| <?xml version="1.0" encoding="UTF-8"?> |
| <!-- |
| Licensed to the Apache Software Foundation (ASF) under one or more |
| contributor license agreements. See the NOTICE file distributed with |
| this work for additional information regarding copyright ownership. |
| The ASF licenses this file to You under the Apache License, Version 2.0 |
| (the "License"); you may not use this file except in compliance with |
| the License. You may obtain a copy of the License at |
| |
| http://www.apache.org/licenses/LICENSE-2.0 |
| |
| Unless required by applicable law or agreed to in writing, software |
| distributed under the License is distributed on an "AS IS" BASIS, |
| WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. |
| See the License for the specific language governing permissions and |
| limitations under the License. |
| --> |
| <oodt:ps xmlns:oodt="http://oodt.jpl.nasa.gov/xmlps/1.0" name="Test Query Handler" id="urn:oodt:xmlps:testps"> |
| <tables default="baseline"> |
| <table name="specimen" join="patient_id" tofld="participant_num"/> |
| </tables> |
| |
| <!-- |
| field: |
| |
| type (required): dyanmic or constant. If you choose dynamic, then the field |
| value is read from the row in the ResultSet returned |
| from the database. If constant, then each returned row |
| from the ResultSet is annotated with the value specified |
| in the 'value' attribute. |
| |
| dbname (optional): the name of the field within the underlying db. If not |
| specified, then assumed to be name |
| |
| name (required): the name of the attribute that you want returned |
| in the product server. |
| |
| table (optional): if provided, then the attribute a is selected as |
| 'table'.'a',and then returned. If omitted, the attribute |
| is assumed to come from the default table returned from the |
| PS query. |
| |
| value (optional): is necessary to provide if type='constant' is selected. |
| |
| scope (optional): limits the scope of a field's existance: acceptable values |
| are "query", which signifies that the field is only applicable when |
| translating queries: and "return", which signifies the field is only |
| applicable as a return field when converting database results into ERNEResults. |
| |
| --> |
| <field type="dynamic" dbname="specimen_collected" table="specimen" |
| name="SPECIMEN_COLLECTED_CODE" appendTableName="true"/> |
| <field type="constant" name="STUDY_SITE_ID" value="71" /> |
| <field type="constant" name="STUDY_PROTOCOL_ID" value="XX" /> |
| <field type="dynamic" dbname="" name="STUDY_PARTICIPANT_ID" /> |
| <field type="constant" name="SPECIMEN_STUDY-DESIGN_CODE" |
| value="prospective" /> |
| <field type="constant" name="SPECIMEN_CONTACT_NAME-TEXT" |
| value="Brendan Phalan" /> |
| <field type="constant" name="SPECIMEN_CONTACT-EMAIL_TEXT" |
| value="Brendan.Phalan@med.nyu.edu" scope="return"/> |
| <field type="constant" name="BASELINE_DEMOGRAPHICS-GENDER_CODE" |
| value="1" /> |
| <field type="constant" name="BASELINE_DEMOGRAPHICS-ETHNIC_CODE" |
| value="1" /> |
| <field type="constant" name="BASELINE_DEMOGRAPHICS_RACE_CODE" |
| value="1" /> |
| <field type="dynamic" name="BASELINE_DEMOGRAPHICS-RACE_OTHER_TEXT" /> |
| <field type="dynamic" name="BASELINE_DEMOGRAPHICS-BIRTH-YEAR_TEXT" /> |
| <field type="dynamic" name="BASELINE_SMOKE-REGULAR_1YEAR_CODE" /> |
| <field type="dynamic" |
| name="BASELINE_SMOKE-HX_BEGIN-AGE-REGULAR_VALUE" /> |
| <field type="dynamic" name="BASELINE_SMOKE-HX_AVERAGE-DAY_VALUE" /> |
| <field type="dynamic" name="BASELINE_SMOKE-HX_QUIT-AGE_VALUE" /> |
| <field type="dynamic" name="BASELINE_CANCER-CONFIRMATION_CODE" /> |
| <field type="constant" name="BASELINE_CANCER-ICD9-CODE" |
| value="UNKNOWN" /> |
| <field type="constant" name="BASELINE_CANCER-DIAGNOSIS_YEAR_TEXT" |
| value="UNKNOWN" /> |
| <field type="constant" name="BASELINE_CANCER-AGE-DIAGNOSIS_VALUE" |
| value="UNKNOWN" /> |
| <field type="dynamic" |
| name="BASELINE_FAMILY_CANCER-CONFIRMATION_CODE" /> |
| <field type="dynamic" name="BASELINE_FAMILY_CANCER-LOCATION_CODE" /> |
| <field type="constant" |
| name="BASELINE_FAMILY_CANCER-LOCATION-OTHER_TEXT" value="UNKNOWN" /> |
| <field type="dynamic" name="SPECIMEN_COLLECTION_TEXT" /> |
| <field type="dynamic" name="SPECIMEN_STORED_CODE" /> |
| <field type="dynamic" name="SPECIMEN_FINAL-STORE_CODE" /> |
| <field type="constant" name="SPECIMEN_FINAL-STORE-OTHER_TEXT" |
| value="UNKNOWN" /> |
| <field type="dynamic" name="SPECIMEN_DAY-COLLECTED_VALUE" /> |
| <field type="constant" name="SPECIMEN_DAY-CA-DIAGNOSIS_VALUE" |
| value="UNKNOWN" /> |
| <field type="dynamic" name="SPECIMEN_AGE-COLLECTED_VALUE" /> |
| <field type="dynamic" name="SPECIMEN_AMOUNT-STORED_VALUE" /> |
| <field type="constant" name="SPECIMEN_AMOUNT-STORED-UNIT_CODE" |
| value="1" /> |
| <field type="dynamic" name="SPECIMEN_AMOUNT_REMAINING_VALUE" /> |
| <field type="dynamic" name="SPECIMEN_AMOUNT_REMAINING_UNIT_CODE" /> |
| <field type="dynamic" name="SPECIMEN_CONCENTRATION_VALUE" /> |
| <field type="dynamic" name="SPECIMEN_AVAILABLE_CODE" /> |
| <field type="dynamic" name="SPECIMEN_TISSUE_ORGAN-SITE_CODE"> |
| <translate> |
| <func class="org.apache.oodt.xmlps.mapping.funcs.ReplaceFunc" orig="16" with="1" /> |
| </translate> |
| </field> |
| <field type="constant" name="SPECIMEN_TISSUE-ORGAN-SITE-OTHER_TEXT" |
| value="UNKNOWN" /> |
| <field type="constant" name="SPECIMEN_TISSUE_DEGREE-INVASIVE_CODE" |
| value="UNKNOWN" /> |
| <field type="constant" |
| name="SPECIMEN_TISSUE_DEGREE-INVASIVE-TUMOR_CODE" value="UNKNOWN" /> |
| <field type="constant" name="SPECIMEN_BONE-MARROW_BLAST_VALUE" |
| value="UNKNOWN" /> |
| <field type="constant" name="SPECIMEN_SPUTUM_PRESERVATIVE_CODE" |
| value="UNKNOWN" /> |
| <field type="constant" |
| name="SPECIMEN_SPUTUM-PRESERVATIVE-OTHER_TEXT" value="UNKOWN" /> |
| </oodt:ps> |
