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| <meta name="description" content="Provides an R interface to the nanoarrow C library and the Apache Arrow application binary interface. Functions to import and export ArrowArray, ArrowSchema, and ArrowArrayStream C structures to and from R objects are provided alongside helpers to facilitate zero-copy data transfer among R bindings to libraries implementing the Arrow C data interface."> |
| <meta property="og:description" content="Provides an R interface to the nanoarrow C library and the Apache Arrow application binary interface. Functions to import and export ArrowArray, ArrowSchema, and ArrowArrayStream C structures to and from R objects are provided alongside helpers to facilitate zero-copy data transfer among R bindings to libraries implementing the Arrow C data interface."> |
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| <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.5.0.9000</small> |
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| <div class="page-header"><h1 id="nanoarrow">nanoarrow<a class="anchor" aria-label="anchor" href="#nanoarrow"></a> |
| </h1></div> |
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| <p>The goal of nanoarrow is to provide minimal useful bindings to the <a href="https://arrow.apache.org/docs/format/CDataInterface.html" class="external-link">Arrow C Data</a> and <a href="https://arrow.apache.org/docs/format/CStreamInterface.html" class="external-link">Arrow C Stream</a> interfaces using the <a href="https://arrow.apache.org/nanoarrow/" class="external-link">nanoarrow C library</a>.</p> |
| <div class="section level2"> |
| <h2 id="installation">Installation<a class="anchor" aria-label="anchor" href="#installation"></a> |
| </h2> |
| <p>You can install the released version of nanoarrow from <a href="https://cran.r-project.org/" class="external-link">CRAN</a> with:</p> |
| <div class="sourceCode" id="cb1"><pre class="downlit sourceCode r"> |
| <code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/install.packages.html" class="external-link">install.packages</a></span><span class="op">(</span><span class="st">"nanoarrow"</span><span class="op">)</span></span></code></pre></div> |
| <p>You can install the development version of nanoarrow from <a href="https://github.com/" class="external-link">GitHub</a> with:</p> |
| <div class="sourceCode" id="cb2"><pre class="downlit sourceCode r"> |
| <code class="sourceCode R"><span><span class="co"># install.packages("remotes")</span></span> |
| <span><span class="fu">remotes</span><span class="fu">::</span><span class="fu">install_github</span><span class="op">(</span><span class="st">"apache/arrow-nanoarrow/r"</span><span class="op">)</span></span></code></pre></div> |
| <p>If you can load the package, you’re good to go!</p> |
| <div class="sourceCode" id="cb3"><pre class="downlit sourceCode r"> |
| <code class="sourceCode R"><span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va"><a href="https://arrow.apache.org/nanoarrow/latest/r/" class="external-link">nanoarrow</a></span><span class="op">)</span></span></code></pre></div> |
| </div> |
| <div class="section level2"> |
| <h2 id="example">Example<a class="anchor" aria-label="anchor" href="#example"></a> |
| </h2> |
| <p>The Arrow C Data and Arrow C Stream interfaces are comprised of three structures: the <code>ArrowSchema</code> which represents a data type of an array, the <code>ArrowArray</code> which represents the values of an array, and an <code>ArrowArrayStream</code>, which represents zero or more <code>ArrowArray</code>s with a common <code>ArrowSchema</code>. All three can be wrapped by R objects using the nanoarrow R package.</p> |
| <div class="section level3"> |
| <h3 id="schemas">Schemas<a class="anchor" aria-label="anchor" href="#schemas"></a> |
| </h3> |
| <p>Use <code><a href="reference/as_nanoarrow_schema.html">infer_nanoarrow_schema()</a></code> to get the ArrowSchema object that corresponds to a given R vector type; use <code><a href="reference/as_nanoarrow_schema.html">as_nanoarrow_schema()</a></code> to convert an object from some other data type representation (e.g., an arrow R package <code>DataType</code> like <code><a href="https://arrow.apache.org/docs/r/reference/data-type.html" class="external-link">arrow::int32()</a></code>); or use <code>na_XXX()</code> functions to construct them.</p> |
| <div class="sourceCode" id="cb4"><pre class="downlit sourceCode r"> |
| <code class="sourceCode R"><span><span class="fu"><a href="reference/as_nanoarrow_schema.html">infer_nanoarrow_schema</a></span><span class="op">(</span><span class="fl">1</span><span class="op">:</span><span class="fl">5</span><span class="op">)</span></span> |
| <span><span class="co">#> <nanoarrow_schema int32></span></span> |
| <span><span class="co">#> $ format : chr "i"</span></span> |
| <span><span class="co">#> $ name : chr ""</span></span> |
| <span><span class="co">#> $ metadata : list()</span></span> |
| <span><span class="co">#> $ flags : int 2</span></span> |
| <span><span class="co">#> $ children : list()</span></span> |
| <span><span class="co">#> $ dictionary: NULL</span></span> |
| <span><span class="fu"><a href="reference/as_nanoarrow_schema.html">as_nanoarrow_schema</a></span><span class="op">(</span><span class="fu">arrow</span><span class="fu">::</span><span class="fu"><a href="https://arrow.apache.org/docs/r/reference/schema.html" class="external-link">schema</a></span><span class="op">(</span>col1 <span class="op">=</span> <span class="fu">arrow</span><span class="fu">::</span><span class="fu"><a href="https://arrow.apache.org/docs/r/reference/data-type.html" class="external-link">float64</a></span><span class="op">(</span><span class="op">)</span><span class="op">)</span><span class="op">)</span></span> |
| <span><span class="co">#> <nanoarrow_schema struct></span></span> |
| <span><span class="co">#> $ format : chr "+s"</span></span> |
| <span><span class="co">#> $ name : chr ""</span></span> |
| <span><span class="co">#> $ metadata : list()</span></span> |
| <span><span class="co">#> $ flags : int 0</span></span> |
| <span><span class="co">#> $ children :List of 1</span></span> |
| <span><span class="co">#> ..$ col1:<nanoarrow_schema double></span></span> |
| <span><span class="co">#> .. ..$ format : chr "g"</span></span> |
| <span><span class="co">#> .. ..$ name : chr "col1"</span></span> |
| <span><span class="co">#> .. ..$ metadata : list()</span></span> |
| <span><span class="co">#> .. ..$ flags : int 2</span></span> |
| <span><span class="co">#> .. ..$ children : list()</span></span> |
| <span><span class="co">#> .. ..$ dictionary: NULL</span></span> |
| <span><span class="co">#> $ dictionary: NULL</span></span> |
| <span><span class="fu"><a href="reference/na_type.html">na_int64</a></span><span class="op">(</span><span class="op">)</span></span> |
| <span><span class="co">#> <nanoarrow_schema int64></span></span> |
| <span><span class="co">#> $ format : chr "l"</span></span> |
| <span><span class="co">#> $ name : chr ""</span></span> |
| <span><span class="co">#> $ metadata : list()</span></span> |
| <span><span class="co">#> $ flags : int 2</span></span> |
| <span><span class="co">#> $ children : list()</span></span> |
| <span><span class="co">#> $ dictionary: NULL</span></span></code></pre></div> |
| </div> |
| <div class="section level3"> |
| <h3 id="arrays">Arrays<a class="anchor" aria-label="anchor" href="#arrays"></a> |
| </h3> |
| <p>Use <code><a href="reference/as_nanoarrow_array.html">as_nanoarrow_array()</a></code> to convert an object to an ArrowArray object:</p> |
| <div class="sourceCode" id="cb5"><pre class="downlit sourceCode r"> |
| <code class="sourceCode R"><span><span class="fu"><a href="reference/as_nanoarrow_array.html">as_nanoarrow_array</a></span><span class="op">(</span><span class="fl">1</span><span class="op">:</span><span class="fl">5</span><span class="op">)</span></span> |
| <span><span class="co">#> <nanoarrow_array int32[5]></span></span> |
| <span><span class="co">#> $ length : int 5</span></span> |
| <span><span class="co">#> $ null_count: int 0</span></span> |
| <span><span class="co">#> $ offset : int 0</span></span> |
| <span><span class="co">#> $ buffers :List of 2</span></span> |
| <span><span class="co">#> ..$ :<nanoarrow_buffer validity<bool>[0][0 b]> ``</span></span> |
| <span><span class="co">#> ..$ :<nanoarrow_buffer data<int32>[5][20 b]> `1 2 3 4 5`</span></span> |
| <span><span class="co">#> $ dictionary: NULL</span></span> |
| <span><span class="co">#> $ children : list()</span></span> |
| <span><span class="fu"><a href="reference/as_nanoarrow_array.html">as_nanoarrow_array</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/data.frame.html" class="external-link">data.frame</a></span><span class="op">(</span>col1 <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">1.1</span>, <span class="fl">2.2</span><span class="op">)</span><span class="op">)</span><span class="op">)</span></span> |
| <span><span class="co">#> <nanoarrow_array struct[2]></span></span> |
| <span><span class="co">#> $ length : int 2</span></span> |
| <span><span class="co">#> $ null_count: int 0</span></span> |
| <span><span class="co">#> $ offset : int 0</span></span> |
| <span><span class="co">#> $ buffers :List of 1</span></span> |
| <span><span class="co">#> ..$ :<nanoarrow_buffer validity<bool>[0][0 b]> ``</span></span> |
| <span><span class="co">#> $ children :List of 1</span></span> |
| <span><span class="co">#> ..$ col1:<nanoarrow_array double[2]></span></span> |
| <span><span class="co">#> .. ..$ length : int 2</span></span> |
| <span><span class="co">#> .. ..$ null_count: int 0</span></span> |
| <span><span class="co">#> .. ..$ offset : int 0</span></span> |
| <span><span class="co">#> .. ..$ buffers :List of 2</span></span> |
| <span><span class="co">#> .. .. ..$ :<nanoarrow_buffer validity<bool>[0][0 b]> ``</span></span> |
| <span><span class="co">#> .. .. ..$ :<nanoarrow_buffer data<double>[2][16 b]> `1.1 2.2`</span></span> |
| <span><span class="co">#> .. ..$ dictionary: NULL</span></span> |
| <span><span class="co">#> .. ..$ children : list()</span></span> |
| <span><span class="co">#> $ dictionary: NULL</span></span></code></pre></div> |
| <p>You can use <code><a href="https://rdrr.io/r/base/vector.html" class="external-link">as.vector()</a></code> or <code><a href="https://rdrr.io/r/base/as.data.frame.html" class="external-link">as.data.frame()</a></code> to get the R representation of the object back:</p> |
| <div class="sourceCode" id="cb6"><pre class="downlit sourceCode r"> |
| <code class="sourceCode R"><span><span class="va">array</span> <span class="op"><-</span> <span class="fu"><a href="reference/as_nanoarrow_array.html">as_nanoarrow_array</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/data.frame.html" class="external-link">data.frame</a></span><span class="op">(</span>col1 <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">1.1</span>, <span class="fl">2.2</span><span class="op">)</span><span class="op">)</span><span class="op">)</span></span> |
| <span><span class="fu"><a href="https://rdrr.io/r/base/as.data.frame.html" class="external-link">as.data.frame</a></span><span class="op">(</span><span class="va">array</span><span class="op">)</span></span> |
| <span><span class="co">#> col1</span></span> |
| <span><span class="co">#> 1 1.1</span></span> |
| <span><span class="co">#> 2 2.2</span></span></code></pre></div> |
| <p>Even though at the C level the ArrowArray is distinct from the ArrowSchema, at the R level we attach a schema wherever possible. You can access the attached schema using <code><a href="reference/as_nanoarrow_schema.html">infer_nanoarrow_schema()</a></code>:</p> |
| <div class="sourceCode" id="cb7"><pre class="downlit sourceCode r"> |
| <code class="sourceCode R"><span><span class="fu"><a href="reference/as_nanoarrow_schema.html">infer_nanoarrow_schema</a></span><span class="op">(</span><span class="va">array</span><span class="op">)</span></span> |
| <span><span class="co">#> <nanoarrow_schema struct></span></span> |
| <span><span class="co">#> $ format : chr "+s"</span></span> |
| <span><span class="co">#> $ name : chr ""</span></span> |
| <span><span class="co">#> $ metadata : list()</span></span> |
| <span><span class="co">#> $ flags : int 0</span></span> |
| <span><span class="co">#> $ children :List of 1</span></span> |
| <span><span class="co">#> ..$ col1:<nanoarrow_schema double></span></span> |
| <span><span class="co">#> .. ..$ format : chr "g"</span></span> |
| <span><span class="co">#> .. ..$ name : chr "col1"</span></span> |
| <span><span class="co">#> .. ..$ metadata : list()</span></span> |
| <span><span class="co">#> .. ..$ flags : int 2</span></span> |
| <span><span class="co">#> .. ..$ children : list()</span></span> |
| <span><span class="co">#> .. ..$ dictionary: NULL</span></span> |
| <span><span class="co">#> $ dictionary: NULL</span></span></code></pre></div> |
| </div> |
| <div class="section level3"> |
| <h3 id="array-streams">Array Streams<a class="anchor" aria-label="anchor" href="#array-streams"></a> |
| </h3> |
| <p>The easiest way to create an ArrowArrayStream is from a list of arrays or objects that can be converted to an array using <code><a href="reference/as_nanoarrow_array.html">as_nanoarrow_array()</a></code>:</p> |
| <div class="sourceCode" id="cb8"><pre class="downlit sourceCode r"> |
| <code class="sourceCode R"><span><span class="va">stream</span> <span class="op"><-</span> <span class="fu"><a href="reference/basic_array_stream.html">basic_array_stream</a></span><span class="op">(</span></span> |
| <span> <span class="fu"><a href="https://rdrr.io/r/base/list.html" class="external-link">list</a></span><span class="op">(</span></span> |
| <span> <span class="fu"><a href="https://rdrr.io/r/base/data.frame.html" class="external-link">data.frame</a></span><span class="op">(</span>col1 <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">1.1</span>, <span class="fl">2.2</span><span class="op">)</span><span class="op">)</span>,</span> |
| <span> <span class="fu"><a href="https://rdrr.io/r/base/data.frame.html" class="external-link">data.frame</a></span><span class="op">(</span>col1 <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">3.3</span>, <span class="fl">4.4</span><span class="op">)</span><span class="op">)</span></span> |
| <span> <span class="op">)</span></span> |
| <span><span class="op">)</span></span></code></pre></div> |
| <p>You can pull batches from the stream using the <code>$get_next()</code> method. The last batch will return <code>NULL</code>.</p> |
| <div class="sourceCode" id="cb9"><pre class="downlit sourceCode r"> |
| <code class="sourceCode R"><span><span class="va">stream</span><span class="op">$</span><span class="fu">get_next</span><span class="op">(</span><span class="op">)</span></span> |
| <span><span class="co">#> <nanoarrow_array struct[2]></span></span> |
| <span><span class="co">#> $ length : int 2</span></span> |
| <span><span class="co">#> $ null_count: int 0</span></span> |
| <span><span class="co">#> $ offset : int 0</span></span> |
| <span><span class="co">#> $ buffers :List of 1</span></span> |
| <span><span class="co">#> ..$ :<nanoarrow_buffer validity<bool>[0][0 b]> ``</span></span> |
| <span><span class="co">#> $ children :List of 1</span></span> |
| <span><span class="co">#> ..$ col1:<nanoarrow_array double[2]></span></span> |
| <span><span class="co">#> .. ..$ length : int 2</span></span> |
| <span><span class="co">#> .. ..$ null_count: int 0</span></span> |
| <span><span class="co">#> .. ..$ offset : int 0</span></span> |
| <span><span class="co">#> .. ..$ buffers :List of 2</span></span> |
| <span><span class="co">#> .. .. ..$ :<nanoarrow_buffer validity<bool>[0][0 b]> ``</span></span> |
| <span><span class="co">#> .. .. ..$ :<nanoarrow_buffer data<double>[2][16 b]> `1.1 2.2`</span></span> |
| <span><span class="co">#> .. ..$ dictionary: NULL</span></span> |
| <span><span class="co">#> .. ..$ children : list()</span></span> |
| <span><span class="co">#> $ dictionary: NULL</span></span> |
| <span><span class="va">stream</span><span class="op">$</span><span class="fu">get_next</span><span class="op">(</span><span class="op">)</span></span> |
| <span><span class="co">#> <nanoarrow_array struct[2]></span></span> |
| <span><span class="co">#> $ length : int 2</span></span> |
| <span><span class="co">#> $ null_count: int 0</span></span> |
| <span><span class="co">#> $ offset : int 0</span></span> |
| <span><span class="co">#> $ buffers :List of 1</span></span> |
| <span><span class="co">#> ..$ :<nanoarrow_buffer validity<bool>[0][0 b]> ``</span></span> |
| <span><span class="co">#> $ children :List of 1</span></span> |
| <span><span class="co">#> ..$ col1:<nanoarrow_array double[2]></span></span> |
| <span><span class="co">#> .. ..$ length : int 2</span></span> |
| <span><span class="co">#> .. ..$ null_count: int 0</span></span> |
| <span><span class="co">#> .. ..$ offset : int 0</span></span> |
| <span><span class="co">#> .. ..$ buffers :List of 2</span></span> |
| <span><span class="co">#> .. .. ..$ :<nanoarrow_buffer validity<bool>[0][0 b]> ``</span></span> |
| <span><span class="co">#> .. .. ..$ :<nanoarrow_buffer data<double>[2][16 b]> `3.3 4.4`</span></span> |
| <span><span class="co">#> .. ..$ dictionary: NULL</span></span> |
| <span><span class="co">#> .. ..$ children : list()</span></span> |
| <span><span class="co">#> $ dictionary: NULL</span></span> |
| <span><span class="va">stream</span><span class="op">$</span><span class="fu">get_next</span><span class="op">(</span><span class="op">)</span></span> |
| <span><span class="co">#> NULL</span></span></code></pre></div> |
| <p>You can pull all the batches into a <code><a href="https://rdrr.io/r/base/data.frame.html" class="external-link">data.frame()</a></code> by calling <code><a href="https://rdrr.io/r/base/as.data.frame.html" class="external-link">as.data.frame()</a></code> or <code><a href="https://rdrr.io/r/base/vector.html" class="external-link">as.vector()</a></code>:</p> |
| <div class="sourceCode" id="cb10"><pre class="downlit sourceCode r"> |
| <code class="sourceCode R"><span><span class="va">stream</span> <span class="op"><-</span> <span class="fu"><a href="reference/basic_array_stream.html">basic_array_stream</a></span><span class="op">(</span></span> |
| <span> <span class="fu"><a href="https://rdrr.io/r/base/list.html" class="external-link">list</a></span><span class="op">(</span></span> |
| <span> <span class="fu"><a href="https://rdrr.io/r/base/data.frame.html" class="external-link">data.frame</a></span><span class="op">(</span>col1 <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">1.1</span>, <span class="fl">2.2</span><span class="op">)</span><span class="op">)</span>,</span> |
| <span> <span class="fu"><a href="https://rdrr.io/r/base/data.frame.html" class="external-link">data.frame</a></span><span class="op">(</span>col1 <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">3.3</span>, <span class="fl">4.4</span><span class="op">)</span><span class="op">)</span></span> |
| <span> <span class="op">)</span></span> |
| <span><span class="op">)</span></span> |
| <span></span> |
| <span><span class="fu"><a href="https://rdrr.io/r/base/as.data.frame.html" class="external-link">as.data.frame</a></span><span class="op">(</span><span class="va">stream</span><span class="op">)</span></span> |
| <span><span class="co">#> col1</span></span> |
| <span><span class="co">#> 1 1.1</span></span> |
| <span><span class="co">#> 2 2.2</span></span> |
| <span><span class="co">#> 3 3.3</span></span> |
| <span><span class="co">#> 4 4.4</span></span></code></pre></div> |
| <p>After consuming a stream, you should call the release method as soon as you can. This lets the implementation of the stream release any resources (like open files) it may be holding in a more predictable way than waiting for the garbage collector to clean up the object.</p> |
| </div> |
| </div> |
| <div class="section level2"> |
| <h2 id="integration-with-the-arrow-package">Integration with the arrow package<a class="anchor" aria-label="anchor" href="#integration-with-the-arrow-package"></a> |
| </h2> |
| <p>The nanoarrow package implements <code><a href="reference/as_nanoarrow_schema.html">as_nanoarrow_schema()</a></code>, <code><a href="reference/as_nanoarrow_array.html">as_nanoarrow_array()</a></code>, and <code><a href="reference/as_nanoarrow_array_stream.html">as_nanoarrow_array_stream()</a></code> for most arrow package types. Similarly, it implements <code><a href="https://arrow.apache.org/docs/r/reference/as_arrow_array.html" class="external-link">arrow::as_arrow_array()</a></code>, <code><a href="https://arrow.apache.org/docs/r/reference/as_record_batch.html" class="external-link">arrow::as_record_batch()</a></code>, <code><a href="https://arrow.apache.org/docs/r/reference/as_arrow_table.html" class="external-link">arrow::as_arrow_table()</a></code>, <code><a href="https://arrow.apache.org/docs/r/reference/as_record_batch_reader.html" class="external-link">arrow::as_record_batch_reader()</a></code>, <code><a href="https://arrow.apache.org/docs/r/reference/infer_type.html" class="external-link">arrow::infer_type()</a></code>, <code><a href="https://arrow.apache.org/docs/r/reference/as_data_type.html" class="external-link">arrow::as_data_type()</a></code>, and <code><a href="https://arrow.apache.org/docs/r/reference/as_schema.html" class="external-link">arrow::as_schema()</a></code> for nanoarrow objects such that you can pass equivalent nanoarrow objects into many arrow functions and vice versa.</p> |
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| <h2 data-toc-skip>Developers</h2> |
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| <li>Apache Arrow <br><small class="roles"> Author, copyright holder </small> </li> |
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