| --- |
| layout: global |
| title: PySpark Usage Guide for Pandas with Apache Arrow |
| displayTitle: PySpark Usage Guide for Pandas with Apache Arrow |
| --- |
| |
| * Table of contents |
| {:toc} |
| |
| ## Apache Arrow in Spark |
| |
| Apache Arrow is an in-memory columnar data format that is used in Spark to efficiently transfer |
| data between JVM and Python processes. This currently is most beneficial to Python users that |
| work with Pandas/NumPy data. Its usage is not automatic and might require some minor |
| changes to configuration or code to take full advantage and ensure compatibility. This guide will |
| give a high-level description of how to use Arrow in Spark and highlight any differences when |
| working with Arrow-enabled data. |
| |
| ### Ensure PyArrow Installed |
| |
| If you install PySpark using pip, then PyArrow can be brought in as an extra dependency of the |
| SQL module with the command `pip install pyspark[sql]`. Otherwise, you must ensure that PyArrow |
| is installed and available on all cluster nodes. The current supported version is 0.8.0. |
| You can install using pip or conda from the conda-forge channel. See PyArrow |
| [installation](https://arrow.apache.org/docs/python/install.html) for details. |
| |
| ## Enabling for Conversion to/from Pandas |
| |
| Arrow is available as an optimization when converting a Spark DataFrame to a Pandas DataFrame |
| using the call `toPandas()` and when creating a Spark DataFrame from a Pandas DataFrame with |
| `createDataFrame(pandas_df)`. To use Arrow when executing these calls, users need to first set |
| the Spark configuration 'spark.sql.execution.arrow.enabled' to 'true'. This is disabled by default. |
| |
| In addition, optimizations enabled by 'spark.sql.execution.arrow.enabled' could fallback automatically |
| to non-Arrow optimization implementation if an error occurs before the actual computation within Spark. |
| This can be controlled by 'spark.sql.execution.arrow.fallback.enabled'. |
| |
| <div class="codetabs"> |
| <div data-lang="python" markdown="1"> |
| {% include_example dataframe_with_arrow python/sql/arrow.py %} |
| </div> |
| </div> |
| |
| Using the above optimizations with Arrow will produce the same results as when Arrow is not |
| enabled. Note that even with Arrow, `toPandas()` results in the collection of all records in the |
| DataFrame to the driver program and should be done on a small subset of the data. Not all Spark |
| data types are currently supported and an error can be raised if a column has an unsupported type, |
| see [Supported SQL Types](#supported-sql-types). If an error occurs during `createDataFrame()`, |
| Spark will fall back to create the DataFrame without Arrow. |
| |
| ## Pandas UDFs (a.k.a. Vectorized UDFs) |
| |
| Pandas UDFs are user defined functions that are executed by Spark using Arrow to transfer data and |
| Pandas to work with the data. A Pandas UDF is defined using the keyword `pandas_udf` as a decorator |
| or to wrap the function, no additional configuration is required. Currently, there are two types of |
| Pandas UDF: Scalar and Grouped Map. |
| |
| ### Scalar |
| |
| Scalar Pandas UDFs are used for vectorizing scalar operations. They can be used with functions such |
| as `select` and `withColumn`. The Python function should take `pandas.Series` as inputs and return |
| a `pandas.Series` of the same length. Internally, Spark will execute a Pandas UDF by splitting |
| columns into batches and calling the function for each batch as a subset of the data, then |
| concatenating the results together. |
| |
| The following example shows how to create a scalar Pandas UDF that computes the product of 2 columns. |
| |
| <div class="codetabs"> |
| <div data-lang="python" markdown="1"> |
| {% include_example scalar_pandas_udf python/sql/arrow.py %} |
| </div> |
| </div> |
| |
| ### Grouped Map |
| Grouped map Pandas UDFs are used with `groupBy().apply()` which implements the "split-apply-combine" pattern. |
| Split-apply-combine consists of three steps: |
| * Split the data into groups by using `DataFrame.groupBy`. |
| * Apply a function on each group. The input and output of the function are both `pandas.DataFrame`. The |
| input data contains all the rows and columns for each group. |
| * Combine the results into a new `DataFrame`. |
| |
| To use `groupBy().apply()`, the user needs to define the following: |
| * A Python function that defines the computation for each group. |
| * A `StructType` object or a string that defines the schema of the output `DataFrame`. |
| |
| The column labels of the returned `pandas.DataFrame` must either match the field names in the |
| defined output schema if specified as strings, or match the field data types by position if not |
| strings, e.g. integer indices. See [pandas.DataFrame](https://pandas.pydata.org/pandas-docs/stable/generated/pandas.DataFrame.html#pandas.DataFrame) |
| on how to label columns when constructing a `pandas.DataFrame`. |
| |
| Note that all data for a group will be loaded into memory before the function is applied. This can |
| lead to out of memory exceptions, especially if the group sizes are skewed. The configuration for |
| [maxRecordsPerBatch](#setting-arrow-batch-size) is not applied on groups and it is up to the user |
| to ensure that the grouped data will fit into the available memory. |
| |
| The following example shows how to use `groupby().apply()` to subtract the mean from each value in the group. |
| |
| <div class="codetabs"> |
| <div data-lang="python" markdown="1"> |
| {% include_example grouped_map_pandas_udf python/sql/arrow.py %} |
| </div> |
| </div> |
| |
| For detailed usage, please see [`pyspark.sql.functions.pandas_udf`](api/python/pyspark.sql.html#pyspark.sql.functions.pandas_udf) and |
| [`pyspark.sql.GroupedData.apply`](api/python/pyspark.sql.html#pyspark.sql.GroupedData.apply). |
| |
| ### Grouped Aggregate |
| |
| Grouped aggregate Pandas UDFs are similar to Spark aggregate functions. Grouped aggregate Pandas UDFs are used with `groupBy().agg()` and |
| [`pyspark.sql.Window`](api/python/pyspark.sql.html#pyspark.sql.Window). It defines an aggregation from one or more `pandas.Series` |
| to a scalar value, where each `pandas.Series` represents a column within the group or window. |
| |
| Note that this type of UDF does not support partial aggregation and all data for a group or window will be loaded into memory. Also, |
| only unbounded window is supported with Grouped aggregate Pandas UDFs currently. |
| |
| The following example shows how to use this type of UDF to compute mean with groupBy and window operations: |
| |
| <div class="codetabs"> |
| <div data-lang="python" markdown="1"> |
| {% include_example grouped_agg_pandas_udf python/sql/arrow.py %} |
| </div> |
| </div> |
| |
| For detailed usage, please see [`pyspark.sql.functions.pandas_udf`](api/python/pyspark.sql.html#pyspark.sql.functions.pandas_udf) |
| |
| ## Usage Notes |
| |
| ### Supported SQL Types |
| |
| Currently, all Spark SQL data types are supported by Arrow-based conversion except `MapType`, |
| `ArrayType` of `TimestampType`, and nested `StructType`. `BinaryType` is supported only when |
| installed PyArrow is equal to or higher then 0.10.0. |
| |
| ### Setting Arrow Batch Size |
| |
| Data partitions in Spark are converted into Arrow record batches, which can temporarily lead to |
| high memory usage in the JVM. To avoid possible out of memory exceptions, the size of the Arrow |
| record batches can be adjusted by setting the conf "spark.sql.execution.arrow.maxRecordsPerBatch" |
| to an integer that will determine the maximum number of rows for each batch. The default value is |
| 10,000 records per batch. If the number of columns is large, the value should be adjusted |
| accordingly. Using this limit, each data partition will be made into 1 or more record batches for |
| processing. |
| |
| ### Timestamp with Time Zone Semantics |
| |
| Spark internally stores timestamps as UTC values, and timestamp data that is brought in without |
| a specified time zone is converted as local time to UTC with microsecond resolution. When timestamp |
| data is exported or displayed in Spark, the session time zone is used to localize the timestamp |
| values. The session time zone is set with the configuration 'spark.sql.session.timeZone' and will |
| default to the JVM system local time zone if not set. Pandas uses a `datetime64` type with nanosecond |
| resolution, `datetime64[ns]`, with optional time zone on a per-column basis. |
| |
| When timestamp data is transferred from Spark to Pandas it will be converted to nanoseconds |
| and each column will be converted to the Spark session time zone then localized to that time |
| zone, which removes the time zone and displays values as local time. This will occur |
| when calling `toPandas()` or `pandas_udf` with timestamp columns. |
| |
| When timestamp data is transferred from Pandas to Spark, it will be converted to UTC microseconds. This |
| occurs when calling `createDataFrame` with a Pandas DataFrame or when returning a timestamp from a |
| `pandas_udf`. These conversions are done automatically to ensure Spark will have data in the |
| expected format, so it is not necessary to do any of these conversions yourself. Any nanosecond |
| values will be truncated. |
| |
| Note that a standard UDF (non-Pandas) will load timestamp data as Python datetime objects, which is |
| different than a Pandas timestamp. It is recommended to use Pandas time series functionality when |
| working with timestamps in `pandas_udf`s to get the best performance, see |
| [here](https://pandas.pydata.org/pandas-docs/stable/timeseries.html) for details. |