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<h1>Apache Kudu Troubleshooting</h1>
<div class="sect1">
<h2 id="_startup_errors"><a class="link" href="#_startup_errors">Startup Errors</a></h2>
<div class="sectionbody">
<div class="sect2">
<h3 id="req_hole_punching"><a class="link" href="#req_hole_punching">Errors During Hole Punching Test</a></h3>
<div class="paragraph">
<p>Kudu requires hole punching capabilities in order to be efficient. Hole punching support
depends upon your operation system kernel version and local filesystem implementation.</p>
</div>
<div class="ulist">
<ul>
<li>
<p>RHEL or CentOS 6.4 or later, patched to kernel version of 2.6.32-358 or later.
Unpatched RHEL or CentOS 6.4 does not include a kernel with support for hole punching.</p>
</li>
<li>
<p>Ubuntu 14.04 includes version 3.13 of the Linux kernel, which supports hole punching.</p>
</li>
<li>
<p>Newer versions of the ext4 and xfs filesystems support hole punching. Older versions
that do not support hole punching will cause Kudu to emit an error message such as the
following and to fail to start:</p>
<div class="listingblock">
<div class="content">
<pre>Error during hole punch test. The log block manager requires a
filesystem with hole punching support such as ext4 or xfs. On el6,
kernel version 2.6.32-358 or newer is required. To run without hole
punching (at the cost of some efficiency and scalability), reconfigure
Kudu to use the file block manager. Refer to the Kudu documentation for
more details. WARNING: the file block manager is not suitable for
production use and should be used only for small-scale evaluation and
development on systems where hole-punching is not available. It's
impossible to switch between block managers after data is written to the
server. Raw error message follows</pre>
</div>
</div>
</li>
</ul>
</div>
<div class="admonitionblock note">
<table>
<tr>
<td class="icon">
<i class="fa icon-note" title="Note"></i>
</td>
<td class="content">
ext4 mountpoints may actually be backed by ext2 or ext3 formatted devices, which do not
support hole punching. The hole punching test will fail when run on such filesystems. There
are several different ways to determine whether an ext4 mountpoint is backed by an ext2,
ext3, or ext4 formatted device; see <a href="https://unix.stackexchange.com/q/60723">this Stack
Exchange post</a> for details.
</td>
</tr>
</table>
</div>
<div class="paragraph">
<p><a href="administration.html#change_dir_config">Changing Directory Configurations</a> documentation.</p>
</div>
<div class="paragraph">
<p>Without hole punching support, the log block manager is unsafe to use. It won&#8217;t
ever delete blocks, and will consume ever more space on disk.</p>
</div>
<div class="paragraph">
<p>If you can&#8217;t use hole punching in your environment, you can still
try Kudu. Enable the file block manager instead of the log block manager by
adding the <code>--block_manager=file</code> flag to the commands you use to start the master
and tablet servers. The file block manager does not scale as well as the log block
manager.</p>
</div>
<div class="admonitionblock warning">
<table>
<tr>
<td class="icon">
<i class="fa icon-warning" title="Warning"></i>
</td>
<td class="content">
<div class="paragraph">
<p>The file block manager is known to scale and perform poorly, and should
only be used for small-scale evaluation and development, and only on systems
where hole punching is unavailable.</p>
</div>
<div class="paragraph">
<p>The file block manager uses one file per block. As multiple blocks are written
for each rowset, the number of blocks can be very high, especially for actively
written tablets. This can cause performance issues compared to the log block
manager even with a small amount of data and it&#8217;s <strong>impossible to switch between
block managers</strong> without wiping and reinitializing the tablet servers.</p>
</div>
</td>
</tr>
</table>
</div>
</div>
<div class="sect2">
<h3 id="disk_issues"><a class="link" href="#disk_issues">Already present: FS layout already exists</a></h3>
<div class="paragraph">
<p>When Kudu starts, it checks each configured data directory, expecting either for all to be
initialized or for all to be empty. If a server fails to start with a log message like</p>
</div>
<div class="listingblock">
<div class="content">
<pre>Check failed: _s.ok() Bad status: Already present: FS layout already exists; not overwriting existing layout: FSManager roots already exist: /data0/kudu/data</pre>
</div>
</div>
<div class="paragraph">
<p>then this precondition has failed. This could be because Kudu was configured with non-empty data
directories on first startup, or because a previously-running, healthy Kudu process was restarted
and at least one data directory was deleted or is somehow corrupted, perhaps because of a disk
error. If in the latter situation, consult the
<a href="administration.html#change_dir_config">Changing Directory Configurations</a> documentation.</p>
</div>
</div>
<div class="sect2">
<h3 id="ntp"><a class="link" href="#ntp">NTP Clock Synchronization</a></h3>
<div class="paragraph">
<p>For the master and tablet server daemons, the server&#8217;s clock must be synchronized using NTP.
In addition, the <strong>maximum clock error</strong> (not to be mistaken with the estimated error)
be below a configurable threshold. The default value is 10 seconds, but it can be set with the flag
<code>--max_clock_sync_error_usec</code>.</p>
</div>
<div class="paragraph">
<p>If NTP is not installed, or if the clock is reported as unsynchronized, Kudu will not
start, and will emit a message such as:</p>
</div>
<div class="listingblock">
<div class="content">
<pre>F0924 20:24:36.336809 14550 hybrid_clock.cc:191 Couldn't get the current time: Clock unsynchronized. Status: Service unavailable: Error reading clock. Clock considered unsynchronized.</pre>
</div>
</div>
<div class="paragraph">
<p>If NTP is installed and synchronized, but the maximum clock error is too high,
the user will see a message such as:</p>
</div>
<div class="listingblock">
<div class="content">
<pre>Sep 17, 8:13:09.873 PM FATAL hybrid_clock.cc:196 Couldn't get the current time: Clock synchronized, but error: 11130000, is past the maximum allowable error: 10000000</pre>
</div>
</div>
<div class="paragraph">
<p>or</p>
</div>
<div class="listingblock">
<div class="content">
<pre>Sep 17, 8:32:31.135 PM FATAL tablet_server_main.cc:38 Check failed: _s.ok() Bad status: Service unavailable: Cannot initialize clock: Cannot initialize HybridClock. Clock synchronized but error was too high (11711000 us).</pre>
</div>
</div>
<div class="sect3">
<h4 id="_installing_ntp"><a class="link" href="#_installing_ntp">Installing NTP</a></h4>
<div class="paragraph">
<p>To install NTP, use the appropriate command for your operating system:</p>
</div>
<table class="tableblock frame-all grid-all spread">
<colgroup>
<col style="width: 50%;">
<col style="width: 50%;">
</colgroup>
<thead>
<tr>
<th class="tableblock halign-left valign-top">OS</th>
<th class="tableblock halign-left valign-top">Command</th>
</tr>
</thead>
<tbody>
<tr>
<td class="tableblock halign-left valign-top"><p class="tableblock">Debian/Ubuntu</p></td>
<td class="tableblock halign-left valign-top"><p class="tableblock"><code>sudo apt-get install ntp</code></p></td>
</tr>
<tr>
<td class="tableblock halign-left valign-top"><p class="tableblock">RHEL/CentOS</p></td>
<td class="tableblock halign-left valign-top"><p class="tableblock"><code>sudo yum install ntp</code></p></td>
</tr>
</tbody>
</table>
<div class="paragraph">
<p>If NTP is installed but not running, start it using one of these commands:</p>
</div>
<table class="tableblock frame-all grid-all spread">
<colgroup>
<col style="width: 50%;">
<col style="width: 50%;">
</colgroup>
<thead>
<tr>
<th class="tableblock halign-left valign-top">OS</th>
<th class="tableblock halign-left valign-top">Command</th>
</tr>
</thead>
<tbody>
<tr>
<td class="tableblock halign-left valign-top"><p class="tableblock">Debian/Ubuntu</p></td>
<td class="tableblock halign-left valign-top"><p class="tableblock"><code>sudo service ntp restart</code></p></td>
</tr>
<tr>
<td class="tableblock halign-left valign-top"><p class="tableblock">RHEL/CentOS</p></td>
<td class="tableblock halign-left valign-top"><p class="tableblock"><code>sudo /etc/init.d/ntpd restart</code></p></td>
</tr>
</tbody>
</table>
</div>
<div class="sect3">
<h4 id="_monitoring_ntp_status"><a class="link" href="#_monitoring_ntp_status">Monitoring NTP Status</a></h4>
<div class="paragraph">
<p>When NTP is installed, you can monitor the synchronization status by running
<code>ntptime</code>. For example, a healthy system may report:</p>
</div>
<div class="listingblock">
<div class="content">
<pre>ntp_gettime() returns code 0 (OK)
time de24c0cf.8d5da274 Tue, Feb 6 2018 16:03:27.552, (.552210980),
maximum error 224455 us, estimated error 383 us, TAI offset 0
ntp_adjtime() returns code 0 (OK)
modes 0x0 (),
offset 1279.543 us, frequency 2.500 ppm, interval 1 s,
maximum error 224455 us, estimated error 383 us,
status 0x2001 (PLL,NANO),
time constant 10, precision 0.001 us, tolerance 500 ppm,</pre>
</div>
</div>
<div class="paragraph">
<p>In particular, note the following most important pieces of output:</p>
</div>
<div class="ulist">
<ul>
<li>
<p><code>maximum error 22455 us</code>: this value is well under the 10-second maximum error required
by Kudu.</p>
</li>
<li>
<p><code>status 0x2001 (PLL,NANO)</code>: this indicates a healthy synchronization status.</p>
</li>
</ul>
</div>
<div class="paragraph">
<p>In contrast, a system without NTP properly configured and running will output
something like the following:</p>
</div>
<div class="listingblock">
<div class="content">
<pre>ntp_gettime() returns code 5 (ERROR)
time de24c240.0c006000 Tue, Feb 6 2018 16:09:36.046, (.046881),
maximum error 16000000 us, estimated error 16000000 us, TAI offset 0
ntp_adjtime() returns code 5 (ERROR)
modes 0x0 (),
offset 0.000 us, frequency 2.500 ppm, interval 1 s,
maximum error 16000000 us, estimated error 16000000 us,
status 0x40 (UNSYNC),
time constant 10, precision 1.000 us, tolerance 500 ppm,</pre>
</div>
</div>
<div class="paragraph">
<p>Note the <code>UNSYNC</code> status and the 16-second maximum error.</p>
</div>
<div class="paragraph">
<p>If more detailed information is needed, the <code>ntpq</code> or <code>ntpdc</code> tools
can be used to dump further information about which network time servers
are currently acting as sources:</p>
</div>
<div class="listingblock">
<div class="content">
<pre>$ ntpq -nc lpeers
remote refid st t when poll reach delay offset jitter
==============================================================================
-108.59.2.24 130.133.1.10 2 u 13 64 1 71.743 0.373 0.016
+192.96.202.120 129.6.15.28 2 u 12 64 1 72.583 -0.426 0.028
-69.10.161.7 204.26.59.157 3 u 11 64 1 15.741 2.641 0.021
-173.255.206.154 45.56.123.24 3 u 10 64 1 43.502 0.199 0.029
-69.195.159.158 128.138.140.44 2 u 9 64 1 53.885 -0.016 0.013
*216.218.254.202 .CDMA. 1 u 6 64 1 1.475 -0.400 0.012
+129.250.35.250 249.224.99.213 2 u 7 64 1 1.342 -0.640 0.018
45.76.244.193 216.239.35.4 2 u 6 64 1 17.380 -0.754 0.051
69.89.207.199 212.215.1.157 2 u 5 64 1 57.796 -3.411 0.059
171.66.97.126 .GPSs. 1 u 4 64 1 1.024 -0.374 0.018
66.228.42.59 211.172.242.174 3 u 3 64 1 72.409 0.895 0.964
91.189.89.198 17.253.34.125 2 u 2 64 1 135.195 -0.329 0.171
162.210.111.4 216.218.254.202 2 u 1 64 1 28.570 0.693 0.306
199.102.46.80 .GPS. 1 u 2 64 1 55.652 -0.039 0.019
91.189.89.199 17.253.34.125 2 u 1 64 1 135.265 -0.413 0.037
$ ntpq -nc opeers
remote local st t when poll reach delay offset disp
==============================================================================
-108.59.2.24 10.17.100.238 2 u 17 64 1 71.743 0.373 187.573
+192.96.202.120 10.17.100.238 2 u 16 64 1 72.583 -0.426 187.594
-69.10.161.7 10.17.100.238 3 u 15 64 1 15.741 2.641 187.569
-173.255.206.154 10.17.100.238 3 u 14 64 1 43.502 0.199 187.580
-69.195.159.158 10.17.100.238 2 u 13 64 1 53.885 -0.016 187.561
*216.218.254.202 10.17.100.238 1 u 10 64 1 1.475 -0.400 187.543
+129.250.35.250 10.17.100.238 2 u 11 64 1 1.342 -0.640 187.588
45.76.244.193 10.17.100.238 2 u 10 64 1 17.380 -0.754 187.596
69.89.207.199 10.17.100.238 2 u 9 64 1 57.796 -3.411 187.541
171.66.97.126 10.17.100.238 1 u 8 64 1 1.024 -0.374 187.578
66.228.42.59 10.17.100.238 3 u 7 64 1 72.409 0.895 187.589
91.189.89.198 10.17.100.238 2 u 6 64 1 135.195 -0.329 187.584
162.210.111.4 10.17.100.238 2 u 5 64 1 28.570 0.693 187.606
199.102.46.80 10.17.100.238 1 u 4 64 1 55.652 -0.039 187.587
91.189.89.199 10.17.100.238 2 u 3 64 1 135.265 -0.413 187.621</pre>
</div>
</div>
<div class="admonitionblock tip">
<table>
<tr>
<td class="icon">
<i class="fa icon-tip" title="Tip"></i>
</td>
<td class="content">
Both <code>opeers</code> and <code>lpeers</code> may be helpful as <code>lpeers</code> lists refid and
jitter, while <code>lpeers</code> lists dispersion.
</td>
</tr>
</table>
</div>
<div class="admonitionblock note">
<table>
<tr>
<td class="icon">
<i class="fa icon-note" title="Note"></i>
</td>
<td class="content">
<div class="paragraph">
<div class="title">Using <code>chrony</code> for time synchronization</div>
<p>Some operating systems offer <code>chrony</code> as an alternative to <code>ntpd</code> for network time
synchronization. Kudu has been tested most thoroughly using <code>ntpd</code> and use of
<code>chrony</code> is considered experimental.</p>
</div>
<div class="paragraph">
<p>In order to use <code>chrony</code> for synchronization, <code>chrony.conf</code> must be configured
with the <code>rtcsync</code> option.</p>
</div>
</td>
</tr>
</table>
</div>
</div>
<div class="sect3">
<h4 id="_ntp_configuration_best_practices"><a class="link" href="#_ntp_configuration_best_practices">NTP Configuration Best Practices</a></h4>
<div class="paragraph">
<p>In order to provide stable time synchronization with low maximum error, follow
these best NTP configuration best practices.</p>
</div>
<div class="paragraph">
<p><strong>Always configure at least four time sources for NTP.</strong> In addition to providing
redundancy in case one or more time sources becomes unavailable, The NTP protocol is
designed to increase its accuracy with a diversity of sources. Even if your organization
provides one or more local time servers, configuring additional remote servers is highly
recommended for a robust setup.</p>
</div>
<div class="paragraph">
<p><strong>Pick servers in your server&#8217;s local geography.</strong> For example, if your servers are located
in Europe, pick servers from the European NTP pool. If your servers are running in a public
cloud environment, consult the cloud provider&#8217;s documentation for a recommended NTP setup.
Many cloud providers offer highly accurate clock synchronization as a service.</p>
</div>
<div class="paragraph">
<p><strong>Use the <code>iburst</code> option for faster synchronization at startup</strong>. The <code>iburst</code> option
instructs <code>ntpd</code> to send an initial "burst" of time queries at startup. This typically
results in a faster time synchronization when a machine restarts.</p>
</div>
<div class="paragraph">
<p>An example NTP server list may appear as follows:</p>
</div>
<div class="listingblock">
<div class="content">
<pre># Use my organization's internal NTP servers.
server ntp1.myorg.internal iburst
server ntp2.myorg.internal iburst
# Provide several public pool servers for
# redundancy and robustness.
server 0.pool.ntp.org iburst
server 1.pool.ntp.org iburst
server 2.pool.ntp.org iburst
server 3.pool.ntp.org iburst</pre>
</div>
</div>
<div class="admonitionblock tip">
<table>
<tr>
<td class="icon">
<i class="fa icon-tip" title="Tip"></i>
</td>
<td class="content">
After configuring NTP, use the <code>ntpq</code> tool described above to verify that <code>ntpd</code> was
able to connect to a variety of peers. If no public peers appear, it is possiblbe that
the NTP protocol is being blocked by a firewall or other network connectivity issue.
</td>
</tr>
</table>
</div>
</div>
<div class="sect3">
<h4 id="_troubleshooting_ntp_stability_problems"><a class="link" href="#_troubleshooting_ntp_stability_problems">Troubleshooting NTP Stability Problems</a></h4>
<div class="paragraph">
<p>As of Kudu 1.6.0, Kudu daemons are able to continue to operate during a brief loss of
NTP synchronization. If NTP synchronization is lost for several hours, however, daemons
may crash. If a daemon crashes due to NTP synchronization issues, consult the <code>ERROR</code> log
for a dump of related information which may help to diagnose the issue.</p>
</div>
<div class="admonitionblock tip">
<table>
<tr>
<td class="icon">
<i class="fa icon-tip" title="Tip"></i>
</td>
<td class="content">
Kudu 1.5.0 and earlier versions were less resilient to brief NTP outages. In
addition, they contained a <a href="https://issues.apache.org/jira/browse/KUDU-2209">bug</a>
which could cause Kudu to incorrectly measure the maximum error, resulting in
crashes. If you experience crashes related to clock synchronization on these
earlier versions of Kudu and it appears that the system&#8217;s NTP configuration is correct,
consider upgrading to Kudu 1.6.0 or later.
</td>
</tr>
</table>
</div>
<div class="admonitionblock tip">
<table>
<tr>
<td class="icon">
<i class="fa icon-tip" title="Tip"></i>
</td>
<td class="content">
NTP requires a network connection and may take a few minutes to synchronize the clock
at startup. In some cases a spotty network connection may make NTP report the clock as unsynchronized.
A common, though temporary, workaround for this is to restart NTP with one of the commands above.
</td>
</tr>
</table>
</div>
</div>
</div>
</div>
</div>
<div class="sect1">
<h2 id="disk_space_usage"><a class="link" href="#disk_space_usage">Disk Space Usage</a></h2>
<div class="sectionbody">
<div class="paragraph">
<p>When using the log block manager (the default on Linux), Kudu uses
<a href="https://en.wikipedia.org/wiki/Sparse_file">sparse files</a> to store data. A
sparse file has a different apparent size than the actual amount of disk space
it uses. This means that some tools may inaccurately report the disk space
used by Kudu. For example, the size listed by <code>ls -l</code> does not accurately
reflect the disk space used by Kudu data files:</p>
</div>
<div class="listingblock">
<div class="content">
<pre class="highlight"><code class="language-bash" data-lang="bash">$ ls -lh /data/kudu/tserver/data
total 117M
-rw------- 1 kudu kudu 160M Mar 26 19:37 0b9807b8b17d48a6a7d5b16bf4ac4e6d.data
-rw------- 1 kudu kudu 4.4K Mar 26 19:37 0b9807b8b17d48a6a7d5b16bf4ac4e6d.metadata
-rw------- 1 kudu kudu 32M Mar 26 19:37 2f26eeacc7e04b65a009e2c9a2a8bd20.data
-rw------- 1 kudu kudu 4.3K Mar 26 19:37 2f26eeacc7e04b65a009e2c9a2a8bd20.metadata
-rw------- 1 kudu kudu 672M Mar 26 19:37 30a2dd2cd3554d8a9613f588a8d136ff.data
-rw------- 1 kudu kudu 4.4K Mar 26 19:37 30a2dd2cd3554d8a9613f588a8d136ff.metadata
-rw------- 1 kudu kudu 32M Mar 26 19:37 7434c83c5ec74ae6af5974e4909cbf82.data
-rw------- 1 kudu kudu 4.3K Mar 26 19:37 7434c83c5ec74ae6af5974e4909cbf82.metadata
-rw------- 1 kudu kudu 672M Mar 26 19:37 772d070347a04f9f8ad2ad3241440090.data
-rw------- 1 kudu kudu 4.4K Mar 26 19:37 772d070347a04f9f8ad2ad3241440090.metadata
-rw------- 1 kudu kudu 160M Mar 26 19:37 86e50a95531f46b6a79e671e6f5f4151.data
-rw------- 1 kudu kudu 4.4K Mar 26 19:37 86e50a95531f46b6a79e671e6f5f4151.metadata
-rw------- 1 kudu kudu 687 Mar 26 19:26 block_manager_instance</code></pre>
</div>
</div>
<div class="paragraph">
<p>Notice that the total size reported is 117MiB, while the first file&#8217;s size is
listed as 160MiB. Adding the <code>-s</code> option to <code>ls</code> will cause <code>ls</code> to output the
file&#8217;s disk space usage.</p>
</div>
<div class="paragraph">
<p>The <code>du</code> and <code>df</code> utilities report the actual disk space usage by default.</p>
</div>
<div class="listingblock">
<div class="content">
<pre class="highlight"><code class="language-bash" data-lang="bash">$ du -h /data/kudu/tserver/data
118M /data/kudu/tserver/data</code></pre>
</div>
</div>
<div class="paragraph">
<p>The apparent size can be shown with the <code>--apparent-size</code> flag to <code>du</code>.</p>
</div>
<div class="listingblock">
<div class="content">
<pre class="highlight"><code class="language-bash" data-lang="bash">$ du -h --apparent-size /data/kudu/tserver/data
1.7G /data/kudu/tserver/data</code></pre>
</div>
</div>
</div>
</div>
<div class="sect1">
<h2 id="crash_reporting"><a class="link" href="#crash_reporting">Reporting Kudu Crashes</a></h2>
<div class="sectionbody">
<div class="paragraph">
<p>Kudu uses the
<a href="https://chromium.googlesource.com/breakpad/breakpad/">Google Breakpad</a>
library to generate a minidump whenever Kudu experiences a crash. These
minidumps are typically only a few MB in size and are generated even if core
dump generation is disabled. At this time, generating minidumps is only
possible in Kudu on Linux builds.</p>
</div>
<div class="paragraph">
<p>A minidump file contains important debugging information about the process that
crashed, including shared libraries loaded and their versions, a list of
threads running at the time of the crash, the state of the processor registers
and a copy of the stack memory for each thread, and CPU and operating system
version information.</p>
</div>
<div class="paragraph">
<p>It is also possible to force Kudu to create a minidump without killing the
process by sending a <code>USR1</code> signal to the <code>kudu-tserver</code> or <code>kudu-master</code>
process. For example:</p>
</div>
<div class="listingblock">
<div class="content">
<pre class="highlight"><code class="language-bash" data-lang="bash">sudo pkill -USR1 kudu-tserver</code></pre>
</div>
</div>
<div class="paragraph">
<p>By default, Kudu stores its minidumps in a subdirectory of its configured glog
directory called <code>minidumps</code>. This location can be customized by setting the
<code>--minidump_path</code> flag. Kudu will retain only a certain number of minidumps
before deleting the oldest ones, in an effort to avoid filling up the disk with
minidump files. The maximum number of minidumps that will be retained can be
controlled by setting the <code>--max_minidumps</code> gflag.</p>
</div>
<div class="paragraph">
<p>Minidumps contain information specific to the binary that created them and so
are not usable without access to the exact binary that crashed, or a very
similar binary. For more information on processing and using minidump files,
see scripts/dump_breakpad_symbols.py.</p>
</div>
<div class="admonitionblock note">
<table>
<tr>
<td class="icon">
<i class="fa icon-note" title="Note"></i>
</td>
<td class="content">
A minidump can be emailed to a Kudu developer or attached to a JIRA in
order to help a Kudu developer debug a crash. In order for it to be useful, the
developer will need to know the exact version of Kudu and the operating system
where the crash was observed. Note that while a minidump does not contain a
heap memory dump, it does contain stack memory and therefore it is possible for
application data to appear in a minidump. If confidential or personal
information is stored on the cluster, do not share minidump files.
</td>
</tr>
</table>
</div>
</div>
</div>
<div class="sect1">
<h2 id="_performance_troubleshooting"><a class="link" href="#_performance_troubleshooting">Performance Troubleshooting</a></h2>
<div class="sectionbody">
<div class="sect2">
<h3 id="kudu_tracing"><a class="link" href="#kudu_tracing">Kudu Tracing</a></h3>
<div class="paragraph">
<p>The <code>kudu-master</code> and <code>kudu-tserver</code> daemons include built-in tracing support
based on the open source
<a href="https://www.chromium.org/developers/how-tos/trace-event-profiling-tool">Chromium Tracing</a>
framework. You can use tracing to help diagnose latency issues or other problems
on Kudu servers.</p>
</div>
<div class="sect3">
<h4 id="_accessing_the_tracing_interface"><a class="link" href="#_accessing_the_tracing_interface">Accessing the tracing interface</a></h4>
<div class="paragraph">
<p>The tracing interface is accessed via a web browser as part of the
embedded web server in each of the Kudu daemons.</p>
</div>
<table class="tableblock frame-all grid-all spread">
<caption class="title">Table 1. Tracing Interface URLs</caption>
<colgroup>
<col style="width: 50%;">
<col style="width: 50%;">
</colgroup>
<thead>
<tr>
<th class="tableblock halign-left valign-top">Daemon</th>
<th class="tableblock halign-left valign-top">URL</th>
</tr>
</thead>
<tbody>
<tr>
<td class="tableblock halign-left valign-top"><p class="tableblock">Tablet Server</p></td>
<td class="tableblock halign-left valign-top"><p class="tableblock"><a href="http://tablet-server-1.example.com:8050/tracing.html" class="bare">http://tablet-server-1.example.com:8050/tracing.html</a></p></td>
</tr>
<tr>
<td class="tableblock halign-left valign-top"><p class="tableblock">Master</p></td>
<td class="tableblock halign-left valign-top"><p class="tableblock"><a href="http://master-1.example.com:8051/tracing.html" class="bare">http://master-1.example.com:8051/tracing.html</a></p></td>
</tr>
</tbody>
</table>
<div class="admonitionblock warning">
<table>
<tr>
<td class="icon">
<i class="fa icon-warning" title="Warning"></i>
</td>
<td class="content">
The tracing interface is known to work in recent versions of Google Chrome.
Other browsers may not work as expected.
</td>
</tr>
</table>
</div>
</div>
<div class="sect3">
<h4 id="_collecting_a_trace"><a class="link" href="#_collecting_a_trace">Collecting a trace</a></h4>
<div class="paragraph">
<p>After navigating to the tracing interface, click the <strong>Record</strong> button on the top left corner
of the screen. When beginning to diagnose a problem, start by selecting all categories.
Click <strong>Record</strong> to begin recording a trace.</p>
</div>
<div class="paragraph">
<p>During the trace collection, events are collected into an in-memory ring buffer.
This ring buffer is fixed in size, so it will eventually fill up to 100%. However, new events
are still being collected while older events are being removed. While recording the trace,
trigger the behavior or workload you are interested in exploring.</p>
</div>
<div class="paragraph">
<p>After collecting for several seconds, click <strong>Stop</strong>. The collected trace will be
downloaded and displayed. Use the <strong>?</strong> key to display help text about using the tracing
interface to explore the trace.</p>
</div>
</div>
<div class="sect3">
<h4 id="_saving_a_trace"><a class="link" href="#_saving_a_trace">Saving a trace</a></h4>
<div class="paragraph">
<p>You can save collected traces as JSON files for later analysis by clicking <strong>Save</strong>
after collecting the trace. To load and analyze a saved JSON file, click <strong>Load</strong>
and choose the file.</p>
</div>
</div>
</div>
<div class="sect2">
<h3 id="_rpc_timeout_traces"><a class="link" href="#_rpc_timeout_traces">RPC Timeout Traces</a></h3>
<div class="paragraph">
<p>If client applications are experiencing RPC timeouts, the Kudu tablet server
<code>WARNING</code> level logs should contain a log entry which includes an RPC-level trace. For example:</p>
</div>
<div class="listingblock">
<div class="content">
<pre>W0922 00:56:52.313848 10858 inbound_call.cc:193] Call kudu.consensus.ConsensusService.UpdateConsensus
from 192.168.1.102:43499 (request call id 3555909) took 1464ms (client timeout 1000).
W0922 00:56:52.314888 10858 inbound_call.cc:197] Trace:
0922 00:56:50.849505 (+ 0us) service_pool.cc:97] Inserting onto call queue
0922 00:56:50.849527 (+ 22us) service_pool.cc:158] Handling call
0922 00:56:50.849574 (+ 47us) raft_consensus.cc:1008] Updating replica for 2 ops
0922 00:56:50.849628 (+ 54us) raft_consensus.cc:1050] Early marking committed up to term: 8 index: 880241
0922 00:56:50.849968 (+ 340us) raft_consensus.cc:1056] Triggering prepare for 2 ops
0922 00:56:50.850119 (+ 151us) log.cc:420] Serialized 1555 byte log entry
0922 00:56:50.850213 (+ 94us) raft_consensus.cc:1131] Marking committed up to term: 8 index: 880241
0922 00:56:50.850218 (+ 5us) raft_consensus.cc:1148] Updating last received op as term: 8 index: 880243
0922 00:56:50.850219 (+ 1us) raft_consensus.cc:1195] Filling consensus response to leader.
0922 00:56:50.850221 (+ 2us) raft_consensus.cc:1169] Waiting on the replicates to finish logging
0922 00:56:52.313763 (+1463542us) raft_consensus.cc:1182] finished
0922 00:56:52.313764 (+ 1us) raft_consensus.cc:1190] UpdateReplicas() finished
0922 00:56:52.313788 (+ 24us) inbound_call.cc:114] Queueing success response</pre>
</div>
</div>
<div class="paragraph">
<p>These traces can give an indication of which part of the request was slow. Please
include them in bug reports related to RPC latency outliers.</p>
</div>
</div>
<div class="sect2">
<h3 id="_kernel_stack_watchdog_traces"><a class="link" href="#_kernel_stack_watchdog_traces">Kernel Stack Watchdog Traces</a></h3>
<div class="paragraph">
<p>Each Kudu server process has a background thread called the Stack Watchdog, which
monitors the other threads in the server in case they have blocked for
longer-than-expected periods of time. These traces can indicate operating system issues
or bottlenecked storage.</p>
</div>
<div class="paragraph">
<p>When the watchdog thread identifies a case of thread blockage, it logs an entry
in the <code>WARNING</code> log like the following:</p>
</div>
<div class="listingblock">
<div class="content">
<pre>W0921 23:51:54.306350 10912 kernel_stack_watchdog.cc:111] Thread 10937 stuck at /data/kudu/consensus/log.cc:505 for 537ms:
Kernel stack:
[&lt;ffffffffa00b209d&gt;] do_get_write_access+0x29d/0x520 [jbd2]
[&lt;ffffffffa00b2471&gt;] jbd2_journal_get_write_access+0x31/0x50 [jbd2]
[&lt;ffffffffa00fe6d8&gt;] __ext4_journal_get_write_access+0x38/0x80 [ext4]
[&lt;ffffffffa00d9b23&gt;] ext4_reserve_inode_write+0x73/0xa0 [ext4]
[&lt;ffffffffa00d9b9c&gt;] ext4_mark_inode_dirty+0x4c/0x1d0 [ext4]
[&lt;ffffffffa00d9e90&gt;] ext4_dirty_inode+0x40/0x60 [ext4]
[&lt;ffffffff811ac48b&gt;] __mark_inode_dirty+0x3b/0x160
[&lt;ffffffff8119c742&gt;] file_update_time+0xf2/0x170
[&lt;ffffffff8111c1e0&gt;] __generic_file_aio_write+0x230/0x490
[&lt;ffffffff8111c4c8&gt;] generic_file_aio_write+0x88/0x100
[&lt;ffffffffa00d3fb1&gt;] ext4_file_write+0x61/0x1e0 [ext4]
[&lt;ffffffff81180f5b&gt;] do_sync_readv_writev+0xfb/0x140
[&lt;ffffffff81181ee6&gt;] do_readv_writev+0xd6/0x1f0
[&lt;ffffffff81182046&gt;] vfs_writev+0x46/0x60
[&lt;ffffffff81182102&gt;] sys_pwritev+0xa2/0xc0
[&lt;ffffffff8100b072&gt;] system_call_fastpath+0x16/0x1b
[&lt;ffffffffffffffff&gt;] 0xffffffffffffffff
User stack:
@ 0x3a1ace10c4 (unknown)
@ 0x1262103 (unknown)
@ 0x12622d4 (unknown)
@ 0x12603df (unknown)
@ 0x8e7bfb (unknown)
@ 0x8f478b (unknown)
@ 0x8f55db (unknown)
@ 0x12a7b6f (unknown)
@ 0x3a1b007851 (unknown)
@ 0x3a1ace894d (unknown)
@ (nil) (unknown)</pre>
</div>
</div>
<div class="paragraph">
<p>These traces can be useful for diagnosing root-cause latency issues when they are caused by systems
below Kudu, such as disk controllers or filesystems.</p>
</div>
</div>
<div class="sect2">
<h3 id="memory_limits"><a class="link" href="#memory_limits">Memory Limits</a></h3>
<div class="paragraph">
<p>Kudu has a hard and soft memory limit. The hard memory limit is the maximum amount a Kudu process
is allowed to use, and is controlled by the <code>--memory_limit_hard_bytes</code> flag. The soft memory limit
is a percentage of the hard memory limit, controlled by the flag <code>memory_limit_soft_percentage</code> and
with a default value of 80%, that determines the amount of memory a process may use before it will
start rejecting some write operations.</p>
</div>
<div class="paragraph">
<p>If the logs or RPC traces contain messages like</p>
</div>
<div class="listingblock">
<div class="content">
<pre>Service unavailable: Soft memory limit exceeded (at 96.35% of capacity)</pre>
</div>
</div>
<div class="paragraph">
<p>then Kudu is rejecting writes due to memory backpressure. This may result in write timeouts. There
are several ways to relieve the memory pressure on Kudu:</p>
</div>
<div class="ulist">
<ul>
<li>
<p>If the host has more memory available for Kudu, increase <code>--memory_limit_hard_bytes</code>.</p>
</li>
<li>
<p>Increase the rate at which Kudu can flush writes from memory to disk by increasing the number of
disks or increasing the number of maintenance manager threads <code>--maintenance_manager_num_threads</code>.
Generally, the recommended ratio of maintenance manager threads to data directories is 1:3.</p>
</li>
<li>
<p>Reduce the volume of writes flowing to Kudu on the application side.</p>
</li>
</ul>
</div>
<div class="paragraph">
<p>Finally, on versions of Kudu prior to 1.8, check the value of
<code>--block_cache_capacity_mb</code>. This setting determines the maximum size of Kudu&#8217;s
block cache. While a higher value can help with read and write performance,
do not raise <code>--block_cache_capacity_mb</code> above the memory pressure threshold,
which is <code>--memory_pressure_percentage</code> (default 60%) of
<code>--memory_limit_hard_bytes</code>, as this will cause Kudu to flush aggressively even
if write throughput is low. Keeping <code>--block_cache_capacity_mb</code> below 50% of the
memory pressure threshold is recommended. With the defaults, this means
<code>--block_cache_capacity_mb</code> should not exceed 30% of
<code>--memory_limit_hard_bytes</code>. On Kudu 1.8 and higher, servers will refuse to
start if the block cache capacity exceeds the memory pressure threshold.</p>
</div>
</div>
<div class="sect2">
<h3 id="block_cache_size"><a class="link" href="#block_cache_size">Block Cache Size</a></h3>
<div class="paragraph">
<p>Kudu uses an LRU cache for recently read data. On workloads that scan a subset
of the data repeatedly, raising the size of this cache can offer significant
performance benefits. To increase the amount of memory dedicated to the block
cache, increase the value of the flag <code>--block_cache_capacity_mb</code>. The default
is 512MiB.</p>
</div>
<div class="paragraph">
<p>Kudu provides a set of useful metrics for evaluating the performance of the
block cache, which can be found on the <code>/metrics</code> endpoint of the web UI. An
example set:</p>
</div>
<div class="listingblock">
<div class="content">
<pre class="highlight"><code class="language-json" data-lang="json">{
"name": "block_cache_inserts",
"value": 64
},
{
"name": "block_cache_lookups",
"value": 512
},
{
"name": "block_cache_evictions",
"value": 0
},
{
"name": "block_cache_misses",
"value": 96
},
{
"name": "block_cache_misses_caching",
"value": 64
},
{
"name": "block_cache_hits",
"value": 0
},
{
"name": "block_cache_hits_caching",
"value": 352
},
{
"name": "block_cache_usage",
"value": 6976
}</code></pre>
</div>
</div>
<div class="paragraph">
<p>To judge the efficiency of the block cache on a tablet server, first wait until
the server has been running and serving normal requests for some time, so the
cache is not cold. Unless the server stores very little data or is idle,
<code>block_cache_usage</code> should be equal or nearly equal to <code>block_cache_capacity_mb</code>.
Once the cache has reached steady state, compare <code>block_cache_lookups</code> to
<code>block_cache_misses_caching</code>. The latter metric counts the number of blocks that
Kudu expected to read from cache but which weren&#8217;t found in the cache. If a
significant amount of lookups result in misses on expected cache hits, and the
<code>block_cache_evictions</code> metric is significant compared to <code>block_cache_inserts</code>,
then raising the size of the block cache may provide a performance boost.
However, the utility of the block cache is highly dependent on workload, so it&#8217;s
necessary to test the benefits of a larger block cache.</p>
</div>
<div class="admonitionblock warning">
<table>
<tr>
<td class="icon">
<i class="fa icon-warning" title="Warning"></i>
</td>
<td class="content">
Do not raise the block cache size <code>--block_cache_capacity_mb</code> higher
than the memory pressure threshold (defaults to 60% of <code>--memory_limit_hard_bytes</code>).
As this would cause poor flushing behavior, Kudu servers version 1.8 and higher
will refuse to start when misconfigured in this way.
</td>
</tr>
</table>
</div>
</div>
<div class="sect2">
<h3 id="heap_sampling"><a class="link" href="#heap_sampling">Heap Sampling</a></h3>
<div class="paragraph">
<p>For advanced debugging of memory usage, released builds of Kudu enable Heap Sampling by default.
This allows Kudu developers to associate memory usage with the specific lines of code and data
structures responsible. When reporting a bug related to memory usage or an apparent memory leak,
heap profiling can give quantitative data to pinpoint the issue.</p>
</div>
<div class="paragraph">
<p>If heap sampling is enabled, the current sampled heap occupancy can be retrieved over HTTP
by visiting <code><a href="http://tablet-server.example.com:8050/pprof/heap" class="bare">http://tablet-server.example.com:8050/pprof/heap</a></code> or
<code><a href="http://master.example.com:8051/pprof/heap" class="bare">http://master.example.com:8051/pprof/heap</a></code>. The output is a machine-readable dump of the
stack traces with their associated heap usage.</p>
</div>
<div class="paragraph">
<p>Rather than visiting the heap profile page directly in a web browser, it is typically
more useful to use the <code>pprof</code> tool that is distributed as part of the <code>gperftools</code>
open source project. For example, a developer with a local build tree can use the
following command to collect the sampled heap usage and output an SVG diagram:</p>
</div>
<div class="listingblock">
<div class="content">
<pre>thirdparty/installed/uninstrumented/bin/pprof -svg 'http://localhost:8051/pprof/heap' &gt; /tmp/heap.svg</pre>
</div>
</div>
<div class="paragraph">
<p>The resulting SVG may be visualized in a web browser or sent to the Kudu community to help
troubleshoot memory occupancy issues.</p>
</div>
<div class="admonitionblock tip">
<table>
<tr>
<td class="icon">
<i class="fa icon-tip" title="Tip"></i>
</td>
<td class="content">
Heap samples contain only summary information about allocations and do not contain any
<em>data</em> from the heap. It is safe to share heap samples in public without fear of exposing
confidential or sensitive data.
</td>
</tr>
</table>
</div>
</div>
<div class="sect2">
<h3 id="slow_dns_nscd"><a class="link" href="#slow_dns_nscd">Slow DNS Lookups and <code>nscd</code></a></h3>
<div class="paragraph">
<p>For better scalability on nodes hosting many replicas, we recommend that you use
<code>nscd</code> (name service cache daemon) to cache both DNS name resolution and static name resolution (via <code>/etc/hosts</code>).</p>
</div>
<div class="paragraph">
<p>When DNS lookups are slow, you will see a log message similar to the following:</p>
</div>
<div class="listingblock">
<div class="content">
<pre>W0926 11:19:01.339553 27231 net_util.cc:129] Time spent resolving address for kudu-tserver.example.com: real 4.647s user 0.000s sys 0.000s</pre>
</div>
</div>
<div class="paragraph">
<p><code>nscd</code> (name service cache daemon) can alleviate slow name resolution by providing
a cache for the most common name service requests, such as for passwords, groups,
and hosts.</p>
</div>
<div class="paragraph">
<p>Refer to your operating system documentation for how to install and enable <code>nscd</code>.</p>
</div>
</div>
</div>
</div>
<div class="sect1">
<h2 id="_issues_using_kudu"><a class="link" href="#_issues_using_kudu">Issues using Kudu</a></h2>
<div class="sectionbody">
<div class="sect2">
<h3 id="hive_handler"><a class="link" href="#hive_handler">ClassNotFoundException: com.cloudera.kudu.hive.KuduStorageHandler</a></h3>
<div class="paragraph">
<p>Users will encounter this exception when trying to use a Kudu table via Hive. This
is not a case of a missing jar, but simply that Impala stores Kudu metadata in
Hive in a format that&#8217;s unreadable to other tools, including Hive itself and Spark.
There is no workaround for Hive users. Spark users need to create temporary tables.</p>
</div>
</div>
<div class="sect2">
<h3 id="too_many_threads"><a class="link" href="#too_many_threads">Runtime error: Could not create thread: Resource temporarily unavailable (error 11)</a></h3>
<div class="paragraph">
<p>Users will encounter this error when Kudu is unable to create more threads,
usually on versions of Kudu older than 1.7. It happens on tablet servers, and
is a sign that the tablet server hosts too many tablet replicas. To fix the
issue, users can raise the <code>nproc</code> ulimit as detailed in the documentation for
their operating system or distribution. However, the better solution is to
reduce the number of replicas on the tablet server. This may involve rethinking
the table&#8217;s partitioning schema. For the recommended limits on number of
replicas per tablet server, see the known issues and scaling limitations
documentation for the appropriate Kudu release. The
<a href="http://kudu.apache.org/releases/">releases page</a> has links to documentation
for previous versions of Kudu; for the latest release, see the
<a href="known_issues.html">known issues page</a>.</p>
</div>
</div>
<div class="sect2">
<h3 id="tombstoned_or_stopped_tablets"><a class="link" href="#tombstoned_or_stopped_tablets">Tombstoned or STOPPED tablet replicas</a></h3>
<div class="paragraph">
<p>Users may notice some replicas on a tablet server are in a STOPPED state, and
remain on the server indefinitely. These replicas are tombstones. A tombstone
indicates that the tablet server once held a bona fide replica of its tablet.
For example, if a tablet server goes down and its replicas are re-replicated
elsewhere, if the tablet server rejoins the cluster its replicas will become
tombstones. A tombstone will remain until the table it belongs to is deleted, or
a new replica of the same tablet is placed on the tablet server. A count of
tombstoned replicas and details of each one are available on the /tablets page
of the tablet server web UI.</p>
</div>
<div class="paragraph">
<p>The Raft consensus algorithm that Kudu uses for replication requires tombstones
for correctness in certain rare situations. They consume minimal resources and
hold no data. They must not be deleted.</p>
</div>
</div>
<div class="sect2">
<h3 id="cfile_corruption"><a class="link" href="#cfile_corruption">Corruption: checksum error on CFile block</a></h3>
<div class="paragraph">
<p>In versions prior to Kudu 1.8.0, if the data on disk becomes corrupt, users
will encounter warnings containing "Corruption: checksum error on CFile block"
in the tablet server logs and client side errors when trying to scan tablets
with corrupt CFile blocks. Fixing this corruption is a manual process.</p>
</div>
<div class="paragraph">
<p>To fix the issue, users can first identify all the affected tablets by
running a checksum scan on the affected tables or tablets using the
<code><a href="command_line_tools_reference.html#cluster-ksck">ksck</a></code> tool.</p>
</div>
<div class="listingblock">
<div class="content">
<pre>sudo -u kudu kudu cluster ksck &lt;master_addresses&gt; -checksum_scan -tables=&lt;tables&gt;
sudo -u kudu kudu cluster ksck &lt;master_addresses&gt; -checksum_scan -tablets=&lt;tablets&gt;</pre>
</div>
</div>
<div class="paragraph">
<p>If there is at least one replica for each tablet that does not return a corruption
error, you can repair the bad copies by deleting them and forcing them to be
re-replicated from the leader using the
<code><a href="command_line_tools_reference.html#remote_replica-delete">remote_replica delete</a> tool</code>.</p>
</div>
<div class="listingblock">
<div class="content">
<pre>sudo -u kudu kudu remote_replica delete &lt;tserver_address&gt; &lt;tablet_id&gt; "Cfile Corruption"</pre>
</div>
</div>
<div class="paragraph">
<p>If all of the replica are corrupt, then some data loss has occurred.
Until <a href="https://issues.apache.org/jira/browse/KUDU-2526">KUDU-2526</a> is
completed this can happen if the corrupt replica became the leader and the
existing follower replicas are replaced.</p>
</div>
<div class="paragraph">
<p>If data has been lost, you can repair the table by replacing the corrupt tablet
with an empty one using the
<code><a href="command_line_tools_reference.html#tablet-unsafe_replace_tablet">unsafe_replace_tablet</a></code> tool.</p>
</div>
<div class="listingblock">
<div class="content">
<pre>sudo -u kudu kudu tablet unsafe_replace_tablet &lt;master_addresses&gt; &lt;tablet_id&gt;</pre>
</div>
</div>
<div class="paragraph">
<p>From versions 1.8.0 onwards, Kudu will mark the affected replicas as failed,
leading to their automatic re-replication elsewhere.</p>
</div>
</div>
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<a href="administration.html">Administering Kudu</a>
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<span class="active-toc">Troubleshooting Kudu</span>
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<li><a href="#_startup_errors">Startup Errors</a>
<ul class="sectlevel2">
<li><a href="#req_hole_punching">Errors During Hole Punching Test</a></li>
<li><a href="#disk_issues">Already present: FS layout already exists</a></li>
<li><a href="#ntp">NTP Clock Synchronization</a></li>
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</li>
<li><a href="#disk_space_usage">Disk Space Usage</a></li>
<li><a href="#crash_reporting">Reporting Kudu Crashes</a></li>
<li><a href="#_performance_troubleshooting">Performance Troubleshooting</a>
<ul class="sectlevel2">
<li><a href="#kudu_tracing">Kudu Tracing</a></li>
<li><a href="#_rpc_timeout_traces">RPC Timeout Traces</a></li>
<li><a href="#_kernel_stack_watchdog_traces">Kernel Stack Watchdog Traces</a></li>
<li><a href="#memory_limits">Memory Limits</a></li>
<li><a href="#block_cache_size">Block Cache Size</a></li>
<li><a href="#heap_sampling">Heap Sampling</a></li>
<li><a href="#slow_dns_nscd">Slow DNS Lookups and <code>nscd</code></a></li>
</ul>
</li>
<li><a href="#_issues_using_kudu">Issues using Kudu</a>
<ul class="sectlevel2">
<li><a href="#hive_handler">ClassNotFoundException: com.cloudera.kudu.hive.KuduStorageHandler</a></li>
<li><a href="#too_many_threads">Runtime error: Could not create thread: Resource temporarily unavailable (error 11)</a></li>
<li><a href="#tombstoned_or_stopped_tablets">Tombstoned or STOPPED tablet replicas</a></li>
<li><a href="#cfile_corruption">Corruption: checksum error on CFile block</a></li>
</ul>
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