| --- |
| title: "Configuring a developer environment" |
| description: > |
| Learn how to configure your environment to allow you to contribute |
| to the arrow package |
| output: rmarkdown::html_vignette |
| --- |
| |
| ```{r setup-options, include=FALSE} |
| knitr::opts_chunk$set(error = TRUE, eval = FALSE) |
| # Get environment variables describing what to evaluate |
| run <- tolower(Sys.getenv("RUN_DEVDOCS", "false")) == "true" |
| macos <- tolower(Sys.getenv("DEVDOCS_MACOS", "false")) == "true" |
| ubuntu <- tolower(Sys.getenv("DEVDOCS_UBUNTU", "false")) == "true" |
| windows <- tolower(Sys.getenv("DEVDOCS_WINDOWS", "false")) == "true" |
| sys_install <- tolower(Sys.getenv("DEVDOCS_SYSTEM_INSTALL", "false")) == "true" |
| # Update the source knit_hook to save the chunk (if it is marked to be saved) |
| knit_hooks_source <- knitr::knit_hooks$get("source") |
| knitr::knit_hooks$set(source = function(x, options) { |
| # Extra paranoia about when this will write the chunks to the script, we will |
| # only save when: |
| # * CI is true |
| # * RUN_DEVDOCS is true |
| # * options$save is TRUE (and a check that not NULL won't crash it) |
| if (as.logical(Sys.getenv("CI", FALSE)) && run && !is.null(options$save) && options$save) |
| cat(x, file = "script.sh", append = TRUE, sep = "\n") |
| # but hide the blocks we want hidden: |
| if (!is.null(options$hide) && options$hide) { |
| return(NULL) |
| } |
| knit_hooks_source(x, options) |
| }) |
| ``` |
| |
| ```{bash, save=run, hide=TRUE} |
| # Stop on failure, echo input as we go |
| set -e |
| set -x |
| ``` |
| |
| The Arrow R package is unique compared to other R packages that you may have |
| contributed to because it builds on top of the large and feature-rich Arrow C++ |
| implementation. Because the R package integrates tightly with Arrow C++, |
| it typically requires a dedicated copy of the library (i.e., it is usually |
| not possible to link to a system version of libarrow during development). |
| |
| ## Option 1: Using nightly libarrow binaries |
| |
| On Linux, macOS, and Windows you can use the same workflow you might use for another |
| package that contains compiled code (e.g., `R CMD INSTALL .` from |
| a terminal, `devtools::load_all()` from an R prompt, or `Install & Restart` from |
| RStudio). If the `arrow/r/libarrow` directory is not populated, the configure script will |
| attempt to download the latest nightly libarrow binary, extract it to the |
| `arrow/r/libarrow` directory (macOS, Linux) or `arrow/r/windows` |
| directory (Windows), and continue building the R package as usual. |
| |
| Most of the time, you won't need to update your version of libarrow because |
| the R package rarely changes with updates to the C++ library; however, if you |
| start to get errors when rebuilding the R package, you may have to remove the |
| `libarrow` directory (macOS, Linux) or `windows` directory (Windows) |
| and do a "clean" rebuild. You can do this from a terminal with |
| `R CMD INSTALL . --preclean`, from RStudio using the "Clean and Install" |
| option from "Build" tab, or using `make clean` if you are using the `Makefile` |
| located in the root of the R package. |
| |
| ## Option 2: Use a local Arrow C++ development build |
| |
| If you need to alter both libarrow and the R package code, or if you can't get a binary version of the latest libarrow elsewhere, you'll need to build it from source. This section discusses how to set up a C++ libarrow build configured to work with the R package. For more general resources, see the [Arrow C++ developer guide](https://arrow.apache.org/docs/developers/cpp/building.html). |
| |
| There are five major steps to the process. |
| |
| ### Step 1 - Install dependencies |
| |
| When building libarrow, by default, system dependencies will be used if suitable versions are found. If system dependencies are not present, libarrow will build them during its own build process. The only dependencies that you need to install _outside_ of the build process are [cmake](https://cmake.org/) (for configuring the build), [openssl](https://www.openssl.org/) and [curl](https://curl.se/libcurl/) if you are building with S3 and GCS support, and [libxml2](https://gitlab.gnome.org/GNOME/libxml2/-/wikis/home) if you're building with Azure support. |
| |
| For a faster build, you may choose to pre-install more C++ library dependencies (such as [lz4](http://lz4.github.io/lz4/), [zstd](https://facebook.github.io/zstd/), etc.) on the system so that they don't need to be built from source in the libarrow build. |
| |
| #### Ubuntu |
| ```{bash, save=run & ubuntu} |
| sudo apt install -y cmake libcurl4-openssl-dev libssl-dev libxml2-dev |
| ``` |
| |
| #### macOS |
| ```{bash, save=run & macos} |
| brew install cmake openssl libxml2 |
| ``` |
| |
| ### Step 2 - Configure the libarrow build |
| |
| We recommend that you configure libarrow to be built to a user-level directory rather than a system directory for your development work. This is so that the development version you are using doesn't overwrite a released version of libarrow you may already have installed, and so that you are also able work with more than one version of libarrow (by using different `ARROW_HOME` directories for the different versions). |
| |
| In the example below, libarrow is installed to a directory called `dist` that has the same parent directory as the arrow checkout. Your installation of the Arrow R package can point to any directory with any name, though we recommend *not* placing it inside of the arrow git checkout directory as unwanted changes could stop it working properly. |
| |
| ```{bash, save=run & !sys_install} |
| export ARROW_HOME=$(pwd)/dist |
| mkdir $ARROW_HOME |
| ``` |
| |
| _Special instructions on Linux:_ You will need to set `LD_LIBRARY_PATH` to the `lib` directory that is under where you set `$ARROW_HOME`, before launching R and using arrow. One way to do this is to add it to your profile (we use `~/.bash_profile` here, but you might need to put this in a different file depending on your setup, e.g. if you use a shell other than `bash`). On macOS you do not need to do this because the macOS shared library paths are hardcoded to their locations during build time. |
| |
| ```{bash, save=run & ubuntu & !sys_install} |
| export LD_LIBRARY_PATH=$ARROW_HOME/lib:$LD_LIBRARY_PATH |
| echo "export LD_LIBRARY_PATH=$ARROW_HOME/lib:$LD_LIBRARY_PATH" >> ~/.bash_profile |
| ``` |
| |
| Start by navigating in a terminal to the arrow repository. You will need to create a directory into which the C++ build will put its contents. We recommend that you make a `build` directory inside of the `cpp` directory of the Arrow git repository (it is git-ignored, so you won't accidentally check it in). Next, change directories to be inside `cpp/build`: |
| |
| ```{bash, save=run & !sys_install} |
| pushd arrow |
| mkdir -p cpp/build |
| pushd cpp/build |
| ``` |
| |
| You'll first call `cmake` to configure the build and then `make install`. For the R package, you'll need to enable several features in libarrow using `-D` flags: |
| |
| #### {.tabset} |
| |
| ##### Linux / Mac OS |
| |
| ```{bash, save=run & !sys_install & !windows} |
| cmake \ |
| -DCMAKE_INSTALL_PREFIX=$ARROW_HOME \ |
| -DCMAKE_INSTALL_LIBDIR=lib \ |
| -DARROW_COMPUTE=ON \ |
| -DARROW_CSV=ON \ |
| -DARROW_DATASET=ON \ |
| -DARROW_EXTRA_ERROR_CONTEXT=ON \ |
| -DARROW_FILESYSTEM=ON \ |
| -DARROW_INSTALL_NAME_RPATH=OFF \ |
| -DARROW_JEMALLOC=ON \ |
| -DARROW_JSON=ON \ |
| -DARROW_PARQUET=ON \ |
| -DARROW_WITH_SNAPPY=ON \ |
| -DARROW_WITH_ZLIB=ON \ |
| .. |
| ``` |
| |
| #### {-} |
| |
| `..` refers to the C++ source directory: you're in `cpp/build` and the source is in `cpp`. |
| |
| ```{bash, save=run & !sys_install, hide=TRUE} |
| # For testing purposes, build with only shared libraries |
| cmake \ |
| -DARROW_BUILD_SHARED=ON \ |
| -DARROW_BUILD_STATIC=OFF \ |
| .. |
| ``` |
| |
| #### Enabling more Arrow features |
| |
| To enable optional features including: S3 support, an alternative memory allocator, and additional compression libraries, add some or all of these flags to your call to `cmake` (the trailing `\` makes them easier to paste into a bash shell on a new line): |
| |
| ```bash |
| -DARROW_GCS=ON \ |
| -DARROW_MIMALLOC=ON \ |
| -DARROW_S3=ON \ |
| -DARROW_AZURE=ON \ |
| -DARROW_WITH_BROTLI=ON \ |
| -DARROW_WITH_BZ2=ON \ |
| -DARROW_WITH_LZ4=ON \ |
| -DARROW_WITH_SNAPPY=ON \ |
| -DARROW_WITH_ZSTD=ON \ |
| ``` |
| |
| Other flags that may be useful: |
| |
| * `-DBoost_SOURCE=BUNDLED` and `-DThrift_SOURCE=BUNDLED`, for example, or any other dependency `*_SOURCE`, if you have a system version of a C++ dependency that doesn't work correctly with Arrow. This tells the build to compile its own version of the dependency from source. |
| |
| * `-DCMAKE_BUILD_TYPE=debug` or `-DCMAKE_BUILD_TYPE=relwithdebinfo` can be useful for debugging. You probably don't want to do this generally because a debug build is much slower at runtime than the default `release` build. |
| |
| * `-DARROW_BUILD_STATIC=ON` and `-DARROW_BUILD_SHARED=OFF` if you want to use static libraries instead of dynamic libraries. With static libraries there isn't a risk of the R package linking to the wrong library, but it does mean if you change the C++ code you have to recompile both the C++ libraries and the R package. Compilers typically will link to static libraries only if the dynamic ones are not present, which is why we need to set `-DARROW_BUILD_SHARED=OFF`. If you are switching after compiling and installing previously, you may need to remove the `.dll` or `.so` files from `$ARROW_HOME/dist/bin`. |
| |
| _Note_ `cmake` is particularly sensitive to whitespacing, if you see errors, check that you don't have any errant whitespace. |
| |
| ### Step 3 - Building libarrow |
| |
| You can add `-j#` at the end of the command here too to speed up compilation by running in parallel (where `#` is the number of cores you have available). |
| |
| ```{bash, save=run & !(sys_install & ubuntu)} |
| cmake --build . --target install -j8 |
| ``` |
| |
| ### Step 4 - Build the Arrow R package |
| |
| Once you've built libarrow, you can install the R package and its dependencies, along with additional dev dependencies, from the git checkout like below. You might need to either pick and set a repository interactively or you could add a repository to the `install.packages()` command with `repos="https://cloud.r-project.org"`. |
| |
| ```{bash, save=run} |
| popd # To go back to the root directory of the project, from cpp/build |
| pushd r |
| R -e 'install.packages("remotes"); remotes::install_deps(dependencies = TRUE)' |
| R CMD INSTALL --no-multiarch . |
| ``` |
| |
| The `--no-multiarch` flag makes it only compile on the "main" architecture. This will compile for the architecture that the R in your path corresponds to. If you compile on one architecture and then switch to another, make sure to pass the `--preclean` flag so that the R package code is recompiled for the new architecture. Otherwise, you may see errors like `LoadLibrary failure: %1 is not a valid Win32 application`. |
| |
| #### Compilation flags |
| |
| If you need to set any compilation flags while building the C++ |
| extensions, you can use the `ARROW_R_CXXFLAGS` environment variable. For |
| example, if you are using `perf` to profile the R extensions, you may |
| need to set |
| |
| ```bash |
| export ARROW_R_CXXFLAGS=-fno-omit-frame-pointer |
| ``` |
| |
| #### Recompiling the C++ code |
| |
| With the setup described here, you should not need to rebuild the Arrow library or even the C++ source in the R package as you iterate and work on the R package. The only time those should need to be rebuilt is if you have changed the C++ in the R package (and even then, `R CMD INSTALL .` should only need to recompile the files that have changed) _or_ if the libarrow C++ has changed and there is a mismatch between libarrow and the R package. If you find yourself rebuilding either or both each time you install the package or run tests, something is probably wrong with your set up. |
| |
| <details> |
| <summary>For a full build: a `cmake` command with all of the R-relevant optional dependencies turned on. Development with other languages might require different flags as well. For example, to develop Python, you would need to also add `-DARROW_PYTHON=ON` (though all of the other flags used for Python are already included here).</summary> |
| <p> |
| |
| ```bash |
| cmake \ |
| -DCMAKE_INSTALL_PREFIX=$ARROW_HOME \ |
| -DCMAKE_INSTALL_LIBDIR=lib \ |
| -DARROW_COMPUTE=ON \ |
| -DARROW_CSV=ON \ |
| -DARROW_DATASET=ON \ |
| -DARROW_EXTRA_ERROR_CONTEXT=ON \ |
| -DARROW_FILESYSTEM=ON \ |
| -DARROW_GCS=ON \ |
| -DARROW_INSTALL_NAME_RPATH=OFF \ |
| -DARROW_JEMALLOC=ON \ |
| -DARROW_JSON=ON \ |
| -DARROW_MIMALLOC=ON \ |
| -DARROW_PARQUET=ON \ |
| -DARROW_S3=ON \ |
| -DARROW_AZURE=ON \ |
| -DARROW_WITH_BROTLI=ON \ |
| -DARROW_WITH_BZ2=ON \ |
| -DARROW_WITH_LZ4=ON \ |
| -DARROW_WITH_SNAPPY=ON \ |
| -DARROW_WITH_ZLIB=ON \ |
| -DARROW_WITH_ZSTD=ON \ |
| .. |
| ``` |
| </p> |
| </details> |
| |
| ## Installing a version of the R package with a specific git reference |
| |
| If you need an arrow installation from a specific repository or git reference, on most platforms except Windows, you can run: |
| |
| ```{r} |
| remotes::install_github("apache/arrow/r", build = FALSE) |
| ``` |
| |
| The `build = FALSE` argument is important so that the installation can access the |
| C++ source in the `cpp/` directory in `apache/arrow`. |
| |
| As with other installation methods, setting the environment variables `LIBARROW_MINIMAL=false` and `ARROW_R_DEV=true` will provide a more full-featured version of Arrow and provide more verbose output, respectively. |
| |
| For example, to install from the (fictional) branch `bugfix` from `apache/arrow` you could run: |
| |
| ```r |
| Sys.setenv(LIBARROW_MINIMAL="false") |
| remotes::install_github("apache/arrow/r@bugfix", build = FALSE) |
| ``` |
| |
| Developers may wish to use this method of installing a specific commit |
| separate from another Arrow development environment or system installation |
| (e.g. we use this in [arrowbench](https://github.com/ursacomputing/arrowbench) |
| to install development versions of libarrow isolated from the system install). If |
| you already have libarrow installed system-wide, you may need to set |
| some additional variables in order to isolate this build from your system libraries: |
| |
| * Setting the environment variable `FORCE_BUNDLED_BUILD` to `true` will skip the `pkg-config` search for libarrow and attempt to build from the same source at the repository+ref given. |
| |
| * You may also need to set the Makevars `CPPFLAGS` and `LDFLAGS` to `""` in order to prevent the installation process from attempting to link to already installed system versions of libarrow. One way to do this temporarily is wrapping your `remotes::install_github()` call like so: |
| ```{r} |
| withr::with_makevars(list(CPPFLAGS = "", LDFLAGS = ""), remotes::install_github(...)) |
| ``` |
| |
| # Summary of environment variables |
| |
| * See the user-facing [article on installation](../install.html) for a large number of |
| environment variables that determine how the build works and what features |
| get built. |
| * `ARROW_OFFLINE_BUILD`: When set to `true`, the build script will not download |
| prebuilt the C++ library binary or, if needed, `cmake`. |
| It will turn off any features that require a download, unless they're available |
| in `ARROW_THIRDPARTY_DEPENDENCY_DIR` or the `tools/thirdparty_download/` subfolder. |
| `create_package_with_all_dependencies()` creates that subfolder. |
| |
| # Troubleshooting |
| |
| Note that after any change to libarrow, you must reinstall it and |
| run `make clean` or `git clean -fdx .` to remove any cached object code |
| in the `r/src/` directory before reinstalling the R package. This is |
| only necessary if you make changes to libarrow source; you do not |
| need to manually purge object files if you are only editing R or C++ |
| code inside `r/`. |
| |
| ## Arrow library - R package mismatches |
| |
| If libarrow and the R package have diverged, you will see errors like: |
| |
| ``` |
| Error: package or namespace load failed for ‘arrow' in dyn.load(file, DLLpath = DLLpath, ...): |
| unable to load shared object '/Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-r/00new/arrow/libs/arrow.so': |
| dlopen(/Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-r/00new/arrow/libs/arrow.so, 6): Symbol not found: __ZN5arrow2io16RandomAccessFile9ReadAsyncERKNS0_9IOContextExx |
| Referenced from: /Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-r/00new/arrow/libs/arrow.so |
| Expected in: flat namespace |
| in /Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-r/00new/arrow/libs/arrow.so |
| Error: loading failed |
| Execution halted |
| ERROR: loading failed |
| ``` |
| |
| To resolve this, try [rebuilding the Arrow library](#step-3-building-arrow). |
| |
| ## Multiple versions of libarrow |
| |
| If you are installing from a user-level directory, and you already have a |
| previous installation of libarrow in a system directory, you get you may get |
| errors like the following when you install the R package: |
| |
| ``` |
| Error: package or namespace load failed for ‘arrow' in dyn.load(file, DLLpath = DLLpath, ...): |
| unable to load shared object '/Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-r/00new/arrow/libs/arrow.so': |
| dlopen(/Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-r/00new/arrow/libs/arrow.so, 6): Library not loaded: /usr/local/lib/libarrow.400.dylib |
| Referenced from: /usr/local/lib/libparquet.400.dylib |
| Reason: image not found |
| ``` |
| |
| If this happens, you need to make sure that you don't let R link to your system |
| library when building arrow. You can do this a number of different ways: |
| |
| * Setting the `MAKEFLAGS` environment variable to `"LDFLAGS="` (see below for an example) this is the recommended way to accomplish this |
| * Using {withr}'s `with_makevars(list(LDFLAGS = ""), ...)` |
| * adding `LDFLAGS=` to your `~/.R/Makevars` file (the least recommended way, though it is a common debugging approach suggested online) |
| |
| ```{bash, save=run & !sys_install & macos, hide=TRUE} |
| # Setup troubleshooting section |
| # install a system-level arrow on macOS |
| brew install apache-arrow |
| ``` |
| |
| |
| ```{bash, save=run & !sys_install & ubuntu, hide=TRUE} |
| # Setup troubleshooting section |
| # install a system-level arrow on Ubuntu |
| sudo apt update |
| sudo apt install -y -V ca-certificates lsb-release wget |
| wget https://apache.jfrog.io/artifactory/arrow/$(lsb_release --id --short | tr 'A-Z' 'a-z')/apache-arrow-apt-source-latest-$(lsb_release --codename --short).deb |
| sudo apt install -y -V ./apache-arrow-apt-source-latest-$(lsb_release --codename --short).deb |
| sudo apt update |
| sudo apt install -y -V libarrow-dev |
| ``` |
| |
| ```{bash, save=run & !sys_install} |
| MAKEFLAGS="LDFLAGS=" R CMD INSTALL . |
| ``` |
| |
| ## `rpath` issues |
| |
| If the package fails to install/load with an error like this: |
| |
| ``` |
| ** testing if installed package can be loaded from temporary location |
| Error: package or namespace load failed for 'arrow' in dyn.load(file, DLLpath = DLLpath, ...): |
| unable to load shared object '/Users/you/R/00LOCK-r/00new/arrow/libs/arrow.so': |
| dlopen(/Users/you/R/00LOCK-r/00new/arrow/libs/arrow.so, 6): Library not loaded: @rpath/libarrow.14.dylib |
| ``` |
| |
| ensure that `-DARROW_INSTALL_NAME_RPATH=OFF` was passed (this is important on |
| macOS to prevent problems at link time and is a no-op on other platforms). |
| Alternatively, try setting the environment variable `R_LD_LIBRARY_PATH` to |
| wherever Arrow C++ was put in `make install`, e.g. `export |
| R_LD_LIBRARY_PATH=/usr/local/lib`, and retry installing the R package. |
| |
| When installing from source, if the R and C++ library versions do not |
| match, installation may fail. If you've previously installed the |
| libraries and want to upgrade the R package, you'll need to update the |
| Arrow C++ library first. |
| |
| For any other build/configuration challenges, see the [C++ developer |
| guide](https://arrow.apache.org/docs/developers/cpp/building.html). |
| |
| ## Other installation issues |
| |
| There are a number of scripts that are triggered when the arrow R package is installed. For package users who are not interacting with the underlying code, these should all just work without configuration and pull in the most complete pieces (e.g. official binaries that we host). However, knowing about these scripts can help package developers troubleshoot if things go wrong in them or things go wrong in an install. See [the article on R package installation](./install_details.html) for more information. |
| |