taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.ProteinINSDSeqXMLWorker.json

{
  "classLoaderSharing" : "workflow",
  "script" : "if ((id == void) || (id == null) || id.equals(\"\")) {\n\tthrow new RunTimeException(\"port id must have a non-empty value\");\n}\n\nURL url = new URL (\"http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?rettype=gbc&db=protein&retmode=xml&id=\" + id);\n\nBufferedReader reader = new BufferedReader (new InputStreamReader(url.openStream()));\nStringWriter writer = new StringWriter();\n\nchar[] buffer = new char[1024];\n    while (true) {\n        int r = reader.read(buffer);\n        if (r <= 0) {\n            break;\n        }\n        writer.write(buffer, 0, r);\n    }\nreader.close();\noutputText = writer.toString();\n",
  "localworkerName" : "net.sourceforge.taverna.scuflworkers.ncbi.ProteinINSDSeqXMLWorker",
  "inputPorts" : [ {
    "name" : "id",
    "depth" : 0,
    "type" : "String"
  } ],
  "outputPorts" : [ {
    "name" : "outputText",
    "depth" : 0,
    "granularDepth" : 0
  } ],
  "isAltered" : false
}