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#-------------------------------------------------------------

# generates a two column matrix of categorical
# variables
# used to test systemds's chi-squared bivariate stat
# computation

# $1 is number of samples to generate
# $2 is number of categories for 1st categorical variable
# $3 is number of categories for 2nd categorical variable
# $4 is the file to write out the chi-squared statistic to
# $5 is the file to write out the generated data to

numSamples = $1
numCategories1 = $2
numCategories2 = $3

o = Rand(rows=numCategories1, cols=numCategories2, min=0.0, max=1.0, pdf="uniform", seed=0)
o = o / sum(o)

probs1 = rowSums(o)
probs1 = probs1 / sum(probs1)
probs2 = colSums(o)
probs2 = probs2 / sum(probs2)
e = probs1 %*% probs2

chisquared = sum((o-e)^2/e)
write(chisquared, $4, format="binary")

oCDF = Rand(rows=numCategories1, cols=numCategories2, min=0.0, max=0.0, pdf="uniform", seed=0)
for(i in 1:numCategories1){
	for(j in 1:numCategories2){
		if(i==1 & j==1){
			oCDF[i,j] = o[1,1]
		}
		if(i != 1 & j == 1){
			oCDF[i,j] = oCDF[i-1,numCategories2] + o[i,j]
		}
		if(j > 1){
			oCDF[i,j] = oCDF[i,j-1] + o[i,j]
		}
	}
}

one = Rand(rows=1, cols=1, min=1.0, max=1.0, pdf="uniform", seed=0)
data = Rand(rows=numSamples, cols=2, min=0.0, max=0.0, pdf="uniform", seed=0)
parfor(s in 1:numSamples){
	r_mat = Rand(rows=1, cols=1, min=0.0, max=1.0, pdf="uniform", seed=0)
	r = as.scalar(r_mat)

	cat1 = -1
	cat2 = -1
	continue = 1
	for(i in 1:numCategories1){
		for(j in 1:numCategories2){
			cdf = as.scalar(oCDF[i,j])
			if(continue == 1 & r <= cdf){
				cat1 = i
				cat2 = j
				continue = 0
			}
		}
	}
	
	data[s,1] = cat1*one
	data[s,2] = cat2*one
}
write(data, $5, format="binary")