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| <h1>Source code for apache_beam.ml.inference.sklearn_inference</h1><div class="highlight"><pre> |
| <span></span><span class="c1">#</span> |
| <span class="c1"># Licensed to the Apache Software Foundation (ASF) under one or more</span> |
| <span class="c1"># contributor license agreements. See the NOTICE file distributed with</span> |
| <span class="c1"># this work for additional information regarding copyright ownership.</span> |
| <span class="c1"># The ASF licenses this file to You under the Apache License, Version 2.0</span> |
| <span class="c1"># (the "License"); you may not use this file except in compliance with</span> |
| <span class="c1"># the License. You may obtain a copy of the License at</span> |
| <span class="c1">#</span> |
| <span class="c1"># http://www.apache.org/licenses/LICENSE-2.0</span> |
| <span class="c1">#</span> |
| <span class="c1"># Unless required by applicable law or agreed to in writing, software</span> |
| <span class="c1"># distributed under the License is distributed on an "AS IS" BASIS,</span> |
| <span class="c1"># WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.</span> |
| <span class="c1"># See the License for the specific language governing permissions and</span> |
| <span class="c1"># limitations under the License.</span> |
| <span class="c1">#</span> |
| |
| <span class="kn">import</span> <span class="nn">enum</span> |
| <span class="kn">import</span> <span class="nn">pickle</span> |
| <span class="kn">import</span> <span class="nn">sys</span> |
| <span class="kn">from</span> <span class="nn">typing</span> <span class="kn">import</span> <span class="n">Any</span> |
| <span class="kn">from</span> <span class="nn">typing</span> <span class="kn">import</span> <span class="n">Callable</span> |
| <span class="kn">from</span> <span class="nn">typing</span> <span class="kn">import</span> <span class="n">Dict</span> |
| <span class="kn">from</span> <span class="nn">typing</span> <span class="kn">import</span> <span class="n">Iterable</span> |
| <span class="kn">from</span> <span class="nn">typing</span> <span class="kn">import</span> <span class="n">Optional</span> |
| <span class="kn">from</span> <span class="nn">typing</span> <span class="kn">import</span> <span class="n">Sequence</span> |
| |
| <span class="kn">import</span> <span class="nn">numpy</span> |
| <span class="kn">import</span> <span class="nn">pandas</span> |
| <span class="kn">from</span> <span class="nn">sklearn.base</span> <span class="kn">import</span> <span class="n">BaseEstimator</span> |
| |
| <span class="kn">from</span> <span class="nn">apache_beam.io.filesystems</span> <span class="kn">import</span> <span class="n">FileSystems</span> |
| <span class="kn">from</span> <span class="nn">apache_beam.ml.inference</span> <span class="kn">import</span> <span class="n">utils</span> |
| <span class="kn">from</span> <span class="nn">apache_beam.ml.inference.base</span> <span class="kn">import</span> <span class="n">ModelHandler</span> |
| <span class="kn">from</span> <span class="nn">apache_beam.ml.inference.base</span> <span class="kn">import</span> <span class="n">PredictionResult</span> |
| <span class="kn">from</span> <span class="nn">apache_beam.utils.annotations</span> <span class="kn">import</span> <span class="n">experimental</span> |
| |
| <span class="k">try</span><span class="p">:</span> |
| <span class="kn">import</span> <span class="nn">joblib</span> |
| <span class="k">except</span> <span class="ne">ImportError</span><span class="p">:</span> |
| <span class="c1"># joblib is an optional dependency.</span> |
| <span class="k">pass</span> |
| |
| <span class="n">__all__</span> <span class="o">=</span> <span class="p">[</span> |
| <span class="s1">'SklearnModelHandlerNumpy'</span><span class="p">,</span> |
| <span class="s1">'SklearnModelHandlerPandas'</span><span class="p">,</span> |
| <span class="p">]</span> |
| |
| <span class="n">NumpyInferenceFn</span> <span class="o">=</span> <span class="n">Callable</span><span class="p">[</span> |
| <span class="p">[</span><span class="n">BaseEstimator</span><span class="p">,</span> <span class="n">Sequence</span><span class="p">[</span><span class="n">numpy</span><span class="o">.</span><span class="n">ndarray</span><span class="p">],</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]]],</span> <span class="n">Any</span><span class="p">]</span> |
| |
| |
| <span class="k">class</span> <span class="nc">ModelFileType</span><span class="p">(</span><span class="n">enum</span><span class="o">.</span><span class="n">Enum</span><span class="p">):</span> |
| <span class="w"> </span><span class="sd">"""Defines how a model file is serialized. Options are pickle or joblib."""</span> |
| <span class="n">PICKLE</span> <span class="o">=</span> <span class="mi">1</span> |
| <span class="n">JOBLIB</span> <span class="o">=</span> <span class="mi">2</span> |
| |
| |
| <span class="k">def</span> <span class="nf">_load_model</span><span class="p">(</span><span class="n">model_uri</span><span class="p">,</span> <span class="n">file_type</span><span class="p">):</span> |
| <span class="n">file</span> <span class="o">=</span> <span class="n">FileSystems</span><span class="o">.</span><span class="n">open</span><span class="p">(</span><span class="n">model_uri</span><span class="p">,</span> <span class="s1">'rb'</span><span class="p">)</span> |
| <span class="k">if</span> <span class="n">file_type</span> <span class="o">==</span> <span class="n">ModelFileType</span><span class="o">.</span><span class="n">PICKLE</span><span class="p">:</span> |
| <span class="k">return</span> <span class="n">pickle</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">file</span><span class="p">)</span> |
| <span class="k">elif</span> <span class="n">file_type</span> <span class="o">==</span> <span class="n">ModelFileType</span><span class="o">.</span><span class="n">JOBLIB</span><span class="p">:</span> |
| <span class="k">if</span> <span class="ow">not</span> <span class="n">joblib</span><span class="p">:</span> |
| <span class="k">raise</span> <span class="ne">ImportError</span><span class="p">(</span> |
| <span class="s1">'Could not import joblib in this execution environment. '</span> |
| <span class="s1">'For help with managing dependencies on Python workers.'</span> |
| <span class="s1">'see https://beam.apache.org/documentation/sdks/python-pipeline-dependencies/'</span> <span class="c1"># pylint: disable=line-too-long</span> |
| <span class="p">)</span> |
| <span class="k">return</span> <span class="n">joblib</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">file</span><span class="p">)</span> |
| <span class="k">raise</span> <span class="ne">AssertionError</span><span class="p">(</span><span class="s1">'Unsupported serialization type.'</span><span class="p">)</span> |
| |
| |
| <span class="k">def</span> <span class="nf">_default_numpy_inference_fn</span><span class="p">(</span> |
| <span class="n">model</span><span class="p">:</span> <span class="n">BaseEstimator</span><span class="p">,</span> |
| <span class="n">batch</span><span class="p">:</span> <span class="n">Sequence</span><span class="p">[</span><span class="n">numpy</span><span class="o">.</span><span class="n">ndarray</span><span class="p">],</span> |
| <span class="n">inference_args</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">)</span> <span class="o">-></span> <span class="n">Any</span><span class="p">:</span> |
| <span class="c1"># vectorize data for better performance</span> |
| <span class="n">vectorized_batch</span> <span class="o">=</span> <span class="n">numpy</span><span class="o">.</span><span class="n">stack</span><span class="p">(</span><span class="n">batch</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span> |
| <span class="k">return</span> <span class="n">model</span><span class="o">.</span><span class="n">predict</span><span class="p">(</span><span class="n">vectorized_batch</span><span class="p">)</span> |
| |
| |
| <div class="viewcode-block" id="SklearnModelHandlerNumpy"><a class="viewcode-back" href="../../../../apache_beam.ml.inference.sklearn_inference.html#apache_beam.ml.inference.sklearn_inference.SklearnModelHandlerNumpy">[docs]</a><span class="k">class</span> <span class="nc">SklearnModelHandlerNumpy</span><span class="p">(</span><span class="n">ModelHandler</span><span class="p">[</span><span class="n">numpy</span><span class="o">.</span><span class="n">ndarray</span><span class="p">,</span> |
| <span class="n">PredictionResult</span><span class="p">,</span> |
| <span class="n">BaseEstimator</span><span class="p">]):</span> |
| <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span> |
| <span class="bp">self</span><span class="p">,</span> |
| <span class="n">model_uri</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> |
| <span class="n">model_file_type</span><span class="p">:</span> <span class="n">ModelFileType</span> <span class="o">=</span> <span class="n">ModelFileType</span><span class="o">.</span><span class="n">PICKLE</span><span class="p">,</span> |
| <span class="o">*</span><span class="p">,</span> |
| <span class="n">inference_fn</span><span class="p">:</span> <span class="n">NumpyInferenceFn</span> <span class="o">=</span> <span class="n">_default_numpy_inference_fn</span><span class="p">,</span> |
| <span class="n">min_batch_size</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">int</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span> |
| <span class="n">max_batch_size</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">int</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">):</span> |
| <span class="w"> </span><span class="sd">""" Implementation of the ModelHandler interface for scikit-learn</span> |
| <span class="sd"> using numpy arrays as input.</span> |
| |
| <span class="sd"> Example Usage::</span> |
| |
| <span class="sd"> pcoll | RunInference(SklearnModelHandlerNumpy(model_uri="my_uri"))</span> |
| |
| <span class="sd"> Args:</span> |
| <span class="sd"> model_uri: The URI to where the model is saved.</span> |
| <span class="sd"> model_file_type: The method of serialization of the argument.</span> |
| <span class="sd"> default=pickle</span> |
| <span class="sd"> inference_fn: The inference function to use.</span> |
| <span class="sd"> default=_default_numpy_inference_fn</span> |
| <span class="sd"> min_batch_size: the minimum batch size to use when batching inputs. This</span> |
| <span class="sd"> batch will be fed into the inference_fn as a Sequence of Numpy</span> |
| <span class="sd"> ndarrays.</span> |
| <span class="sd"> max_batch_size: the maximum batch size to use when batching inputs. This</span> |
| <span class="sd"> batch will be fed into the inference_fn as a Sequence of Numpy</span> |
| <span class="sd"> ndarrays.</span> |
| <span class="sd"> """</span> |
| <span class="bp">self</span><span class="o">.</span><span class="n">_model_uri</span> <span class="o">=</span> <span class="n">model_uri</span> |
| <span class="bp">self</span><span class="o">.</span><span class="n">_model_file_type</span> <span class="o">=</span> <span class="n">model_file_type</span> |
| <span class="bp">self</span><span class="o">.</span><span class="n">_model_inference_fn</span> <span class="o">=</span> <span class="n">inference_fn</span> |
| <span class="bp">self</span><span class="o">.</span><span class="n">_batching_kwargs</span> <span class="o">=</span> <span class="p">{}</span> |
| <span class="k">if</span> <span class="n">min_batch_size</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span> |
| <span class="bp">self</span><span class="o">.</span><span class="n">_batching_kwargs</span><span class="p">[</span><span class="s1">'min_batch_size'</span><span class="p">]</span> <span class="o">=</span> <span class="n">min_batch_size</span> |
| <span class="k">if</span> <span class="n">max_batch_size</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span> |
| <span class="bp">self</span><span class="o">.</span><span class="n">_batching_kwargs</span><span class="p">[</span><span class="s1">'max_batch_size'</span><span class="p">]</span> <span class="o">=</span> <span class="n">max_batch_size</span> |
| |
| <div class="viewcode-block" id="SklearnModelHandlerNumpy.load_model"><a class="viewcode-back" href="../../../../apache_beam.ml.inference.sklearn_inference.html#apache_beam.ml.inference.sklearn_inference.SklearnModelHandlerNumpy.load_model">[docs]</a> <span class="k">def</span> <span class="nf">load_model</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-></span> <span class="n">BaseEstimator</span><span class="p">:</span> |
| <span class="w"> </span><span class="sd">"""Loads and initializes a model for processing."""</span> |
| <span class="k">return</span> <span class="n">_load_model</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_model_uri</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">_model_file_type</span><span class="p">)</span></div> |
| |
| <div class="viewcode-block" id="SklearnModelHandlerNumpy.update_model_path"><a class="viewcode-back" href="../../../../apache_beam.ml.inference.sklearn_inference.html#apache_beam.ml.inference.sklearn_inference.SklearnModelHandlerNumpy.update_model_path">[docs]</a> <span class="k">def</span> <span class="nf">update_model_path</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">model_path</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">):</span> |
| <span class="bp">self</span><span class="o">.</span><span class="n">_model_uri</span> <span class="o">=</span> <span class="n">model_path</span> <span class="k">if</span> <span class="n">model_path</span> <span class="k">else</span> <span class="bp">self</span><span class="o">.</span><span class="n">_model_uri</span></div> |
| |
| <div class="viewcode-block" id="SklearnModelHandlerNumpy.run_inference"><a class="viewcode-back" href="../../../../apache_beam.ml.inference.sklearn_inference.html#apache_beam.ml.inference.sklearn_inference.SklearnModelHandlerNumpy.run_inference">[docs]</a> <span class="k">def</span> <span class="nf">run_inference</span><span class="p">(</span> |
| <span class="bp">self</span><span class="p">,</span> |
| <span class="n">batch</span><span class="p">:</span> <span class="n">Sequence</span><span class="p">[</span><span class="n">numpy</span><span class="o">.</span><span class="n">ndarray</span><span class="p">],</span> |
| <span class="n">model</span><span class="p">:</span> <span class="n">BaseEstimator</span><span class="p">,</span> |
| <span class="n">inference_args</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]]</span> <span class="o">=</span> <span class="kc">None</span> |
| <span class="p">)</span> <span class="o">-></span> <span class="n">Iterable</span><span class="p">[</span><span class="n">PredictionResult</span><span class="p">]:</span> |
| <span class="w"> </span><span class="sd">"""Runs inferences on a batch of numpy arrays.</span> |
| |
| <span class="sd"> Args:</span> |
| <span class="sd"> batch: A sequence of examples as numpy arrays. They should</span> |
| <span class="sd"> be single examples.</span> |
| <span class="sd"> model: A numpy model or pipeline. Must implement predict(X).</span> |
| <span class="sd"> Where the parameter X is a numpy array.</span> |
| <span class="sd"> inference_args: Any additional arguments for an inference.</span> |
| |
| <span class="sd"> Returns:</span> |
| <span class="sd"> An Iterable of type PredictionResult.</span> |
| <span class="sd"> """</span> |
| <span class="n">predictions</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_model_inference_fn</span><span class="p">(</span> |
| <span class="n">model</span><span class="p">,</span> |
| <span class="n">batch</span><span class="p">,</span> |
| <span class="n">inference_args</span><span class="p">,</span> |
| <span class="p">)</span> |
| |
| <span class="k">return</span> <span class="n">utils</span><span class="o">.</span><span class="n">_convert_to_result</span><span class="p">(</span> |
| <span class="n">batch</span><span class="p">,</span> <span class="n">predictions</span><span class="p">,</span> <span class="n">model_id</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">_model_uri</span><span class="p">)</span></div> |
| |
| <div class="viewcode-block" id="SklearnModelHandlerNumpy.get_num_bytes"><a class="viewcode-back" href="../../../../apache_beam.ml.inference.sklearn_inference.html#apache_beam.ml.inference.sklearn_inference.SklearnModelHandlerNumpy.get_num_bytes">[docs]</a> <span class="k">def</span> <span class="nf">get_num_bytes</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">batch</span><span class="p">:</span> <span class="n">Sequence</span><span class="p">[</span><span class="n">numpy</span><span class="o">.</span><span class="n">ndarray</span><span class="p">])</span> <span class="o">-></span> <span class="nb">int</span><span class="p">:</span> |
| <span class="w"> </span><span class="sd">"""</span> |
| <span class="sd"> Returns:</span> |
| <span class="sd"> The number of bytes of data for a batch.</span> |
| <span class="sd"> """</span> |
| <span class="k">return</span> <span class="nb">sum</span><span class="p">(</span><span class="n">sys</span><span class="o">.</span><span class="n">getsizeof</span><span class="p">(</span><span class="n">element</span><span class="p">)</span> <span class="k">for</span> <span class="n">element</span> <span class="ow">in</span> <span class="n">batch</span><span class="p">)</span></div> |
| |
| <div class="viewcode-block" id="SklearnModelHandlerNumpy.get_metrics_namespace"><a class="viewcode-back" href="../../../../apache_beam.ml.inference.sklearn_inference.html#apache_beam.ml.inference.sklearn_inference.SklearnModelHandlerNumpy.get_metrics_namespace">[docs]</a> <span class="k">def</span> <span class="nf">get_metrics_namespace</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-></span> <span class="nb">str</span><span class="p">:</span> |
| <span class="w"> </span><span class="sd">"""</span> |
| <span class="sd"> Returns:</span> |
| <span class="sd"> A namespace for metrics collected by the RunInference transform.</span> |
| <span class="sd"> """</span> |
| <span class="k">return</span> <span class="s1">'BeamML_Sklearn'</span></div> |
| |
| <div class="viewcode-block" id="SklearnModelHandlerNumpy.batch_elements_kwargs"><a class="viewcode-back" href="../../../../apache_beam.ml.inference.sklearn_inference.html#apache_beam.ml.inference.sklearn_inference.SklearnModelHandlerNumpy.batch_elements_kwargs">[docs]</a> <span class="k">def</span> <span class="nf">batch_elements_kwargs</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span> |
| <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_batching_kwargs</span></div></div> |
| |
| |
| <span class="n">PandasInferenceFn</span> <span class="o">=</span> <span class="n">Callable</span><span class="p">[</span> |
| <span class="p">[</span><span class="n">BaseEstimator</span><span class="p">,</span> <span class="n">Sequence</span><span class="p">[</span><span class="n">pandas</span><span class="o">.</span><span class="n">DataFrame</span><span class="p">],</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]]],</span> <span class="n">Any</span><span class="p">]</span> |
| |
| |
| <span class="k">def</span> <span class="nf">_default_pandas_inference_fn</span><span class="p">(</span> |
| <span class="n">model</span><span class="p">:</span> <span class="n">BaseEstimator</span><span class="p">,</span> |
| <span class="n">batch</span><span class="p">:</span> <span class="n">Sequence</span><span class="p">[</span><span class="n">pandas</span><span class="o">.</span><span class="n">DataFrame</span><span class="p">],</span> |
| <span class="n">inference_args</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">)</span> <span class="o">-></span> <span class="n">Any</span><span class="p">:</span> |
| <span class="c1"># vectorize data for better performance</span> |
| <span class="n">vectorized_batch</span> <span class="o">=</span> <span class="n">pandas</span><span class="o">.</span><span class="n">concat</span><span class="p">(</span><span class="n">batch</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span> |
| <span class="n">predictions</span> <span class="o">=</span> <span class="n">model</span><span class="o">.</span><span class="n">predict</span><span class="p">(</span><span class="n">vectorized_batch</span><span class="p">)</span> |
| <span class="n">splits</span> <span class="o">=</span> <span class="p">[</span> |
| <span class="n">vectorized_batch</span><span class="o">.</span><span class="n">iloc</span><span class="p">[[</span><span class="n">i</span><span class="p">]]</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">vectorized_batch</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span> |
| <span class="p">]</span> |
| <span class="k">return</span> <span class="n">predictions</span><span class="p">,</span> <span class="n">splits</span> |
| |
| |
| <div class="viewcode-block" id="SklearnModelHandlerPandas"><a class="viewcode-back" href="../../../../apache_beam.ml.inference.sklearn_inference.html#apache_beam.ml.inference.sklearn_inference.SklearnModelHandlerPandas">[docs]</a><span class="nd">@experimental</span><span class="p">(</span><span class="n">extra_message</span><span class="o">=</span><span class="s2">"No backwards-compatibility guarantees."</span><span class="p">)</span> |
| <span class="k">class</span> <span class="nc">SklearnModelHandlerPandas</span><span class="p">(</span><span class="n">ModelHandler</span><span class="p">[</span><span class="n">pandas</span><span class="o">.</span><span class="n">DataFrame</span><span class="p">,</span> |
| <span class="n">PredictionResult</span><span class="p">,</span> |
| <span class="n">BaseEstimator</span><span class="p">]):</span> |
| <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span> |
| <span class="bp">self</span><span class="p">,</span> |
| <span class="n">model_uri</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> |
| <span class="n">model_file_type</span><span class="p">:</span> <span class="n">ModelFileType</span> <span class="o">=</span> <span class="n">ModelFileType</span><span class="o">.</span><span class="n">PICKLE</span><span class="p">,</span> |
| <span class="o">*</span><span class="p">,</span> |
| <span class="n">inference_fn</span><span class="p">:</span> <span class="n">PandasInferenceFn</span> <span class="o">=</span> <span class="n">_default_pandas_inference_fn</span><span class="p">,</span> |
| <span class="n">min_batch_size</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">int</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span> |
| <span class="n">max_batch_size</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">int</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">):</span> |
| <span class="w"> </span><span class="sd">"""Implementation of the ModelHandler interface for scikit-learn that</span> |
| <span class="sd"> supports pandas dataframes.</span> |
| |
| <span class="sd"> Example Usage::</span> |
| |
| <span class="sd"> pcoll | RunInference(SklearnModelHandlerPandas(model_uri="my_uri"))</span> |
| |
| <span class="sd"> **NOTE:** This API and its implementation are under development and</span> |
| <span class="sd"> do not provide backward compatibility guarantees.</span> |
| |
| <span class="sd"> Args:</span> |
| <span class="sd"> model_uri: The URI to where the model is saved.</span> |
| <span class="sd"> model_file_type: The method of serialization of the argument.</span> |
| <span class="sd"> default=pickle</span> |
| <span class="sd"> inference_fn: The inference function to use.</span> |
| <span class="sd"> default=_default_pandas_inference_fn</span> |
| <span class="sd"> min_batch_size: the minimum batch size to use when batching inputs. This</span> |
| <span class="sd"> batch will be fed into the inference_fn as a Sequence of Pandas</span> |
| <span class="sd"> Dataframes.</span> |
| <span class="sd"> max_batch_size: the maximum batch size to use when batching inputs. This</span> |
| <span class="sd"> batch will be fed into the inference_fn as a Sequence of Pandas</span> |
| <span class="sd"> Dataframes.</span> |
| |
| <span class="sd"> """</span> |
| <span class="bp">self</span><span class="o">.</span><span class="n">_model_uri</span> <span class="o">=</span> <span class="n">model_uri</span> |
| <span class="bp">self</span><span class="o">.</span><span class="n">_model_file_type</span> <span class="o">=</span> <span class="n">model_file_type</span> |
| <span class="bp">self</span><span class="o">.</span><span class="n">_model_inference_fn</span> <span class="o">=</span> <span class="n">inference_fn</span> |
| <span class="bp">self</span><span class="o">.</span><span class="n">_batching_kwargs</span> <span class="o">=</span> <span class="p">{}</span> |
| <span class="k">if</span> <span class="n">min_batch_size</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span> |
| <span class="bp">self</span><span class="o">.</span><span class="n">_batching_kwargs</span><span class="p">[</span><span class="s1">'min_batch_size'</span><span class="p">]</span> <span class="o">=</span> <span class="n">min_batch_size</span> |
| <span class="k">if</span> <span class="n">max_batch_size</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span> |
| <span class="bp">self</span><span class="o">.</span><span class="n">_batching_kwargs</span><span class="p">[</span><span class="s1">'max_batch_size'</span><span class="p">]</span> <span class="o">=</span> <span class="n">max_batch_size</span> |
| |
| <div class="viewcode-block" id="SklearnModelHandlerPandas.load_model"><a class="viewcode-back" href="../../../../apache_beam.ml.inference.sklearn_inference.html#apache_beam.ml.inference.sklearn_inference.SklearnModelHandlerPandas.load_model">[docs]</a> <span class="k">def</span> <span class="nf">load_model</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-></span> <span class="n">BaseEstimator</span><span class="p">:</span> |
| <span class="w"> </span><span class="sd">"""Loads and initializes a model for processing."""</span> |
| <span class="k">return</span> <span class="n">_load_model</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_model_uri</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">_model_file_type</span><span class="p">)</span></div> |
| |
| <div class="viewcode-block" id="SklearnModelHandlerPandas.update_model_path"><a class="viewcode-back" href="../../../../apache_beam.ml.inference.sklearn_inference.html#apache_beam.ml.inference.sklearn_inference.SklearnModelHandlerPandas.update_model_path">[docs]</a> <span class="k">def</span> <span class="nf">update_model_path</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">model_path</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">):</span> |
| <span class="bp">self</span><span class="o">.</span><span class="n">_model_uri</span> <span class="o">=</span> <span class="n">model_path</span> <span class="k">if</span> <span class="n">model_path</span> <span class="k">else</span> <span class="bp">self</span><span class="o">.</span><span class="n">_model_uri</span></div> |
| |
| <div class="viewcode-block" id="SklearnModelHandlerPandas.run_inference"><a class="viewcode-back" href="../../../../apache_beam.ml.inference.sklearn_inference.html#apache_beam.ml.inference.sklearn_inference.SklearnModelHandlerPandas.run_inference">[docs]</a> <span class="k">def</span> <span class="nf">run_inference</span><span class="p">(</span> |
| <span class="bp">self</span><span class="p">,</span> |
| <span class="n">batch</span><span class="p">:</span> <span class="n">Sequence</span><span class="p">[</span><span class="n">pandas</span><span class="o">.</span><span class="n">DataFrame</span><span class="p">],</span> |
| <span class="n">model</span><span class="p">:</span> <span class="n">BaseEstimator</span><span class="p">,</span> |
| <span class="n">inference_args</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">Dict</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">Any</span><span class="p">]]</span> <span class="o">=</span> <span class="kc">None</span> |
| <span class="p">)</span> <span class="o">-></span> <span class="n">Iterable</span><span class="p">[</span><span class="n">PredictionResult</span><span class="p">]:</span> |
| <span class="w"> </span><span class="sd">"""</span> |
| <span class="sd"> Runs inferences on a batch of pandas dataframes.</span> |
| |
| <span class="sd"> Args:</span> |
| <span class="sd"> batch: A sequence of examples as numpy arrays. They should</span> |
| <span class="sd"> be single examples.</span> |
| <span class="sd"> model: A dataframe model or pipeline. Must implement predict(X).</span> |
| <span class="sd"> Where the parameter X is a pandas dataframe.</span> |
| <span class="sd"> inference_args: Any additional arguments for an inference.</span> |
| |
| <span class="sd"> Returns:</span> |
| <span class="sd"> An Iterable of type PredictionResult.</span> |
| <span class="sd"> """</span> |
| <span class="c1"># sklearn_inference currently only supports single rowed dataframes.</span> |
| <span class="k">for</span> <span class="n">dataframe</span> <span class="ow">in</span> <span class="nb">iter</span><span class="p">(</span><span class="n">batch</span><span class="p">):</span> |
| <span class="k">if</span> <span class="n">dataframe</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span> |
| <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">'Only dataframes with single rows are supported.'</span><span class="p">)</span> |
| |
| <span class="n">predictions</span><span class="p">,</span> <span class="n">splits</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_model_inference_fn</span><span class="p">(</span><span class="n">model</span><span class="p">,</span> <span class="n">batch</span><span class="p">,</span> <span class="n">inference_args</span><span class="p">)</span> |
| |
| <span class="k">return</span> <span class="n">utils</span><span class="o">.</span><span class="n">_convert_to_result</span><span class="p">(</span> |
| <span class="n">splits</span><span class="p">,</span> <span class="n">predictions</span><span class="p">,</span> <span class="n">model_id</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">_model_uri</span><span class="p">)</span></div> |
| |
| <div class="viewcode-block" id="SklearnModelHandlerPandas.get_num_bytes"><a class="viewcode-back" href="../../../../apache_beam.ml.inference.sklearn_inference.html#apache_beam.ml.inference.sklearn_inference.SklearnModelHandlerPandas.get_num_bytes">[docs]</a> <span class="k">def</span> <span class="nf">get_num_bytes</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">batch</span><span class="p">:</span> <span class="n">Sequence</span><span class="p">[</span><span class="n">pandas</span><span class="o">.</span><span class="n">DataFrame</span><span class="p">])</span> <span class="o">-></span> <span class="nb">int</span><span class="p">:</span> |
| <span class="w"> </span><span class="sd">"""</span> |
| <span class="sd"> Returns:</span> |
| <span class="sd"> The number of bytes of data for a batch.</span> |
| <span class="sd"> """</span> |
| <span class="k">return</span> <span class="nb">sum</span><span class="p">(</span><span class="n">df</span><span class="o">.</span><span class="n">memory_usage</span><span class="p">(</span><span class="n">deep</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span><span class="o">.</span><span class="n">sum</span><span class="p">()</span> <span class="k">for</span> <span class="n">df</span> <span class="ow">in</span> <span class="n">batch</span><span class="p">)</span></div> |
| |
| <div class="viewcode-block" id="SklearnModelHandlerPandas.get_metrics_namespace"><a class="viewcode-back" href="../../../../apache_beam.ml.inference.sklearn_inference.html#apache_beam.ml.inference.sklearn_inference.SklearnModelHandlerPandas.get_metrics_namespace">[docs]</a> <span class="k">def</span> <span class="nf">get_metrics_namespace</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-></span> <span class="nb">str</span><span class="p">:</span> |
| <span class="w"> </span><span class="sd">"""</span> |
| <span class="sd"> Returns:</span> |
| <span class="sd"> A namespace for metrics collected by the RunInference transform.</span> |
| <span class="sd"> """</span> |
| <span class="k">return</span> <span class="s1">'BeamML_Sklearn'</span></div> |
| |
| <div class="viewcode-block" id="SklearnModelHandlerPandas.batch_elements_kwargs"><a class="viewcode-back" href="../../../../apache_beam.ml.inference.sklearn_inference.html#apache_beam.ml.inference.sklearn_inference.SklearnModelHandlerPandas.batch_elements_kwargs">[docs]</a> <span class="k">def</span> <span class="nf">batch_elements_kwargs</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span> |
| <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_batching_kwargs</span></div></div> |
| </pre></div> |
| |
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