blob: a49441f09f45455f242c836ead3305af98f01d35 [file]
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#
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import pytest
import pyarrow as pa
from pyarrow import fs
try:
import pyarrow.parquet as pq
from pyarrow.tests.parquet.common import (_read_table, _test_dataframe,
_test_table, _range_integers)
except ImportError:
pq = None
try:
import pandas as pd
import pandas.testing as tm
except ImportError:
pd = tm = None
# Marks all of the tests in this module
# Ignore these with pytest ... -m 'not parquet'
pytestmark = pytest.mark.parquet
@pytest.mark.pandas
def test_parquet_incremental_file_build(tempdir):
df = _test_dataframe(100)
df['unique_id'] = 0
arrow_table = pa.Table.from_pandas(df, preserve_index=False)
out = pa.BufferOutputStream()
writer = pq.ParquetWriter(out, arrow_table.schema, version='2.6')
frames = []
for i in range(10):
df['unique_id'] = i
arrow_table = pa.Table.from_pandas(df, preserve_index=False)
writer.write_table(arrow_table)
frames.append(df.copy())
writer.close()
buf = out.getvalue()
result = _read_table(pa.BufferReader(buf))
expected = pd.concat(frames, ignore_index=True)
tm.assert_frame_equal(result.to_pandas(), expected)
def test_validate_schema_write_table(tempdir):
# ARROW-2926
simple_fields = [
pa.field('POS', pa.uint32()),
pa.field('desc', pa.string())
]
simple_schema = pa.schema(simple_fields)
# simple_table schema does not match simple_schema
simple_from_array = [pa.array([1]), pa.array(['bla'])]
simple_table = pa.Table.from_arrays(simple_from_array, ['POS', 'desc'])
path = tempdir / 'simple_validate_schema.parquet'
with pq.ParquetWriter(path, simple_schema,
version='2.6',
compression='snappy', flavor='spark') as w:
with pytest.raises(ValueError):
w.write_table(simple_table)
def test_parquet_invalid_writer(tempdir):
# avoid segfaults with invalid construction
with pytest.raises(TypeError):
some_schema = pa.schema([pa.field("x", pa.int32())])
pq.ParquetWriter(None, some_schema)
with pytest.raises(TypeError):
pq.ParquetWriter(tempdir / "some_path", None)
@pytest.mark.pandas
def test_parquet_writer_context_obj(tempdir):
df = _test_dataframe(100)
df['unique_id'] = 0
arrow_table = pa.Table.from_pandas(df, preserve_index=False)
out = pa.BufferOutputStream()
with pq.ParquetWriter(out, arrow_table.schema, version='2.6') as writer:
frames = []
for i in range(10):
df['unique_id'] = i
arrow_table = pa.Table.from_pandas(df, preserve_index=False)
writer.write_table(arrow_table)
frames.append(df.copy())
buf = out.getvalue()
result = _read_table(pa.BufferReader(buf))
expected = pd.concat(frames, ignore_index=True)
tm.assert_frame_equal(result.to_pandas(), expected)
@pytest.mark.pandas
def test_parquet_writer_context_obj_with_exception(tempdir):
df = _test_dataframe(100)
df['unique_id'] = 0
arrow_table = pa.Table.from_pandas(df, preserve_index=False)
out = pa.BufferOutputStream()
error_text = 'Artificial Error'
try:
with pq.ParquetWriter(out,
arrow_table.schema,
version='2.6') as writer:
frames = []
for i in range(10):
df['unique_id'] = i
arrow_table = pa.Table.from_pandas(df, preserve_index=False)
writer.write_table(arrow_table)
frames.append(df.copy())
if i == 5:
raise ValueError(error_text)
except Exception as e:
assert str(e) == error_text
buf = out.getvalue()
result = _read_table(pa.BufferReader(buf))
expected = pd.concat(frames, ignore_index=True)
tm.assert_frame_equal(result.to_pandas(), expected)
@pytest.mark.pandas
@pytest.mark.parametrize("filesystem", [
None,
fs.LocalFileSystem(),
])
def test_parquet_writer_write_wrappers(tempdir, filesystem):
df = _test_dataframe(100)
table = pa.Table.from_pandas(df, preserve_index=False)
batch = pa.RecordBatch.from_pandas(df, preserve_index=False)
path_table = str(tempdir / 'data_table.parquet')
path_batch = str(tempdir / 'data_batch.parquet')
with pq.ParquetWriter(
path_table, table.schema, filesystem=filesystem, version='2.6'
) as writer:
writer.write_table(table)
result = _read_table(path_table).to_pandas()
tm.assert_frame_equal(result, df)
with pq.ParquetWriter(
path_batch, table.schema, filesystem=filesystem, version='2.6'
) as writer:
writer.write_batch(batch)
result = _read_table(path_batch).to_pandas()
tm.assert_frame_equal(result, df)
with pq.ParquetWriter(
path_table, table.schema, filesystem=filesystem, version='2.6'
) as writer:
writer.write(table)
result = _read_table(path_table).to_pandas()
tm.assert_frame_equal(result, df)
with pq.ParquetWriter(
path_batch, table.schema, filesystem=filesystem, version='2.6'
) as writer:
writer.write(batch)
result = _read_table(path_batch).to_pandas()
tm.assert_frame_equal(result, df)
@pytest.mark.large_memory
@pytest.mark.pandas
def test_parquet_writer_chunk_size(tempdir):
default_chunk_size = 1024 * 1024
abs_max_chunk_size = 64 * 1024 * 1024
def check_chunk_size(data_size, chunk_size, expect_num_chunks):
table = pa.Table.from_arrays([
_range_integers(data_size, 'b')
], names=['x'])
if chunk_size is None:
pq.write_table(table, tempdir / 'test.parquet')
else:
pq.write_table(table, tempdir / 'test.parquet', row_group_size=chunk_size)
metadata = pq.read_metadata(tempdir / 'test.parquet')
expected_chunk_size = default_chunk_size if chunk_size is None else chunk_size
assert metadata.num_row_groups == expect_num_chunks
latched_chunk_size = min(expected_chunk_size, abs_max_chunk_size)
# First chunks should be full size
for chunk_idx in range(expect_num_chunks - 1):
assert metadata.row_group(chunk_idx).num_rows == latched_chunk_size
# Last chunk may be smaller
remainder = data_size - (expected_chunk_size * (expect_num_chunks - 1))
if remainder == 0:
assert metadata.row_group(
expect_num_chunks - 1).num_rows == latched_chunk_size
else:
assert metadata.row_group(expect_num_chunks - 1).num_rows == remainder
check_chunk_size(default_chunk_size * 2, default_chunk_size - 100, 3)
check_chunk_size(default_chunk_size * 2, default_chunk_size, 2)
check_chunk_size(default_chunk_size * 2, default_chunk_size + 100, 2)
check_chunk_size(default_chunk_size + 100, default_chunk_size + 100, 1)
# Even though the chunk size requested is large enough it will be capped
# by the absolute max chunk size
check_chunk_size(abs_max_chunk_size * 2, abs_max_chunk_size * 2, 2)
# These tests don't pass a chunk_size to write_table and so the chunk size
# should be default_chunk_size
check_chunk_size(default_chunk_size, None, 1)
check_chunk_size(default_chunk_size + 1, None, 2)
@pytest.mark.pandas
@pytest.mark.parametrize("filesystem", [
None,
fs.LocalFileSystem(),
])
def test_parquet_writer_filesystem_local(tempdir, filesystem):
df = _test_dataframe(100)
table = pa.Table.from_pandas(df, preserve_index=False)
path = str(tempdir / 'data.parquet')
with pq.ParquetWriter(
path, table.schema, filesystem=filesystem, version='2.6'
) as writer:
writer.write_table(table)
result = _read_table(path).to_pandas()
tm.assert_frame_equal(result, df)
@pytest.mark.pandas
@pytest.mark.s3
def test_parquet_writer_filesystem_s3(s3_example_fs):
df = _test_dataframe(100)
table = pa.Table.from_pandas(df, preserve_index=False)
fs, uri, path = s3_example_fs
with pq.ParquetWriter(
path, table.schema, filesystem=fs, version='2.6'
) as writer:
writer.write_table(table)
result = _read_table(uri).to_pandas()
tm.assert_frame_equal(result, df)
@pytest.mark.pandas
@pytest.mark.s3
def test_parquet_writer_filesystem_s3_uri(s3_example_fs):
df = _test_dataframe(100)
table = pa.Table.from_pandas(df, preserve_index=False)
fs, uri, path = s3_example_fs
with pq.ParquetWriter(uri, table.schema, version='2.6') as writer:
writer.write_table(table)
result = _read_table(path, filesystem=fs).to_pandas()
tm.assert_frame_equal(result, df)
@pytest.mark.pandas
@pytest.mark.s3
def test_parquet_writer_filesystem_s3fs(s3_example_s3fs):
df = _test_dataframe(100)
table = pa.Table.from_pandas(df, preserve_index=False)
fs, directory = s3_example_s3fs
path = directory + "/test.parquet"
with pq.ParquetWriter(
path, table.schema, filesystem=fs, version='2.6'
) as writer:
writer.write_table(table)
result = _read_table(path, filesystem=fs).to_pandas()
tm.assert_frame_equal(result, df)
@pytest.mark.numpy
def test_parquet_writer_filesystem_buffer_raises():
table = _test_table(100)
filesystem = fs.LocalFileSystem()
# Should raise ValueError when filesystem is passed with file-like object
with pytest.raises(ValueError, match="specified path is file-like"):
pq.ParquetWriter(
pa.BufferOutputStream(), table.schema, filesystem=filesystem
)
def test_parquet_writer_store_schema(tempdir):
table = pa.table({'a': [1, 2, 3]})
# default -> write schema information
path1 = tempdir / 'test_with_schema.parquet'
with pq.ParquetWriter(path1, table.schema) as writer:
writer.write_table(table)
meta = pq.read_metadata(path1)
assert b'ARROW:schema' in meta.metadata
assert meta.metadata[b'ARROW:schema']
# disable adding schema information
path2 = tempdir / 'test_without_schema.parquet'
with pq.ParquetWriter(path2, table.schema, store_schema=False) as writer:
writer.write_table(table)
meta = pq.read_metadata(path2)
assert meta.metadata is None
def test_parquet_writer_append_key_value_metadata(tempdir):
table = pa.Table.from_arrays([pa.array([], type='int32')], ['f0'])
path = tempdir / 'metadata.parquet'
with pq.ParquetWriter(path, table.schema) as writer:
writer.write_table(table)
writer.add_key_value_metadata({'key1': '1', 'key2': 'x'})
writer.add_key_value_metadata({'key2': '2', 'key3': '3'})
reader = pq.ParquetFile(path)
metadata = reader.metadata.metadata
assert metadata[b'key1'] == b'1'
assert metadata[b'key2'] == b'2'
assert metadata[b'key3'] == b'3'
def test_parquet_content_defined_chunking(tempdir):
table = pa.table({'a': range(100_000)})
# use PLAIN encoding because we compare the overall size of the row groups
# which would vary depending on the encoding making the assertions wrong
pq.write_table(table, tempdir / 'unchunked.parquet',
use_dictionary=False,
column_encoding="PLAIN")
pq.write_table(table, tempdir / 'chunked-default.parquet',
use_dictionary=False,
column_encoding="PLAIN",
use_content_defined_chunking=True)
pq.write_table(table, tempdir / 'chunked-custom.parquet',
use_dictionary=False,
column_encoding="PLAIN",
use_content_defined_chunking={"min_chunk_size": 32_768,
"max_chunk_size": 65_536})
# the data must be the same
unchunked = pq.read_table(tempdir / 'unchunked.parquet')
chunked_default = pq.read_table(tempdir / 'chunked-default.parquet')
chunked_custom = pq.read_table(tempdir / 'chunked-custom.parquet')
assert unchunked.equals(chunked_default)
assert unchunked.equals(chunked_custom)
# number of row groups and their sizes are not affected by content defined chunking
unchunked_metadata = pq.read_metadata(tempdir / 'unchunked.parquet')
chunked_default_metadata = pq.read_metadata(tempdir / 'chunked-default.parquet')
chunked_custom_metadata = pq.read_metadata(tempdir / 'chunked-custom.parquet')
assert unchunked_metadata.num_row_groups == chunked_default_metadata.num_row_groups
assert unchunked_metadata.num_row_groups == chunked_custom_metadata.num_row_groups
for i in range(unchunked_metadata.num_row_groups):
rg_unchunked = unchunked_metadata.row_group(i)
rg_chunked_default = chunked_default_metadata.row_group(i)
rg_chunked_custom = chunked_custom_metadata.row_group(i)
assert rg_unchunked.num_rows == rg_chunked_default.num_rows
assert rg_unchunked.num_rows == rg_chunked_custom.num_rows
# since PageReader is not exposed we cannot inspect the page sizes
# so just check that the total byte size is different
assert rg_unchunked.total_byte_size < rg_chunked_default.total_byte_size
assert rg_unchunked.total_byte_size < rg_chunked_custom.total_byte_size
assert rg_chunked_default.total_byte_size < rg_chunked_custom.total_byte_size
def test_parquet_content_defined_chunking_parameters(tempdir):
table = pa.table({'a': range(100)})
path = tempdir / 'chunked-invalid.parquet'
# it raises OSError, not ideal but this is how parquet exceptions are handled
# currently
msg = "max_chunk_size must be greater than min_chunk_size"
with pytest.raises(Exception, match=msg):
cdc_options = {"min_chunk_size": 65_536, "max_chunk_size": 32_768}
pq.write_table(table, path, use_content_defined_chunking=cdc_options)
cases = [
(
{"min_chunk_size": 64 * 1024, "unknown_option": True},
"Unknown options in 'use_content_defined_chunking': {'unknown_option'}"
),
(
{"min_chunk_size": 64 * 1024},
"Missing options in 'use_content_defined_chunking': {'max_chunk_size'}"
),
(
{"max_chunk_size": 64 * 1024},
"Missing options in 'use_content_defined_chunking': {'min_chunk_size'}"
)
]
for cdc_options, msg in cases:
with pytest.raises(ValueError, match=msg):
pq.write_table(table, path, use_content_defined_chunking=cdc_options)
# using the default parametrization
pq.write_table(table, path, use_content_defined_chunking=True)
# using min_chunk_size and max_chunk_size
cdc_options = {"min_chunk_size": 32_768, "max_chunk_size": 65_536}
pq.write_table(table, path, use_content_defined_chunking=cdc_options)
# using min_chunk_size, max_chunk_size and norm_level
cdc_options = {"min_chunk_size": 32_768, "max_chunk_size": 65_536, "norm_level": 1}
pq.write_table(table, path, use_content_defined_chunking=cdc_options)
@pytest.mark.parametrize("time_type, time_unit", [
(pa.time32, "s"),
(pa.time32, "ms"),
(pa.time64, "us"),
(pa.time64, "ns"),
])
@pytest.mark.parametrize("utc_flag_val", [False, True])
def test_arrow_writer_props_time_adjusted_to_utc(
tempdir,
utc_flag_val,
time_type,
time_unit,
):
# GH-47441
filename = tempdir / "time_adjusted_to_utc.parquet"
time_values = [0, 123, 10_000, 86_399]
table = pa.table({
"time_col": pa.array(time_values, type=time_type(time_unit)),
})
schema = pa.schema([
("time_col", time_type(time_unit)),
])
with pq.ParquetWriter(
where=filename,
schema=schema,
write_time_adjusted_to_utc=utc_flag_val,
) as writer:
writer.write_table(table)
result = pq.read_table(filename, schema=schema)
result.validate(full=True)
assert result.equals(table)
@pytest.mark.parametrize(
"max_rows_per_page",
[1, 10, 100, 1_000, None],
)
def test_writer_props_max_rows_per_page(tempdir, max_rows_per_page):
# GH-48096
filename = tempdir / "max_rows_per_page.parquet"
table = pa.table({
"x": pa.array([1, 2, 3, 4, 5, 6, 7], type=pa.int8()),
"y": pa.array([11.0, 12.0, 13.0, 14.0, 15.0, 16.0, 17.0], type=pa.float16()),
})
schema = pa.schema([
("x", pa.int8()),
("y", pa.float16()),
])
with pq.ParquetWriter(
where=filename,
schema=schema,
max_rows_per_page=max_rows_per_page,
) as writer:
writer.write_table(table)
result = pq.read_table(filename, schema=schema)
result.validate(full=True)
assert result.equals(table)
def test_writer_props_max_rows_per_page_file_size(tempdir):
# GH-48096
table = pa.table({
"x": pa.array(range(1_000_000))
})
local = fs.LocalFileSystem()
file_infos = []
for max_rows in (1_000, 10_000):
path = f"{tempdir}/max_rows_per_page_{max_rows}.parquet"
with pq.ParquetWriter(
where=path,
schema=table.schema,
max_rows_per_page=max_rows,
) as writer:
writer.write_table(table)
file_infos.append(local.get_file_info(path))
# A smaller maximum rows parameter should produce a larger file
assert file_infos[0].size > file_infos[1].size