of the License at
#
#      http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
#
#------------------------------------------------------------------------------
# R source file to validate Zipf distribution tests in
# org.apache.commons.math.distribution.ZipfDistributionTest
#
# To run the test, install R, put this file and testFunctions
# into the same directory, launch R from this directory and then enter
# source("<name-of-this-file>")
#
# R functions used
# dzipf(x, N, s, log = FALSE) <- density
# pzipf(q, N, s) <- distribution
#------------------------------------------------------------------------------
tol <- 1E-6                       # error tolerance for tests
#------------------------------------------------------------------------------
# Function definitions

library(VGAM)
source("testFunctions")           # utility test functions

# function to verify density computations

verifyDensity <- function(points, expected, N, s, tol, log = FALSE) {
    rDensityValues <- rep(0, length(points))
    i <- 0
    for (point in points) {
        i <- i + 1
        rDensityValues[i] <- dzipf(point, N, s, log)
    }
    output <- c("Density test N = ", N, ", s = ", s)
    if (assertEquals(expected,rDensityValues,tol,"Density Values")) {
        displayPadded(output, SUCCEEDED, WIDTH)
    } else {
        displayPadded(output, FAILED, WIDTH)
    }
}

# function to verify distribution computations

verifyDistribution <- function(points, expected, N, s, tol) {
    rDistValues <- rep(0, length(points))
    i <- 0
    for (point in points) {
        i <- i + 1
        rDistValues[i] <- pzipf(point, N, s)
    }
    output <- c("Distribution test N = ", N, ", s = ", s)
    if (assertEquals(expected,rDistValues,tol,"Distribution Values")) {
        displayPadded(output, SUCCEEDED, WIDTH)
    } else {
        displayPadded(output, FAILED, WIDTH)
    }
}

#--------------------------------------------------------------------------
cat("Zipf test cases\n")

N <- 10
s <- 1

densityPoints <- c(-1, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11)
densityValues <- c(0, 0, 0.341417152147406, 0.170708576073703, 0.113805717382469, 0.0853542880368514,
                   0.0682834304294811, 0.0569028586912343, 0.0487738788782008, 0.0426771440184257,
                   0.0379352391274895, 0.0341417152147406, 0)
logDensityValues <- c(Inf, NaN, -1.07465022926458, -1.76779740982453, -2.17326251793269, -2.46094459038447,
                      -2.68408814169868, -2.86640969849264, -3.0205603783199, -3.15409177094442, -3.2718748066008,
                      -3.37723532225863, -Inf)
distributionValues <- c(0, 0, 0.341417152147406, 0.512125728221108, 0.625931445603577, 0.711285733640428,
                        0.779569164069909, 0.836472022761144, 0.885245901639344, 0.92792304565777,
                        0.96585828478526, 1, 1)

verifyDensity(densityPoints, densityValues, N, s, tol)
verifyDensity(densityPoints, logDensityValues, N, s, tol, TRUE)
verifyDistribution(densityPoints, distributionValues, N, s, tol)