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| <div class="subTitle">org.apache.taverna.commandline</div> |
| <h2 title="Class CommandLineTool" class="title">Class CommandLineTool</h2> |
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| <li>org.apache.taverna.commandline.CommandLineTool</li> |
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| <pre>public class <span class="typeNameLabel">CommandLineTool</span> |
| extends <a href="http://docs.oracle.com/javase/7/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</a></pre> |
| <div class="block">A utility class that wraps the process of executing a workflow, allowing workflows to be easily |
| executed independently of the GUI.</div> |
| <dl> |
| <dt><span class="simpleTagLabel">Author:</span></dt> |
| <dd>Stuart Owen, Alex Nenadic</dd> |
| </dl> |
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| <th class="colOne" scope="col">Constructor and Description</th> |
| </tr> |
| <tr class="altColor"> |
| <td class="colOne"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineTool.html#CommandLineTool--">CommandLineTool</a></span>()</code> </td> |
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| <td class="colFirst"><code>protected void</code></td> |
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| </tr> |
| <tr id="i1" class="rowColor"> |
| <td class="colFirst"><code>protected void</code></td> |
| <td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineTool.html#error-java.lang.String-java.lang.Throwable-">error</a></span>(<a href="http://docs.oracle.com/javase/7/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</a> message, |
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| <tr id="i2" class="altColor"> |
| <td class="colFirst"><code>protected void</code></td> |
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| </tr> |
| <tr id="i3" class="rowColor"> |
| <td class="colFirst"><code>void</code></td> |
| <td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineTool.html#run--">run</a></span>()</code> </td> |
| </tr> |
| <tr id="i4" class="altColor"> |
| <td class="colFirst"><code>void</code></td> |
| <td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineTool.html#setCommandLineOptions-org.apache.taverna.commandline.options.CommandLineOptions-">setCommandLineOptions</a></span>(<a href="../../../../org/apache/taverna/commandline/options/CommandLineOptions.html" title="interface in org.apache.taverna.commandline.options">CommandLineOptions</a> commandLineOptions)</code> </td> |
| </tr> |
| <tr id="i5" class="rowColor"> |
| <td class="colFirst"><code>void</code></td> |
| <td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineTool.html#setCredentialManager-org.apache.taverna.security.credentialmanager.CredentialManager-">setCredentialManager</a></span>(<a href="https://taverna.incubator.apache.org/javadoc/taverna-engine/org/apache/taverna/security/credentialmanager/CredentialManager.html?is-external=true" title="class or interface in org.apache.taverna.security.credentialmanager">CredentialManager</a> credentialManager)</code> </td> |
| </tr> |
| <tr id="i6" class="altColor"> |
| <td class="colFirst"><code>void</code></td> |
| <td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineTool.html#setDatabaseConfiguration-org.apache.taverna.configuration.database.DatabaseConfiguration-">setDatabaseConfiguration</a></span>(<a href="https://taverna.incubator.apache.org/javadoc/taverna-engine/org/apache/taverna/configuration/database/DatabaseConfiguration.html?is-external=true" title="class or interface in org.apache.taverna.configuration.database">DatabaseConfiguration</a> databaseConfiguration)</code> |
| <div class="block">Sets the databaseConfiguration.</div> |
| </td> |
| </tr> |
| <tr id="i7" class="rowColor"> |
| <td class="colFirst"><code>void</code></td> |
| <td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineTool.html#setDatabaseManager-org.apache.taverna.configuration.database.DatabaseManager-">setDatabaseManager</a></span>(<a href="https://taverna.incubator.apache.org/javadoc/taverna-engine/org/apache/taverna/configuration/database/DatabaseManager.html?is-external=true" title="class or interface in org.apache.taverna.configuration.database">DatabaseManager</a> databaseManager)</code> |
| <div class="block">Sets the databaseManager.</div> |
| </td> |
| </tr> |
| <tr id="i8" class="altColor"> |
| <td class="colFirst"><code>void</code></td> |
| <td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineTool.html#setRunService-org.apache.taverna.platform.run.api.RunService-">setRunService</a></span>(<a href="https://taverna.incubator.apache.org/javadoc/taverna-engine/org/apache/taverna/platform/run/api/RunService.html?is-external=true" title="class or interface in org.apache.taverna.platform.run.api">RunService</a> runService)</code> </td> |
| </tr> |
| <tr id="i9" class="rowColor"> |
| <td class="colFirst"><code>int</code></td> |
| <td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineTool.html#setupAndExecute--">setupAndExecute</a></span>()</code> </td> |
| </tr> |
| <tr id="i10" class="altColor"> |
| <td class="colFirst"><code>void</code></td> |
| <td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineTool.html#setWorkflowBundleIO-org.apache.taverna.scufl2.api.io.WorkflowBundleIO-">setWorkflowBundleIO</a></span>(<a href="https://taverna.incubator.apache.org/javadoc/taverna-language/org/apache/taverna/scufl2/api/io/WorkflowBundleIO.html?is-external=true" title="class or interface in org.apache.taverna.scufl2.api.io">WorkflowBundleIO</a> workflowBundleIO)</code> </td> |
| </tr> |
| <tr id="i11" class="rowColor"> |
| <td class="colFirst"><code>protected void</code></td> |
| <td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineTool.html#validateWorkflowBundle-org.apache.taverna.scufl2.api.container.WorkflowBundle-">validateWorkflowBundle</a></span>(<a href="https://taverna.incubator.apache.org/javadoc/taverna-language/org/apache/taverna/scufl2/api/container/WorkflowBundle.html?is-external=true" title="class or interface in org.apache.taverna.scufl2.api.container">WorkflowBundle</a> workflowBundle)</code> </td> |
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| <h3>Methods inherited from class java.lang.<a href="http://docs.oracle.com/javase/7/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</a></h3> |
| <code><a href="http://docs.oracle.com/javase/7/docs/api/java/lang/Object.html?is-external=true#clone--" title="class or interface in java.lang">clone</a>, <a href="http://docs.oracle.com/javase/7/docs/api/java/lang/Object.html?is-external=true#equals-java.lang.Object-" title="class or interface in java.lang">equals</a>, <a href="http://docs.oracle.com/javase/7/docs/api/java/lang/Object.html?is-external=true#finalize--" title="class or interface in java.lang">finalize</a>, <a href="http://docs.oracle.com/javase/7/docs/api/java/lang/Object.html?is-external=true#getClass--" title="class or interface in java.lang">getClass</a>, <a href="http://docs.oracle.com/javase/7/docs/api/java/lang/Object.html?is-external=true#hashCode--" title="class or interface in java.lang">hashCode</a>, <a href="http://docs.oracle.com/javase/7/docs/api/java/lang/Object.html?is-external=true#notify--" title="class or interface in java.lang">notify</a>, <a href="http://docs.oracle.com/javase/7/docs/api/java/lang/Object.html?is-external=true#notifyAll--" title="class or interface in java.lang">notifyAll</a>, <a href="http://docs.oracle.com/javase/7/docs/api/java/lang/Object.html?is-external=true#toString--" title="class or interface in java.lang">toString</a>, <a href="http://docs.oracle.com/javase/7/docs/api/java/lang/Object.html?is-external=true#wait--" title="class or interface in java.lang">wait</a>, <a href="http://docs.oracle.com/javase/7/docs/api/java/lang/Object.html?is-external=true#wait-long-" title="class or interface in java.lang">wait</a>, <a href="http://docs.oracle.com/javase/7/docs/api/java/lang/Object.html?is-external=true#wait-long-int-" title="class or interface in java.lang">wait</a></code></li> |
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| </ul> |
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| <h3>Constructor Detail</h3> |
| <a name="CommandLineTool--"> |
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| <h4>CommandLineTool</h4> |
| <pre>public CommandLineTool()</pre> |
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| <h4>run</h4> |
| <pre>public void run()</pre> |
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| <a name="setupAndExecute--"> |
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| <h4>setupAndExecute</h4> |
| <pre>public int setupAndExecute() |
| throws <a href="../../../../org/apache/taverna/commandline/exceptions/InputMismatchException.html" title="class in org.apache.taverna.commandline.exceptions">InputMismatchException</a>, |
| <a href="../../../../org/apache/taverna/commandline/exceptions/InvalidOptionException.html" title="class in org.apache.taverna.commandline.exceptions">InvalidOptionException</a>, |
| <a href="https://taverna.incubator.apache.org/javadoc/taverna-engine/org/apache/taverna/security/credentialmanager/CMException.html?is-external=true" title="class or interface in org.apache.taverna.security.credentialmanager">CMException</a>, |
| <a href="../../../../org/apache/taverna/commandline/exceptions/OpenDataflowException.html" title="class in org.apache.taverna.commandline.exceptions">OpenDataflowException</a>, |
| <a href="https://taverna.incubator.apache.org/javadoc/taverna-language/org/apache/taverna/scufl2/api/io/ReaderException.html?is-external=true" title="class or interface in org.apache.taverna.scufl2.api.io">ReaderException</a>, |
| <a href="http://docs.oracle.com/javase/7/docs/api/java/io/IOException.html?is-external=true" title="class or interface in java.io">IOException</a>, |
| <a href="https://taverna.incubator.apache.org/javadoc/taverna-language/org/apache/taverna/scufl2/validation/ValidationException.html?is-external=true" title="class or interface in org.apache.taverna.scufl2.validation">ValidationException</a>, |
| <a href="../../../../org/apache/taverna/commandline/exceptions/ReadInputException.html" title="class in org.apache.taverna.commandline.exceptions">ReadInputException</a>, |
| <a href="https://taverna.incubator.apache.org/javadoc/taverna-engine/org/apache/taverna/platform/execution/api/InvalidWorkflowException.html?is-external=true" title="class or interface in org.apache.taverna.platform.execution.api">InvalidWorkflowException</a>, |
| <a href="https://taverna.incubator.apache.org/javadoc/taverna-engine/org/apache/taverna/platform/run/api/RunProfileException.html?is-external=true" title="class or interface in org.apache.taverna.platform.run.api">RunProfileException</a>, |
| <a href="https://taverna.incubator.apache.org/javadoc/taverna-engine/org/apache/taverna/platform/run/api/InvalidRunIdException.html?is-external=true" title="class or interface in org.apache.taverna.platform.run.api">InvalidRunIdException</a>, |
| <a href="https://taverna.incubator.apache.org/javadoc/taverna-engine/org/apache/taverna/platform/run/api/RunStateException.html?is-external=true" title="class or interface in org.apache.taverna.platform.run.api">RunStateException</a>, |
| <a href="https://taverna.incubator.apache.org/javadoc/taverna-engine/org/apache/taverna/platform/execution/api/InvalidExecutionIdException.html?is-external=true" title="class or interface in org.apache.taverna.platform.execution.api">InvalidExecutionIdException</a>, |
| <a href="../../../../org/apache/taverna/commandline/exceptions/DatabaseConfigurationException.html" title="class in org.apache.taverna.commandline.exceptions">DatabaseConfigurationException</a></pre> |
| <dl> |
| <dt><span class="throwsLabel">Throws:</span></dt> |
| <dd><code><a href="../../../../org/apache/taverna/commandline/exceptions/InputMismatchException.html" title="class in org.apache.taverna.commandline.exceptions">InputMismatchException</a></code></dd> |
| <dd><code><a href="../../../../org/apache/taverna/commandline/exceptions/InvalidOptionException.html" title="class in org.apache.taverna.commandline.exceptions">InvalidOptionException</a></code></dd> |
| <dd><code><a href="https://taverna.incubator.apache.org/javadoc/taverna-engine/org/apache/taverna/security/credentialmanager/CMException.html?is-external=true" title="class or interface in org.apache.taverna.security.credentialmanager">CMException</a></code></dd> |
| <dd><code><a href="../../../../org/apache/taverna/commandline/exceptions/OpenDataflowException.html" title="class in org.apache.taverna.commandline.exceptions">OpenDataflowException</a></code></dd> |
| <dd><code><a href="https://taverna.incubator.apache.org/javadoc/taverna-language/org/apache/taverna/scufl2/api/io/ReaderException.html?is-external=true" title="class or interface in org.apache.taverna.scufl2.api.io">ReaderException</a></code></dd> |
| <dd><code><a href="http://docs.oracle.com/javase/7/docs/api/java/io/IOException.html?is-external=true" title="class or interface in java.io">IOException</a></code></dd> |
| <dd><code><a href="https://taverna.incubator.apache.org/javadoc/taverna-language/org/apache/taverna/scufl2/validation/ValidationException.html?is-external=true" title="class or interface in org.apache.taverna.scufl2.validation">ValidationException</a></code></dd> |
| <dd><code><a href="../../../../org/apache/taverna/commandline/exceptions/ReadInputException.html" title="class in org.apache.taverna.commandline.exceptions">ReadInputException</a></code></dd> |
| <dd><code><a href="https://taverna.incubator.apache.org/javadoc/taverna-engine/org/apache/taverna/platform/execution/api/InvalidWorkflowException.html?is-external=true" title="class or interface in org.apache.taverna.platform.execution.api">InvalidWorkflowException</a></code></dd> |
| <dd><code><a href="https://taverna.incubator.apache.org/javadoc/taverna-engine/org/apache/taverna/platform/run/api/RunProfileException.html?is-external=true" title="class or interface in org.apache.taverna.platform.run.api">RunProfileException</a></code></dd> |
| <dd><code><a href="https://taverna.incubator.apache.org/javadoc/taverna-engine/org/apache/taverna/platform/run/api/InvalidRunIdException.html?is-external=true" title="class or interface in org.apache.taverna.platform.run.api">InvalidRunIdException</a></code></dd> |
| <dd><code><a href="https://taverna.incubator.apache.org/javadoc/taverna-engine/org/apache/taverna/platform/run/api/RunStateException.html?is-external=true" title="class or interface in org.apache.taverna.platform.run.api">RunStateException</a></code></dd> |
| <dd><code><a href="https://taverna.incubator.apache.org/javadoc/taverna-engine/org/apache/taverna/platform/execution/api/InvalidExecutionIdException.html?is-external=true" title="class or interface in org.apache.taverna.platform.execution.api">InvalidExecutionIdException</a></code></dd> |
| <dd><code><a href="../../../../org/apache/taverna/commandline/exceptions/DatabaseConfigurationException.html" title="class in org.apache.taverna.commandline.exceptions">DatabaseConfigurationException</a></code></dd> |
| </dl> |
| </li> |
| </ul> |
| <a name="validateWorkflowBundle-org.apache.taverna.scufl2.api.container.WorkflowBundle-"> |
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| <h4>validateWorkflowBundle</h4> |
| <pre>protected void validateWorkflowBundle(<a href="https://taverna.incubator.apache.org/javadoc/taverna-language/org/apache/taverna/scufl2/api/container/WorkflowBundle.html?is-external=true" title="class or interface in org.apache.taverna.scufl2.api.container">WorkflowBundle</a> workflowBundle) |
| throws <a href="https://taverna.incubator.apache.org/javadoc/taverna-language/org/apache/taverna/scufl2/validation/ValidationException.html?is-external=true" title="class or interface in org.apache.taverna.scufl2.validation">ValidationException</a></pre> |
| <dl> |
| <dt><span class="throwsLabel">Throws:</span></dt> |
| <dd><code><a href="https://taverna.incubator.apache.org/javadoc/taverna-language/org/apache/taverna/scufl2/validation/ValidationException.html?is-external=true" title="class or interface in org.apache.taverna.scufl2.validation">ValidationException</a></code></dd> |
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| <pre>protected void error(<a href="http://docs.oracle.com/javase/7/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</a> msg)</pre> |
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| <pre>protected void error(<a href="http://docs.oracle.com/javase/7/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</a> message, |
| <a href="http://docs.oracle.com/javase/7/docs/api/java/lang/Throwable.html?is-external=true" title="class or interface in java.lang">Throwable</a> e)</pre> |
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| <h4>setCommandLineOptions</h4> |
| <pre>public void setCommandLineOptions(<a href="../../../../org/apache/taverna/commandline/options/CommandLineOptions.html" title="interface in org.apache.taverna.commandline.options">CommandLineOptions</a> commandLineOptions)</pre> |
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| <h4>setRunService</h4> |
| <pre>public void setRunService(<a href="https://taverna.incubator.apache.org/javadoc/taverna-engine/org/apache/taverna/platform/run/api/RunService.html?is-external=true" title="class or interface in org.apache.taverna.platform.run.api">RunService</a> runService)</pre> |
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| <h4>setCredentialManager</h4> |
| <pre>public void setCredentialManager(<a href="https://taverna.incubator.apache.org/javadoc/taverna-engine/org/apache/taverna/security/credentialmanager/CredentialManager.html?is-external=true" title="class or interface in org.apache.taverna.security.credentialmanager">CredentialManager</a> credentialManager)</pre> |
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| <h4>setWorkflowBundleIO</h4> |
| <pre>public void setWorkflowBundleIO(<a href="https://taverna.incubator.apache.org/javadoc/taverna-language/org/apache/taverna/scufl2/api/io/WorkflowBundleIO.html?is-external=true" title="class or interface in org.apache.taverna.scufl2.api.io">WorkflowBundleIO</a> workflowBundleIO)</pre> |
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| <pre>public void setDatabaseConfiguration(<a href="https://taverna.incubator.apache.org/javadoc/taverna-engine/org/apache/taverna/configuration/database/DatabaseConfiguration.html?is-external=true" title="class or interface in org.apache.taverna.configuration.database">DatabaseConfiguration</a> databaseConfiguration)</pre> |
| <div class="block">Sets the databaseConfiguration.</div> |
| <dl> |
| <dt><span class="paramLabel">Parameters:</span></dt> |
| <dd><code>databaseConfiguration</code> - the new value of databaseConfiguration</dd> |
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| <h4>setDatabaseManager</h4> |
| <pre>public void setDatabaseManager(<a href="https://taverna.incubator.apache.org/javadoc/taverna-engine/org/apache/taverna/configuration/database/DatabaseManager.html?is-external=true" title="class or interface in org.apache.taverna.configuration.database">DatabaseManager</a> databaseManager)</pre> |
| <div class="block">Sets the databaseManager.</div> |
| <dl> |
| <dt><span class="paramLabel">Parameters:</span></dt> |
| <dd><code>databaseManager</code> - the new value of databaseManager</dd> |
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