Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/marmotta into develop
diff --git a/platform/marmotta-core/src/test/java/org/apache/marmotta/platform/core/test/ld/LinkedDataTest.java b/platform/marmotta-core/src/test/java/org/apache/marmotta/platform/core/test/ld/LinkedDataTest.java
index ce50ab2..cd62f51 100644
--- a/platform/marmotta-core/src/test/java/org/apache/marmotta/platform/core/test/ld/LinkedDataTest.java
+++ b/platform/marmotta-core/src/test/java/org/apache/marmotta/platform/core/test/ld/LinkedDataTest.java
@@ -17,14 +17,8 @@
 
 package org.apache.marmotta.platform.core.test.ld;
 
-import static com.jayway.restassured.RestAssured.expect;
-import static com.jayway.restassured.RestAssured.given;
-
-import java.io.IOException;
-import java.io.StringReader;
-import java.io.StringWriter;
-import java.util.Random;
-
+import com.fasterxml.jackson.databind.ObjectMapper;
+import com.jayway.restassured.RestAssured;
 import org.apache.commons.io.IOUtils;
 import org.apache.commons.lang.RandomStringUtils;
 import org.apache.marmotta.platform.core.api.triplestore.ContextService;
@@ -33,11 +27,7 @@
 import org.apache.marmotta.platform.core.webservices.resource.ContentWebService;
 import org.apache.marmotta.platform.core.webservices.resource.MetaWebService;
 import org.apache.marmotta.platform.core.webservices.resource.ResourceWebService;
-import org.junit.AfterClass;
-import org.junit.Assert;
-import org.junit.BeforeClass;
-import org.junit.Ignore;
-import org.junit.Test;
+import org.junit.*;
 import org.openrdf.model.Statement;
 import org.openrdf.model.URI;
 import org.openrdf.repository.Repository;
@@ -50,8 +40,13 @@
 import org.openrdf.rio.Rio;
 import org.openrdf.sail.memory.MemoryStore;
 
-import com.fasterxml.jackson.databind.ObjectMapper;
-import com.jayway.restassured.RestAssured;
+import java.io.IOException;
+import java.io.StringReader;
+import java.io.StringWriter;
+import java.util.Random;
+
+import static com.jayway.restassured.RestAssured.expect;
+import static com.jayway.restassured.RestAssured.given;
 
 /**
  * This test verifies the functionality of the Linked Data endpoint
@@ -228,6 +223,7 @@
             String body = data.toString();
 
             given()
+                    .log().ifValidationFails()
                     .header("Content-Type", format.getDefaultMIMEType())
                     .body(body.getBytes())
             .expect()
diff --git a/platform/marmotta-ldp/src/main/java/org/apache/marmotta/platform/ldp/api/LdpService.java b/platform/marmotta-ldp/src/main/java/org/apache/marmotta/platform/ldp/api/LdpService.java
index 306cfa3..8080106 100644
--- a/platform/marmotta-ldp/src/main/java/org/apache/marmotta/platform/ldp/api/LdpService.java
+++ b/platform/marmotta-ldp/src/main/java/org/apache/marmotta/platform/ldp/api/LdpService.java
@@ -25,6 +25,7 @@
 import org.apache.marmotta.platform.ldp.patch.parser.ParseException;
 import org.openrdf.model.Statement;
 import org.openrdf.model.URI;
+import org.openrdf.model.vocabulary.DCTERMS;
 import org.openrdf.repository.RepositoryConnection;
 import org.openrdf.repository.RepositoryException;
 import org.openrdf.rio.RDFFormat;
@@ -48,7 +49,12 @@
  */
 public interface LdpService {
 
-    public static final Set<URI> SERVER_MANAGED_PROPERTIES = new HashSet<>(Arrays.asList(LDP.contains));
+    public static final Set<URI> SERVER_MANAGED_PROPERTIES = new HashSet<>(Arrays.asList(
+            LDP.contains, DCTERMS.CREATED, DCTERMS.MODIFIED
+    ));
+    public static final List<RDFFormat> SERVER_PREFERED_RDF_FORMATS = Arrays.asList(
+            RDFFormat.TURTLE, RDFFormat.JSONLD, RDFFormat.RDFXML, RDFFormat.N3, RDFFormat.NTRIPLES
+    );
 
     public static enum InteractionModel {
         LDPR(LDP.Resource),
diff --git a/platform/marmotta-ldp/src/main/java/org/apache/marmotta/platform/ldp/services/LdpServiceImpl.java b/platform/marmotta-ldp/src/main/java/org/apache/marmotta/platform/ldp/services/LdpServiceImpl.java
index 80ddc25..bfdb07a 100644
--- a/platform/marmotta-ldp/src/main/java/org/apache/marmotta/platform/ldp/services/LdpServiceImpl.java
+++ b/platform/marmotta-ldp/src/main/java/org/apache/marmotta/platform/ldp/services/LdpServiceImpl.java
@@ -34,6 +34,7 @@
 import org.apache.marmotta.platform.ldp.patch.parser.ParseException;
 import org.apache.marmotta.platform.ldp.patch.parser.RdfPatchParserImpl;
 import org.apache.marmotta.platform.ldp.util.LdpUtils;
+import org.apache.marmotta.platform.ldp.util.ServerManagedPropertiesInterceptor;
 import org.apache.marmotta.platform.ldp.webservices.LdpWebService;
 import org.openrdf.model.*;
 import org.openrdf.model.impl.ValueFactoryImpl;
@@ -43,7 +44,6 @@
 import org.openrdf.repository.RepositoryException;
 import org.openrdf.repository.RepositoryResult;
 import org.openrdf.repository.event.base.InterceptingRepositoryConnectionWrapper;
-import org.openrdf.repository.event.base.RepositoryConnectionInterceptorAdapter;
 import org.openrdf.rio.*;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
@@ -58,7 +58,6 @@
 import java.io.InputStream;
 import java.io.OutputStream;
 import java.util.Date;
-import java.util.HashSet;
 import java.util.List;
 import java.util.Set;
 
@@ -380,8 +379,7 @@
         connection.add(resource, DCTERMS.modified, now, ldpContext);
 
         // Add the bodyContent
-        // TODO: find a better way to ingest n-triples (text/plain) while still supporting regular text files
-        final RDFFormat rdfFormat = ("text/plain".equals(type) ? null : Rio.getParserFormatForMIMEType(type));
+        final RDFFormat rdfFormat = LdpUtils.matchDefaultMIMEType(type, LdpUtils.filterAvailableParsers(SERVER_PREFERED_RDF_FORMATS), null);
         if (rdfFormat == null) {
             log.debug("Creating new LDP-NR, because no suitable RDF parser found for type {}", type);
             final Literal format = valueFactory.createLiteral(type);
@@ -411,8 +409,11 @@
             log.debug("Creating new LDP-RS, data provided as {}", rdfFormat.getName());
             connection.add(container, LDP.contains, resource, ldpContext);
 
-            // FIXME: We are (are we?) allowed to filter out server-managed properties here
-            connection.add(stream, resource.stringValue(), rdfFormat, resource);
+            final InterceptingRepositoryConnectionWrapper filtered = new InterceptingRepositoryConnectionWrapper(connection.getRepository(), connection);
+            final ServerManagedPropertiesInterceptor managedPropertiesInterceptor = new ServerManagedPropertiesInterceptor(ldpContext, resource);
+            filtered.addRepositoryConnectionInterceptor(managedPropertiesInterceptor);
+
+            filtered.add(stream, resource.stringValue(), rdfFormat, resource);
 
             return resource.stringValue();
         }
@@ -471,28 +472,12 @@
 
             connection.clear(resource);
             final InterceptingRepositoryConnectionWrapper filtered = new InterceptingRepositoryConnectionWrapper(connection.getRepository(), connection);
-            final Set<URI> deniedProperties = new HashSet<>();
-            filtered.addRepositoryConnectionInterceptor(new RepositoryConnectionInterceptorAdapter() {
-                @Override
-                public boolean add(RepositoryConnection conn, Resource subject, URI predicate, Value object, Resource... contexts) {
-                    try {
-                        if (connection.hasStatement(subject, predicate, object, true, ldpContext)) {
-                            // Ignore/Strip any triple that is already present in the mgnt-context (i.e. "unchanged" props).
-                            return true;
-                        } else if (resource.equals(subject) && SERVER_MANAGED_PROPERTIES.contains(predicate)) {
-                            // We do NOT allow changing server-managed properties.
-                            deniedProperties.add(predicate);
-                            return true;
-                        }
-                    } catch (RepositoryException e) {
-                        log.error("Error while filtering server managed properties: {}", e.getMessage());
-                    }
-                    return false;
-                }
-            });
+            final ServerManagedPropertiesInterceptor managedPropertiesInterceptor = new ServerManagedPropertiesInterceptor(ldpContext, resource);
+            filtered.addRepositoryConnectionInterceptor(managedPropertiesInterceptor);
 
             filtered.add(stream, resource.stringValue(), rdfFormat, resource);
 
+            final Set<URI> deniedProperties = managedPropertiesInterceptor.getDeniedProperties();
             if (!deniedProperties.isEmpty()) {
                 final URI prop = deniedProperties.iterator().next();
                 log.debug("Invalid property modification in update: <{}> is a server controlled property", prop);
diff --git a/platform/marmotta-ldp/src/main/java/org/apache/marmotta/platform/ldp/util/LdpUtils.java b/platform/marmotta-ldp/src/main/java/org/apache/marmotta/platform/ldp/util/LdpUtils.java
index 326f55f..fca8187 100644
--- a/platform/marmotta-ldp/src/main/java/org/apache/marmotta/platform/ldp/util/LdpUtils.java
+++ b/platform/marmotta-ldp/src/main/java/org/apache/marmotta/platform/ldp/util/LdpUtils.java
@@ -18,9 +18,11 @@
 package org.apache.marmotta.platform.ldp.util;
 
 import info.aduna.iteration.CloseableIteration;
+import info.aduna.lang.FileFormat;
 import org.apache.commons.lang3.StringUtils;
 import org.apache.marmotta.commons.vocabulary.LDP;
 import org.apache.marmotta.commons.vocabulary.XSD;
+import org.apache.marmotta.platform.ldp.api.LdpService;
 import org.apache.marmotta.platform.ldp.api.Preference;
 import org.apache.marmotta.platform.ldp.webservices.PreferHeader;
 import org.apache.tika.mime.MimeTypeException;
@@ -31,16 +33,15 @@
 import org.openrdf.model.vocabulary.DCTERMS;
 import org.openrdf.model.vocabulary.RDF;
 import org.openrdf.repository.RepositoryException;
-import org.openrdf.rio.RDFFormat;
-import org.openrdf.rio.RDFHandlerException;
-import org.openrdf.rio.RDFParserRegistry;
-import org.openrdf.rio.RDFWriter;
+import org.openrdf.rio.*;
 import org.slf4j.Logger;
 
 import javax.ws.rs.core.MediaType;
 import java.net.MalformedURLException;
 import java.net.URISyntaxException;
-import java.util.Set;
+import java.util.ArrayList;
+import java.util.Collection;
+import java.util.List;
 
 /**
  * Various Util-Methods for the {@link org.apache.marmotta.platform.ldp.api.LdpService}.
@@ -133,7 +134,7 @@
     }
 
     public static String getAcceptPostHeader(String extraFormats) {
-        final Set<RDFFormat> rdfFormats = RDFParserRegistry.getInstance().getKeys();
+        final Collection<RDFFormat> rdfFormats = filterAvailableParsers(LdpService.SERVER_PREFERED_RDF_FORMATS);
         final StringBuilder sb = new StringBuilder();
         for (RDFFormat rdfFormat : rdfFormats) {
             sb.append(rdfFormat.getDefaultMIMEType());
@@ -147,6 +148,50 @@
         return sb.toString();
     }
 
+    /**
+     * Tries to match the specified MIME type with the MIME types of the supplied
+     * file formats.
+     * This method does exactly the same as {@link info.aduna.lang.FileFormat#matchMIMEType(String, Iterable)}
+     * but only considers the <strong>default</strong> mimeTypes.
+     *
+     * @param mimeType A MIME type, e.g. "text/plain".
+     * @param fileFormats The file formats to match the MIME type against.
+     * @return A FileFormat object if the MIME type was recognized, or {@code null} otherwise.
+     *
+     * @see #matchDefaultMIMEType(String, Iterable, info.aduna.lang.FileFormat)
+     * @see info.aduna.lang.FileFormat#matchMIMEType(String, Iterable)
+     *
+     */
+    public static <FF extends FileFormat> FF matchDefaultMIMEType(String mimeType, Iterable<FF> fileFormats) {
+        return matchDefaultMIMEType(mimeType, fileFormats, null);
+    }
+
+    /**
+     * Tries to match the specified MIME type with the default MIME types of the supplied
+     * file formats. The supplied fallback format will be returned when no
+     * matching format was found.
+     * This method does exactly the same as {@link info.aduna.lang.FileFormat#matchMIMEType(String, Iterable, info.aduna.lang.FileFormat)}
+     * but only considers the <strong>default</strong> mimeTypes.
+     *
+     * @param mimeType A MIME type, e.g. "text/plain".
+     * @param fileFormats The file formats to match the MIME type against.
+     * @param fallback The file format to return if no matching format can be found.
+     * @return A FileFormat that matches the MIME type, or the fallback format if the extension was not recognized.
+     *
+     * @see info.aduna.lang.FileFormat#matchMIMEType(String, Iterable, info.aduna.lang.FileFormat)
+     *
+     */
+    public static <FF extends FileFormat> FF matchDefaultMIMEType(String mimeType, Iterable<FF> fileFormats,
+                                                           FF fallback) {
+        // Try to match with the default MIME type
+        for (FF fileFormat : fileFormats) {
+            if (fileFormat.hasDefaultMIMEType(mimeType)) {
+                return fileFormat;
+            }
+        }
+        return fallback;
+    }
+
     public static String getContainer(String resource) throws MalformedURLException, URISyntaxException {
         final int fragmentIndex = resource.indexOf('#');
         if (fragmentIndex >= 0) {
@@ -190,6 +235,29 @@
         return null;
     }
 
+    public static List<RDFFormat> filterAvailableParsers(List<RDFFormat> rdfFormats) {
+        final List<RDFFormat> result = new ArrayList<>();
+        final RDFParserRegistry parserRegistry = RDFParserRegistry.getInstance();
+        for (RDFFormat f: rdfFormats) {
+            if (parserRegistry.has(f)) {
+                result.add(f);
+            }
+        }
+        return result;
+    }
+
+    public static List<RDFFormat> filterAvailableWriters(List<RDFFormat> rdfFormats) {
+        final List<RDFFormat> result = new ArrayList<>();
+        final RDFWriterRegistry writerRegistry = RDFWriterRegistry.getInstance();
+        for (RDFFormat f: rdfFormats) {
+            if (writerRegistry.has(f)) {
+                result.add(f);
+            }
+        }
+        return result;
+    }
+
+
     private LdpUtils() {
         // Static access only
     }
diff --git a/platform/marmotta-ldp/src/main/java/org/apache/marmotta/platform/ldp/util/ServerManagedPropertiesInterceptor.java b/platform/marmotta-ldp/src/main/java/org/apache/marmotta/platform/ldp/util/ServerManagedPropertiesInterceptor.java
new file mode 100644
index 0000000..54eeadb
--- /dev/null
+++ b/platform/marmotta-ldp/src/main/java/org/apache/marmotta/platform/ldp/util/ServerManagedPropertiesInterceptor.java
@@ -0,0 +1,95 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one or more
+ * contributor license agreements.  See the NOTICE file distributed with
+ * this work for additional information regarding copyright ownership.
+ * The ASF licenses this file to You under the Apache License, Version 2.0
+ * (the "License"); you may not use this file except in compliance with
+ * the License.  You may obtain a copy of the License at
+ *
+ *      http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package org.apache.marmotta.platform.ldp.util;
+
+import org.apache.marmotta.platform.ldp.api.LdpService;
+import org.openrdf.model.Resource;
+import org.openrdf.model.URI;
+import org.openrdf.model.Value;
+import org.openrdf.model.impl.StatementImpl;
+import org.openrdf.repository.RepositoryConnection;
+import org.openrdf.repository.RepositoryException;
+import org.openrdf.repository.event.base.RepositoryConnectionInterceptorAdapter;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+import java.util.Collections;
+import java.util.HashSet;
+import java.util.Set;
+
+/**
+ * A ConnectionInterceptor that filters out all write operations that happen to
+ * <li>the <strong>managed context</strong>, or</li>
+ * <li>use a <strong>managed property</strong></li>
+ */
+public class ServerManagedPropertiesInterceptor extends RepositoryConnectionInterceptorAdapter {
+
+    private final Logger log = LoggerFactory.getLogger(this.getClass());
+
+    private final URI managedContext;
+    private final Resource subject;
+    private final Set<? extends Value> managedProperties;
+    private final Set<URI> deniedProperties;
+
+    public ServerManagedPropertiesInterceptor(URI managedContext, Resource subject) {
+        this(managedContext, subject, LdpService.SERVER_MANAGED_PROPERTIES);
+    }
+
+    public ServerManagedPropertiesInterceptor(URI managedContext, Resource subject, Set<? extends Value> managedProperties) {
+        this.managedContext = managedContext;
+        this.subject = subject;
+        this.managedProperties = managedProperties;
+        deniedProperties = new HashSet<>();
+    }
+
+    @Override
+    public boolean add(RepositoryConnection conn, Resource subject, URI predicate, Value object, Resource... contexts) {
+        return isManaged(conn, subject, predicate, object, "ADD");
+    }
+
+    @Override
+    public boolean remove(RepositoryConnection conn, Resource subject, URI predicate, Value object, Resource... contexts) {
+        return isManaged(conn, subject, predicate, object, "DEL");
+    }
+
+    private boolean isManaged(RepositoryConnection conn, Resource subject, URI predicate, Value object, String operation) {
+        try {
+            if (conn.hasStatement(subject, predicate, object, true, managedContext)) {
+                // Ignore/Strip any triple that is already present in the mgmt-context (i.e. "unchanged" props).
+                if (log.isTraceEnabled()) {
+                    log.trace("[{}] filtering out statement that is already present in the managed context: {}", operation, new StatementImpl(subject, predicate, object));
+                }
+                return true;
+            } else if (this.subject.equals(subject) && managedProperties.contains(predicate)) {
+                // We do NOT allow changing server-managed properties.
+                if (log.isTraceEnabled()) {
+                    log.trace("[{}] filtering out statement with managed propterty {}: {}", operation, predicate, new StatementImpl(subject, predicate, object));
+                }
+                deniedProperties.add(predicate);
+                return true;
+            }
+        } catch (RepositoryException e) {
+            log.error("Error while filtering server managed properties: {}", e.getMessage());
+        }
+        return false;
+    }
+
+    public Set<URI> getDeniedProperties() {
+        return Collections.unmodifiableSet(deniedProperties);
+    }
+
+}
diff --git a/platform/marmotta-ldp/src/main/java/org/apache/marmotta/platform/ldp/webservices/LdpWebService.java b/platform/marmotta-ldp/src/main/java/org/apache/marmotta/platform/ldp/webservices/LdpWebService.java
index 92a799e..46b9cde 100644
--- a/platform/marmotta-ldp/src/main/java/org/apache/marmotta/platform/ldp/webservices/LdpWebService.java
+++ b/platform/marmotta-ldp/src/main/java/org/apache/marmotta/platform/ldp/webservices/LdpWebService.java
@@ -58,7 +58,7 @@
 import java.util.ArrayList;
 import java.util.Collections;
 import java.util.List;
-import java.util.UUID;
+import java.util.Locale;
 
 /**
  * Linked Data Platform web services.
@@ -107,17 +107,18 @@
     public LdpWebService() {
         producedRdfTypes = new ArrayList<>();
 
+        final List<RDFFormat> availableWriters = LdpUtils.filterAvailableWriters(LdpService.SERVER_PREFERED_RDF_FORMATS);
         for(RDFFormat format : RDFWriterRegistry.getInstance().getKeys()) {
             final String primaryQ;
-            if (format == RDFFormat.TURTLE) {
-                primaryQ = ";q=1.0";
-            } else if (format == RDFFormat.JSONLD) {
-                primaryQ = ";q=0.9";
-            } else if (format == RDFFormat.RDFXML) {
-                primaryQ = ";q=0.8";
-            } else {
+            final int idx = availableWriters.indexOf(format);
+            if (idx < 0) {
+                // not a prefered format
                 primaryQ = ";q=0.5";
+            } else {
+                // a prefered format
+                primaryQ = String.format(Locale.ENGLISH, ";q=%.1f", Math.max(1.0-(idx*0.1), 0.55));
             }
+
             final String secondaryQ = ";q=0.3";
             final List<String> mimeTypes = format.getMIMETypes();
             for (int i = 0; i < mimeTypes.size(); i++) {