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| <title>Index (Apache Taverna Command-line Tool 3.1.0-incubating API)</title> |
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| <div class="contentContainer"><a href="#I:A">A</a> <a href="#I:B">B</a> <a href="#I:C">C</a> <a href="#I:D">D</a> <a href="#I:E">E</a> <a href="#I:G">G</a> <a href="#I:H">H</a> <a href="#I:I">I</a> <a href="#I:M">M</a> <a href="#I:O">O</a> <a href="#I:R">R</a> <a href="#I:S">S</a> <a href="#I:T">T</a> <a href="#I:U">U</a> <a href="#I:V">V</a> <a name="I:A"> |
| <!-- --> |
| </a> |
| <h2 class="title">A</h2> |
| <dl> |
| <dt><a href="org/apache/taverna/commandline/exceptions/ArgumentsParsingException.html" title="class in org.apache.taverna.commandline.exceptions"><span class="typeNameLink">ArgumentsParsingException</span></a> - Exception in <a href="org/apache/taverna/commandline/exceptions/package-summary.html">org.apache.taverna.commandline.exceptions</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/exceptions/ArgumentsParsingException.html#ArgumentsParsingException-java.lang.String-">ArgumentsParsingException(String)</a></span> - Constructor for exception org.apache.taverna.commandline.exceptions.<a href="org/apache/taverna/commandline/exceptions/ArgumentsParsingException.html" title="class in org.apache.taverna.commandline.exceptions">ArgumentsParsingException</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/exceptions/ArgumentsParsingException.html#ArgumentsParsingException-java.lang.String-java.lang.Throwable-">ArgumentsParsingException(String, Throwable)</a></span> - Constructor for exception org.apache.taverna.commandline.exceptions.<a href="org/apache/taverna/commandline/exceptions/ArgumentsParsingException.html" title="class in org.apache.taverna.commandline.exceptions">ArgumentsParsingException</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html#askedForHelp--">askedForHelp()</a></span> - Method in class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html" title="class in org.apache.taverna.commandline">CommandLineOptionsImpl</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/options/CommandLineOptions.html#askedForHelp--">askedForHelp()</a></span> - Method in interface org.apache.taverna.commandline.options.<a href="org/apache/taverna/commandline/options/CommandLineOptions.html" title="interface in org.apache.taverna.commandline.options">CommandLineOptions</a></dt> |
| <dd> </dd> |
| </dl> |
| <a name="I:B"> |
| <!-- --> |
| </a> |
| <h2 class="title">B</h2> |
| <dl> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/data/ErrorValueHandler.html#buildErrorValueString-org.apache.taverna.databundle.ErrorDocument-">buildErrorValueString(ErrorDocument)</a></span> - Static method in class org.apache.taverna.commandline.data.<a href="org/apache/taverna/commandline/data/ErrorValueHandler.html" title="class in org.apache.taverna.commandline.data">ErrorValueHandler</a></dt> |
| <dd> |
| <div class="block">Creates a string representation of the ErrorValue.</div> |
| </dd> |
| </dl> |
| <a name="I:C"> |
| <!-- --> |
| </a> |
| <h2 class="title">C</h2> |
| <dl> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html#checkForInvalid--">checkForInvalid()</a></span> - Method in class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html" title="class in org.apache.taverna.commandline">CommandLineOptionsImpl</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/data/InputsHandler.html#checkProvidedInputs-java.util.Map-org.apache.taverna.commandline.options.CommandLineOptions-">checkProvidedInputs(Map<String, InputWorkflowPort>, CommandLineOptions)</a></span> - Method in class org.apache.taverna.commandline.data.<a href="org/apache/taverna/commandline/data/InputsHandler.html" title="class in org.apache.taverna.commandline.data">InputsHandler</a></dt> |
| <dd> </dd> |
| <dt><a href="org/apache/taverna/commandline/exceptions/CommandLineMasterPasswordException.html" title="class in org.apache.taverna.commandline.exceptions"><span class="typeNameLink">CommandLineMasterPasswordException</span></a> - Exception in <a href="org/apache/taverna/commandline/exceptions/package-summary.html">org.apache.taverna.commandline.exceptions</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/exceptions/CommandLineMasterPasswordException.html#CommandLineMasterPasswordException-java.lang.String-">CommandLineMasterPasswordException(String)</a></span> - Constructor for exception org.apache.taverna.commandline.exceptions.<a href="org/apache/taverna/commandline/exceptions/CommandLineMasterPasswordException.html" title="class in org.apache.taverna.commandline.exceptions">CommandLineMasterPasswordException</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/exceptions/CommandLineMasterPasswordException.html#CommandLineMasterPasswordException-java.lang.String-java.lang.Throwable-">CommandLineMasterPasswordException(String, Throwable)</a></span> - Constructor for exception org.apache.taverna.commandline.exceptions.<a href="org/apache/taverna/commandline/exceptions/CommandLineMasterPasswordException.html" title="class in org.apache.taverna.commandline.exceptions">CommandLineMasterPasswordException</a></dt> |
| <dd> </dd> |
| <dt><a href="org/apache/taverna/commandline/CommandLineMasterPasswordProvider.html" title="class in org.apache.taverna.commandline"><span class="typeNameLink">CommandLineMasterPasswordProvider</span></a> - Class in <a href="org/apache/taverna/commandline/package-summary.html">org.apache.taverna.commandline</a></dt> |
| <dd> |
| <div class="block">An implementation of <a href="https://taverna.incubator.apache.org/javadoc/taverna-engine/org/apache/taverna/security/credentialmanager/MasterPasswordProvider.html?is-external=true" title="class or interface in org.apache.taverna.security.credentialmanager"><code>MasterPasswordProvider</code></a> that reads Credential Manager's |
| master password from stdin (pipe or terminal) is -cmpassword option is present in command |
| line arguments.</div> |
| </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineMasterPasswordProvider.html#CommandLineMasterPasswordProvider-org.apache.taverna.commandline.options.CommandLineOptions-">CommandLineMasterPasswordProvider(CommandLineOptions)</a></span> - Constructor for class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineMasterPasswordProvider.html" title="class in org.apache.taverna.commandline">CommandLineMasterPasswordProvider</a></dt> |
| <dd> </dd> |
| <dt><a href="org/apache/taverna/commandline/options/CommandLineOptions.html" title="interface in org.apache.taverna.commandline.options"><span class="typeNameLink">CommandLineOptions</span></a> - Interface in <a href="org/apache/taverna/commandline/options/package-summary.html">org.apache.taverna.commandline.options</a></dt> |
| <dd> </dd> |
| <dt><a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html" title="class in org.apache.taverna.commandline"><span class="typeNameLink">CommandLineOptionsImpl</span></a> - Class in <a href="org/apache/taverna/commandline/package-summary.html">org.apache.taverna.commandline</a></dt> |
| <dd> |
| <div class="block">Handles the processing of command line arguments for enacting a workflow.</div> |
| </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html#CommandLineOptionsImpl-java.lang.String:A-">CommandLineOptionsImpl(String[])</a></span> - Constructor for class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html" title="class in org.apache.taverna.commandline">CommandLineOptionsImpl</a></dt> |
| <dd> </dd> |
| <dt><a href="org/apache/taverna/commandline/CommandLineTool.html" title="class in org.apache.taverna.commandline"><span class="typeNameLink">CommandLineTool</span></a> - Class in <a href="org/apache/taverna/commandline/package-summary.html">org.apache.taverna.commandline</a></dt> |
| <dd> |
| <div class="block">A utility class that wraps the process of executing a workflow, allowing workflows to be easily |
| executed independently of the GUI.</div> |
| </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineTool.html#CommandLineTool--">CommandLineTool()</a></span> - Constructor for class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineTool.html" title="class in org.apache.taverna.commandline">CommandLineTool</a></dt> |
| <dd> </dd> |
| <dt><a href="org/apache/taverna/commandline/CommandLineUtils.html" title="class in org.apache.taverna.commandline"><span class="typeNameLink">CommandLineUtils</span></a> - Class in <a href="org/apache/taverna/commandline/package-summary.html">org.apache.taverna.commandline</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineUtils.html#CommandLineUtils--">CommandLineUtils()</a></span> - Constructor for class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineUtils.html" title="class in org.apache.taverna.commandline">CommandLineUtils</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/data/DatabaseConfigurationHandler.html#configureDatabase--">configureDatabase()</a></span> - Method in class org.apache.taverna.commandline.data.<a href="org/apache/taverna/commandline/data/DatabaseConfigurationHandler.html" title="class in org.apache.taverna.commandline.data">DatabaseConfigurationHandler</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/options/CommandLineOptions.html#CREDENTIAL_MANAGER_DIR_OPTION">CREDENTIAL_MANAGER_DIR_OPTION</a></span> - Static variable in interface org.apache.taverna.commandline.options.<a href="org/apache/taverna/commandline/options/CommandLineOptions.html" title="interface in org.apache.taverna.commandline.options">CommandLineOptions</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/options/CommandLineOptions.html#CREDENTIAL_MANAGER_PASSWORD_OPTION">CREDENTIAL_MANAGER_PASSWORD_OPTION</a></span> - Static variable in interface org.apache.taverna.commandline.options.<a href="org/apache/taverna/commandline/options/CommandLineOptions.html" title="interface in org.apache.taverna.commandline.options">CommandLineOptions</a></dt> |
| <dd> </dd> |
| </dl> |
| <a name="I:D"> |
| <!-- --> |
| </a> |
| <h2 class="title">D</h2> |
| <dl> |
| <dt><a href="org/apache/taverna/commandline/exceptions/DatabaseConfigurationException.html" title="class in org.apache.taverna.commandline.exceptions"><span class="typeNameLink">DatabaseConfigurationException</span></a> - Exception in <a href="org/apache/taverna/commandline/exceptions/package-summary.html">org.apache.taverna.commandline.exceptions</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/exceptions/DatabaseConfigurationException.html#DatabaseConfigurationException--">DatabaseConfigurationException()</a></span> - Constructor for exception org.apache.taverna.commandline.exceptions.<a href="org/apache/taverna/commandline/exceptions/DatabaseConfigurationException.html" title="class in org.apache.taverna.commandline.exceptions">DatabaseConfigurationException</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/exceptions/DatabaseConfigurationException.html#DatabaseConfigurationException-java.lang.String-">DatabaseConfigurationException(String)</a></span> - Constructor for exception org.apache.taverna.commandline.exceptions.<a href="org/apache/taverna/commandline/exceptions/DatabaseConfigurationException.html" title="class in org.apache.taverna.commandline.exceptions">DatabaseConfigurationException</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/exceptions/DatabaseConfigurationException.html#DatabaseConfigurationException-java.lang.Throwable-">DatabaseConfigurationException(Throwable)</a></span> - Constructor for exception org.apache.taverna.commandline.exceptions.<a href="org/apache/taverna/commandline/exceptions/DatabaseConfigurationException.html" title="class in org.apache.taverna.commandline.exceptions">DatabaseConfigurationException</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/exceptions/DatabaseConfigurationException.html#DatabaseConfigurationException-java.lang.String-java.lang.Throwable-">DatabaseConfigurationException(String, Throwable)</a></span> - Constructor for exception org.apache.taverna.commandline.exceptions.<a href="org/apache/taverna/commandline/exceptions/DatabaseConfigurationException.html" title="class in org.apache.taverna.commandline.exceptions">DatabaseConfigurationException</a></dt> |
| <dd> </dd> |
| <dt><a href="org/apache/taverna/commandline/data/DatabaseConfigurationHandler.html" title="class in org.apache.taverna.commandline.data"><span class="typeNameLink">DatabaseConfigurationHandler</span></a> - Class in <a href="org/apache/taverna/commandline/data/package-summary.html">org.apache.taverna.commandline.data</a></dt> |
| <dd> |
| <div class="block">Handles the initialisation and configuration of the data source according to |
| the command line arguments, or a properties file.</div> |
| </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/data/DatabaseConfigurationHandler.html#DatabaseConfigurationHandler-org.apache.taverna.commandline.options.CommandLineOptions-org.apache.taverna.configuration.database.DatabaseConfiguration-org.apache.taverna.configuration.database.DatabaseManager-">DatabaseConfigurationHandler(CommandLineOptions, DatabaseConfiguration, DatabaseManager)</a></span> - Constructor for class org.apache.taverna.commandline.data.<a href="org/apache/taverna/commandline/data/DatabaseConfigurationHandler.html" title="class in org.apache.taverna.commandline.data">DatabaseConfigurationHandler</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html#displayHelp--">displayHelp()</a></span> - Method in class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html" title="class in org.apache.taverna.commandline">CommandLineOptionsImpl</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html#displayHelp-boolean-">displayHelp(boolean)</a></span> - Method in class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html" title="class in org.apache.taverna.commandline">CommandLineOptionsImpl</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/options/CommandLineOptions.html#displayHelp--">displayHelp()</a></span> - Method in interface org.apache.taverna.commandline.options.<a href="org/apache/taverna/commandline/options/CommandLineOptions.html" title="interface in org.apache.taverna.commandline.options">CommandLineOptions</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/options/CommandLineOptions.html#displayHelp-boolean-">displayHelp(boolean)</a></span> - Method in interface org.apache.taverna.commandline.options.<a href="org/apache/taverna/commandline/options/CommandLineOptions.html" title="interface in org.apache.taverna.commandline.options">CommandLineOptions</a></dt> |
| <dd> </dd> |
| </dl> |
| <a name="I:E"> |
| <!-- --> |
| </a> |
| <h2 class="title">E</h2> |
| <dl> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineTool.html#error-java.lang.String-">error(String)</a></span> - Method in class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineTool.html" title="class in org.apache.taverna.commandline">CommandLineTool</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineTool.html#error-java.lang.String-java.lang.Throwable-">error(String, Throwable)</a></span> - Method in class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineTool.html" title="class in org.apache.taverna.commandline">CommandLineTool</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineTool.html#error-java.lang.Throwable-">error(Throwable)</a></span> - Method in class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineTool.html" title="class in org.apache.taverna.commandline">CommandLineTool</a></dt> |
| <dd> </dd> |
| <dt><a href="org/apache/taverna/commandline/data/ErrorValueHandler.html" title="class in org.apache.taverna.commandline.data"><span class="typeNameLink">ErrorValueHandler</span></a> - Class in <a href="org/apache/taverna/commandline/data/package-summary.html">org.apache.taverna.commandline.data</a></dt> |
| <dd> |
| <div class="block">Handles ErrorValues and transforming them into String representations |
| that can be stored as a file, or within a Baclava document.</div> |
| </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/data/ErrorValueHandler.html#ErrorValueHandler--">ErrorValueHandler()</a></span> - Constructor for class org.apache.taverna.commandline.data.<a href="org/apache/taverna/commandline/data/ErrorValueHandler.html" title="class in org.apache.taverna.commandline.data">ErrorValueHandler</a></dt> |
| <dd> </dd> |
| </dl> |
| <a name="I:G"> |
| <!-- --> |
| </a> |
| <h2 class="title">G</h2> |
| <dl> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html#getArgs--">getArgs()</a></span> - Method in class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html" title="class in org.apache.taverna.commandline">CommandLineOptionsImpl</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/options/CommandLineOptions.html#getArgs--">getArgs()</a></span> - Method in interface org.apache.taverna.commandline.options.<a href="org/apache/taverna/commandline/options/CommandLineOptions.html" title="interface in org.apache.taverna.commandline.options">CommandLineOptions</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html#getCredentialManagerDir--">getCredentialManagerDir()</a></span> - Method in class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html" title="class in org.apache.taverna.commandline">CommandLineOptionsImpl</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/options/CommandLineOptions.html#getCredentialManagerDir--">getCredentialManagerDir()</a></span> - Method in interface org.apache.taverna.commandline.options.<a href="org/apache/taverna/commandline/options/CommandLineOptions.html" title="interface in org.apache.taverna.commandline.options">CommandLineOptions</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html#getDatabasePort--">getDatabasePort()</a></span> - Method in class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html" title="class in org.apache.taverna.commandline">CommandLineOptionsImpl</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/options/CommandLineOptions.html#getDatabasePort--">getDatabasePort()</a></span> - Method in interface org.apache.taverna.commandline.options.<a href="org/apache/taverna/commandline/options/CommandLineOptions.html" title="interface in org.apache.taverna.commandline.options">CommandLineOptions</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html#getDatabaseProperties--">getDatabaseProperties()</a></span> - Method in class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html" title="class in org.apache.taverna.commandline">CommandLineOptionsImpl</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/options/CommandLineOptions.html#getDatabaseProperties--">getDatabaseProperties()</a></span> - Method in interface org.apache.taverna.commandline.options.<a href="org/apache/taverna/commandline/options/CommandLineOptions.html" title="interface in org.apache.taverna.commandline.options">CommandLineOptions</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/data/DatabaseConfigurationHandler.html#getDBConfig--">getDBConfig()</a></span> - Method in class org.apache.taverna.commandline.data.<a href="org/apache/taverna/commandline/data/DatabaseConfigurationHandler.html" title="class in org.apache.taverna.commandline.data">DatabaseConfigurationHandler</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html#getInputBundle--">getInputBundle()</a></span> - Method in class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html" title="class in org.apache.taverna.commandline">CommandLineOptionsImpl</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/options/CommandLineOptions.html#getInputBundle--">getInputBundle()</a></span> - Method in interface org.apache.taverna.commandline.options.<a href="org/apache/taverna/commandline/options/CommandLineOptions.html" title="interface in org.apache.taverna.commandline.options">CommandLineOptions</a></dt> |
| <dd> |
| <div class="block">Return the path for a data bundle which should be used for |
| input values.</div> |
| </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html#getInputFiles--">getInputFiles()</a></span> - Method in class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html" title="class in org.apache.taverna.commandline">CommandLineOptionsImpl</a></dt> |
| <dd> |
| <div class="block">Returns an array that alternates between a portname and path to a file |
| containing the input values.</div> |
| </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/options/CommandLineOptions.html#getInputFiles--">getInputFiles()</a></span> - Method in interface org.apache.taverna.commandline.options.<a href="org/apache/taverna/commandline/options/CommandLineOptions.html" title="interface in org.apache.taverna.commandline.options">CommandLineOptions</a></dt> |
| <dd> |
| <div class="block">Returns an array that alternates between a portname and path to a file |
| containing the input values.</div> |
| </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html#getInputValues--">getInputValues()</a></span> - Method in class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html" title="class in org.apache.taverna.commandline">CommandLineOptionsImpl</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/options/CommandLineOptions.html#getInputValues--">getInputValues()</a></span> - Method in interface org.apache.taverna.commandline.options.<a href="org/apache/taverna/commandline/options/CommandLineOptions.html" title="interface in org.apache.taverna.commandline.options">CommandLineOptions</a></dt> |
| <dd> |
| <div class="block">Returns an array that alternates between a portname and an |
| input values.</div> |
| </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html#getLogFile--">getLogFile()</a></span> - Method in class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html" title="class in org.apache.taverna.commandline">CommandLineOptionsImpl</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/options/CommandLineOptions.html#getLogFile--">getLogFile()</a></span> - Method in interface org.apache.taverna.commandline.options.<a href="org/apache/taverna/commandline/options/CommandLineOptions.html" title="interface in org.apache.taverna.commandline.options">CommandLineOptions</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineMasterPasswordProvider.html#getMasterPassword-boolean-">getMasterPassword(boolean)</a></span> - Method in class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineMasterPasswordProvider.html" title="class in org.apache.taverna.commandline">CommandLineMasterPasswordProvider</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/exceptions/InputMismatchException.html#getMessage--">getMessage()</a></span> - Method in exception org.apache.taverna.commandline.exceptions.<a href="org/apache/taverna/commandline/exceptions/InputMismatchException.html" title="class in org.apache.taverna.commandline.exceptions">InputMismatchException</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html#getOptions--">getOptions()</a></span> - Method in class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html" title="class in org.apache.taverna.commandline">CommandLineOptionsImpl</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html#getOutputDirectory--">getOutputDirectory()</a></span> - Method in class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html" title="class in org.apache.taverna.commandline">CommandLineOptionsImpl</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/options/CommandLineOptions.html#getOutputDirectory--">getOutputDirectory()</a></span> - Method in interface org.apache.taverna.commandline.options.<a href="org/apache/taverna/commandline/options/CommandLineOptions.html" title="interface in org.apache.taverna.commandline.options">CommandLineOptions</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineMasterPasswordProvider.html#getProviderPriority--">getProviderPriority()</a></span> - Method in class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineMasterPasswordProvider.html" title="class in org.apache.taverna.commandline">CommandLineMasterPasswordProvider</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html#getSaveResultsToBundle--">getSaveResultsToBundle()</a></span> - Method in class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html" title="class in org.apache.taverna.commandline">CommandLineOptionsImpl</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/options/CommandLineOptions.html#getSaveResultsToBundle--">getSaveResultsToBundle()</a></span> - Method in interface org.apache.taverna.commandline.options.<a href="org/apache/taverna/commandline/options/CommandLineOptions.html" title="interface in org.apache.taverna.commandline.options">CommandLineOptions</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html#getStartDatabase--">getStartDatabase()</a></span> - Method in class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html" title="class in org.apache.taverna.commandline">CommandLineOptionsImpl</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/options/CommandLineOptions.html#getStartDatabase--">getStartDatabase()</a></span> - Method in interface org.apache.taverna.commandline.options.<a href="org/apache/taverna/commandline/options/CommandLineOptions.html" title="interface in org.apache.taverna.commandline.options">CommandLineOptions</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html#getStartDatabaseOnly--">getStartDatabaseOnly()</a></span> - Method in class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html" title="class in org.apache.taverna.commandline">CommandLineOptionsImpl</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/options/CommandLineOptions.html#getStartDatabaseOnly--">getStartDatabaseOnly()</a></span> - Method in interface org.apache.taverna.commandline.options.<a href="org/apache/taverna/commandline/options/CommandLineOptions.html" title="interface in org.apache.taverna.commandline.options">CommandLineOptions</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html#getWorkflow--">getWorkflow()</a></span> - Method in class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html" title="class in org.apache.taverna.commandline">CommandLineOptionsImpl</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/options/CommandLineOptions.html#getWorkflow--">getWorkflow()</a></span> - Method in interface org.apache.taverna.commandline.options.<a href="org/apache/taverna/commandline/options/CommandLineOptions.html" title="interface in org.apache.taverna.commandline.options">CommandLineOptions</a></dt> |
| <dd> </dd> |
| </dl> |
| <a name="I:H"> |
| <!-- --> |
| </a> |
| <h2 class="title">H</h2> |
| <dl> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html#hasDelimiterFor-java.lang.String-">hasDelimiterFor(String)</a></span> - Method in class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html" title="class in org.apache.taverna.commandline">CommandLineOptionsImpl</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/options/CommandLineOptions.html#hasDelimiterFor-java.lang.String-">hasDelimiterFor(String)</a></span> - Method in interface org.apache.taverna.commandline.options.<a href="org/apache/taverna/commandline/options/CommandLineOptions.html" title="interface in org.apache.taverna.commandline.options">CommandLineOptions</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html#hasInputBundle--">hasInputBundle()</a></span> - Method in class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html" title="class in org.apache.taverna.commandline">CommandLineOptionsImpl</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/options/CommandLineOptions.html#hasInputBundle--">hasInputBundle()</a></span> - Method in interface org.apache.taverna.commandline.options.<a href="org/apache/taverna/commandline/options/CommandLineOptions.html" title="interface in org.apache.taverna.commandline.options">CommandLineOptions</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html#hasInputFiles--">hasInputFiles()</a></span> - Method in class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html" title="class in org.apache.taverna.commandline">CommandLineOptionsImpl</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/options/CommandLineOptions.html#hasInputFiles--">hasInputFiles()</a></span> - Method in interface org.apache.taverna.commandline.options.<a href="org/apache/taverna/commandline/options/CommandLineOptions.html" title="interface in org.apache.taverna.commandline.options">CommandLineOptions</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html#hasInputValues--">hasInputValues()</a></span> - Method in class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html" title="class in org.apache.taverna.commandline">CommandLineOptionsImpl</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/options/CommandLineOptions.html#hasInputValues--">hasInputValues()</a></span> - Method in interface org.apache.taverna.commandline.options.<a href="org/apache/taverna/commandline/options/CommandLineOptions.html" title="interface in org.apache.taverna.commandline.options">CommandLineOptions</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html#hasLogFile--">hasLogFile()</a></span> - Method in class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html" title="class in org.apache.taverna.commandline">CommandLineOptionsImpl</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/options/CommandLineOptions.html#hasLogFile--">hasLogFile()</a></span> - Method in interface org.apache.taverna.commandline.options.<a href="org/apache/taverna/commandline/options/CommandLineOptions.html" title="interface in org.apache.taverna.commandline.options">CommandLineOptions</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html#hasOption-java.lang.String-">hasOption(String)</a></span> - Method in class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html" title="class in org.apache.taverna.commandline">CommandLineOptionsImpl</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/options/CommandLineOptions.html#hasOption-java.lang.String-">hasOption(String)</a></span> - Method in interface org.apache.taverna.commandline.options.<a href="org/apache/taverna/commandline/options/CommandLineOptions.html" title="interface in org.apache.taverna.commandline.options">CommandLineOptions</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html#hasSaveResultsToBundle--">hasSaveResultsToBundle()</a></span> - Method in class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html" title="class in org.apache.taverna.commandline">CommandLineOptionsImpl</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/options/CommandLineOptions.html#hasSaveResultsToBundle--">hasSaveResultsToBundle()</a></span> - Method in interface org.apache.taverna.commandline.options.<a href="org/apache/taverna/commandline/options/CommandLineOptions.html" title="interface in org.apache.taverna.commandline.options">CommandLineOptions</a></dt> |
| <dd> </dd> |
| </dl> |
| <a name="I:I"> |
| <!-- --> |
| </a> |
| <h2 class="title">I</h2> |
| <dl> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html#inputDelimiter-java.lang.String-">inputDelimiter(String)</a></span> - Method in class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html" title="class in org.apache.taverna.commandline">CommandLineOptionsImpl</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/options/CommandLineOptions.html#inputDelimiter-java.lang.String-">inputDelimiter(String)</a></span> - Method in interface org.apache.taverna.commandline.options.<a href="org/apache/taverna/commandline/options/CommandLineOptions.html" title="interface in org.apache.taverna.commandline.options">CommandLineOptions</a></dt> |
| <dd> </dd> |
| <dt><a href="org/apache/taverna/commandline/exceptions/InputMismatchException.html" title="class in org.apache.taverna.commandline.exceptions"><span class="typeNameLink">InputMismatchException</span></a> - Exception in <a href="org/apache/taverna/commandline/exceptions/package-summary.html">org.apache.taverna.commandline.exceptions</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/exceptions/InputMismatchException.html#InputMismatchException-java.lang.String-java.util.Set-java.util.Set-">InputMismatchException(String, Set<String>, Set<String>)</a></span> - Constructor for exception org.apache.taverna.commandline.exceptions.<a href="org/apache/taverna/commandline/exceptions/InputMismatchException.html" title="class in org.apache.taverna.commandline.exceptions">InputMismatchException</a></dt> |
| <dd> </dd> |
| <dt><a href="org/apache/taverna/commandline/data/InputsHandler.html" title="class in org.apache.taverna.commandline.data"><span class="typeNameLink">InputsHandler</span></a> - Class in <a href="org/apache/taverna/commandline/data/package-summary.html">org.apache.taverna.commandline.data</a></dt> |
| <dd> |
| <div class="block">Handles the reading, or processing, or input values according to arguments provided to the |
| commandline.</div> |
| </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/data/InputsHandler.html#InputsHandler--">InputsHandler()</a></span> - Constructor for class org.apache.taverna.commandline.data.<a href="org/apache/taverna/commandline/data/InputsHandler.html" title="class in org.apache.taverna.commandline.data">InputsHandler</a></dt> |
| <dd> </dd> |
| <dt><a href="org/apache/taverna/commandline/exceptions/InvalidOptionException.html" title="class in org.apache.taverna.commandline.exceptions"><span class="typeNameLink">InvalidOptionException</span></a> - Exception in <a href="org/apache/taverna/commandline/exceptions/package-summary.html">org.apache.taverna.commandline.exceptions</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/exceptions/InvalidOptionException.html#InvalidOptionException-java.lang.String-">InvalidOptionException(String)</a></span> - Constructor for exception org.apache.taverna.commandline.exceptions.<a href="org/apache/taverna/commandline/exceptions/InvalidOptionException.html" title="class in org.apache.taverna.commandline.exceptions">InvalidOptionException</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html#isClientServer--">isClientServer()</a></span> - Method in class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html" title="class in org.apache.taverna.commandline">CommandLineOptionsImpl</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/options/CommandLineOptions.html#isClientServer--">isClientServer()</a></span> - Method in interface org.apache.taverna.commandline.options.<a href="org/apache/taverna/commandline/options/CommandLineOptions.html" title="interface in org.apache.taverna.commandline.options">CommandLineOptions</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html#isEmbedded--">isEmbedded()</a></span> - Method in class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html" title="class in org.apache.taverna.commandline">CommandLineOptionsImpl</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/options/CommandLineOptions.html#isEmbedded--">isEmbedded()</a></span> - Method in interface org.apache.taverna.commandline.options.<a href="org/apache/taverna/commandline/options/CommandLineOptions.html" title="interface in org.apache.taverna.commandline.options">CommandLineOptions</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html#isInMemory--">isInMemory()</a></span> - Method in class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html" title="class in org.apache.taverna.commandline">CommandLineOptionsImpl</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/options/CommandLineOptions.html#isInMemory--">isInMemory()</a></span> - Method in interface org.apache.taverna.commandline.options.<a href="org/apache/taverna/commandline/options/CommandLineOptions.html" title="interface in org.apache.taverna.commandline.options">CommandLineOptions</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html#isProvenanceEnabled--">isProvenanceEnabled()</a></span> - Method in class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html" title="class in org.apache.taverna.commandline">CommandLineOptionsImpl</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/options/CommandLineOptions.html#isProvenanceEnabled--">isProvenanceEnabled()</a></span> - Method in interface org.apache.taverna.commandline.options.<a href="org/apache/taverna/commandline/options/CommandLineOptions.html" title="interface in org.apache.taverna.commandline.options">CommandLineOptions</a></dt> |
| <dd> </dd> |
| </dl> |
| <a name="I:M"> |
| <!-- --> |
| </a> |
| <h2 class="title">M</h2> |
| <dl> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/TavernaCommandLine.html#main-java.lang.String:A-">main(String[])</a></span> - Static method in class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/TavernaCommandLine.html" title="class in org.apache.taverna.commandline">TavernaCommandLine</a></dt> |
| <dd> |
| <div class="block">Starts the Taverna Command-line Tool.</div> |
| </dd> |
| </dl> |
| <a name="I:O"> |
| <!-- --> |
| </a> |
| <h2 class="title">O</h2> |
| <dl> |
| <dt><a href="org/apache/taverna/commandline/exceptions/OpenDataflowException.html" title="class in org.apache.taverna.commandline.exceptions"><span class="typeNameLink">OpenDataflowException</span></a> - Exception in <a href="org/apache/taverna/commandline/exceptions/package-summary.html">org.apache.taverna.commandline.exceptions</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/exceptions/OpenDataflowException.html#OpenDataflowException--">OpenDataflowException()</a></span> - Constructor for exception org.apache.taverna.commandline.exceptions.<a href="org/apache/taverna/commandline/exceptions/OpenDataflowException.html" title="class in org.apache.taverna.commandline.exceptions">OpenDataflowException</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/exceptions/OpenDataflowException.html#OpenDataflowException-java.lang.String-">OpenDataflowException(String)</a></span> - Constructor for exception org.apache.taverna.commandline.exceptions.<a href="org/apache/taverna/commandline/exceptions/OpenDataflowException.html" title="class in org.apache.taverna.commandline.exceptions">OpenDataflowException</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/exceptions/OpenDataflowException.html#OpenDataflowException-java.lang.Throwable-">OpenDataflowException(Throwable)</a></span> - Constructor for exception org.apache.taverna.commandline.exceptions.<a href="org/apache/taverna/commandline/exceptions/OpenDataflowException.html" title="class in org.apache.taverna.commandline.exceptions">OpenDataflowException</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/exceptions/OpenDataflowException.html#OpenDataflowException-java.lang.String-java.lang.Throwable-">OpenDataflowException(String, Throwable)</a></span> - Constructor for exception org.apache.taverna.commandline.exceptions.<a href="org/apache/taverna/commandline/exceptions/OpenDataflowException.html" title="class in org.apache.taverna.commandline.exceptions">OpenDataflowException</a></dt> |
| <dd> </dd> |
| <dt><a href="org/apache/taverna/commandline/package-summary.html">org.apache.taverna.commandline</a> - package org.apache.taverna.commandline</dt> |
| <dd> </dd> |
| <dt><a href="org/apache/taverna/commandline/data/package-summary.html">org.apache.taverna.commandline.data</a> - package org.apache.taverna.commandline.data</dt> |
| <dd> </dd> |
| <dt><a href="org/apache/taverna/commandline/exceptions/package-summary.html">org.apache.taverna.commandline.exceptions</a> - package org.apache.taverna.commandline.exceptions</dt> |
| <dd> </dd> |
| <dt><a href="org/apache/taverna/commandline/options/package-summary.html">org.apache.taverna.commandline.options</a> - package org.apache.taverna.commandline.options</dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/data/DatabaseConfigurationHandler.html#overrideDefaults--">overrideDefaults()</a></span> - Method in class org.apache.taverna.commandline.data.<a href="org/apache/taverna/commandline/data/DatabaseConfigurationHandler.html" title="class in org.apache.taverna.commandline.data">DatabaseConfigurationHandler</a></dt> |
| <dd> </dd> |
| </dl> |
| <a name="I:R"> |
| <!-- --> |
| </a> |
| <h2 class="title">R</h2> |
| <dl> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/data/DatabaseConfigurationHandler.html#readConfigirationFromFile-java.lang.String-">readConfigirationFromFile(String)</a></span> - Method in class org.apache.taverna.commandline.data.<a href="org/apache/taverna/commandline/data/DatabaseConfigurationHandler.html" title="class in org.apache.taverna.commandline.data">DatabaseConfigurationHandler</a></dt> |
| <dd> </dd> |
| <dt><a href="org/apache/taverna/commandline/exceptions/ReadInputException.html" title="class in org.apache.taverna.commandline.exceptions"><span class="typeNameLink">ReadInputException</span></a> - Exception in <a href="org/apache/taverna/commandline/exceptions/package-summary.html">org.apache.taverna.commandline.exceptions</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/exceptions/ReadInputException.html#ReadInputException-java.lang.String-">ReadInputException(String)</a></span> - Constructor for exception org.apache.taverna.commandline.exceptions.<a href="org/apache/taverna/commandline/exceptions/ReadInputException.html" title="class in org.apache.taverna.commandline.exceptions">ReadInputException</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/exceptions/ReadInputException.html#ReadInputException-java.lang.String-java.lang.Throwable-">ReadInputException(String, Throwable)</a></span> - Constructor for exception org.apache.taverna.commandline.exceptions.<a href="org/apache/taverna/commandline/exceptions/ReadInputException.html" title="class in org.apache.taverna.commandline.exceptions">ReadInputException</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/data/InputsHandler.html#registerInputs-java.util.Map-org.apache.taverna.commandline.options.CommandLineOptions-">registerInputs(Map<String, InputWorkflowPort>, CommandLineOptions)</a></span> - Method in class org.apache.taverna.commandline.data.<a href="org/apache/taverna/commandline/data/InputsHandler.html" title="class in org.apache.taverna.commandline.data">InputsHandler</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineTool.html#run--">run()</a></span> - Method in class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineTool.html" title="class in org.apache.taverna.commandline">CommandLineTool</a></dt> |
| <dd> </dd> |
| </dl> |
| <a name="I:S"> |
| <!-- --> |
| </a> |
| <h2 class="title">S</h2> |
| <dl> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineUtils.html#safeIsSameFile-java.nio.file.Path-java.nio.file.Path-">safeIsSameFile(Path, Path)</a></span> - Static method in class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineUtils.html" title="class in org.apache.taverna.commandline">CommandLineUtils</a></dt> |
| <dd> </dd> |
| <dt><a href="org/apache/taverna/commandline/exceptions/SaveResultsException.html" title="class in org.apache.taverna.commandline.exceptions"><span class="typeNameLink">SaveResultsException</span></a> - Exception in <a href="org/apache/taverna/commandline/exceptions/package-summary.html">org.apache.taverna.commandline.exceptions</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/exceptions/SaveResultsException.html#SaveResultsException-java.lang.String-">SaveResultsException(String)</a></span> - Constructor for exception org.apache.taverna.commandline.exceptions.<a href="org/apache/taverna/commandline/exceptions/SaveResultsException.html" title="class in org.apache.taverna.commandline.exceptions">SaveResultsException</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/exceptions/SaveResultsException.html#SaveResultsException-java.lang.String-java.lang.Throwable-">SaveResultsException(String, Throwable)</a></span> - Constructor for exception org.apache.taverna.commandline.exceptions.<a href="org/apache/taverna/commandline/exceptions/SaveResultsException.html" title="class in org.apache.taverna.commandline.exceptions">SaveResultsException</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/data/SaveResultsHandler.html#saveResultsForPort-java.lang.String-java.nio.file.Path-">saveResultsForPort(String, Path)</a></span> - Method in class org.apache.taverna.commandline.data.<a href="org/apache/taverna/commandline/data/SaveResultsHandler.html" title="class in org.apache.taverna.commandline.data">SaveResultsHandler</a></dt> |
| <dd> |
| <div class="block">Given the Data on an output port, saves the data on a disk in the |
| output directory.</div> |
| </dd> |
| <dt><a href="org/apache/taverna/commandline/data/SaveResultsHandler.html" title="class in org.apache.taverna.commandline.data"><span class="typeNameLink">SaveResultsHandler</span></a> - Class in <a href="org/apache/taverna/commandline/data/package-summary.html">org.apache.taverna.commandline.data</a></dt> |
| <dd> |
| <div class="block">Handles all recording of results as they are received by the <code>CommandLineResultListener</code> or |
| when the workflow enactment has completed.</div> |
| </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/data/SaveResultsHandler.html#SaveResultsHandler-java.io.File-">SaveResultsHandler(File)</a></span> - Constructor for class org.apache.taverna.commandline.data.<a href="org/apache/taverna/commandline/data/SaveResultsHandler.html" title="class in org.apache.taverna.commandline.data">SaveResultsHandler</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html#saveResultsToDirectory--">saveResultsToDirectory()</a></span> - Method in class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineOptionsImpl.html" title="class in org.apache.taverna.commandline">CommandLineOptionsImpl</a></dt> |
| <dd> |
| <div class="block">Save the results to a directory if -outputdir has been explicitly defined, |
| or if -bundlec has not been defined.</div> |
| </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/options/CommandLineOptions.html#saveResultsToDirectory--">saveResultsToDirectory()</a></span> - Method in interface org.apache.taverna.commandline.options.<a href="org/apache/taverna/commandline/options/CommandLineOptions.html" title="interface in org.apache.taverna.commandline.options">CommandLineOptions</a></dt> |
| <dd> |
| <div class="block">Save the results to a directory if -outputdir has been explicitly defined, |
| or if -outputdoc has not been defined.</div> |
| </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineTool.html#setCommandLineOptions-org.apache.taverna.commandline.options.CommandLineOptions-">setCommandLineOptions(CommandLineOptions)</a></span> - Method in class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineTool.html" title="class in org.apache.taverna.commandline">CommandLineTool</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineTool.html#setCredentialManager-org.apache.taverna.security.credentialmanager.CredentialManager-">setCredentialManager(CredentialManager)</a></span> - Method in class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineTool.html" title="class in org.apache.taverna.commandline">CommandLineTool</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineTool.html#setDatabaseConfiguration-org.apache.taverna.configuration.database.DatabaseConfiguration-">setDatabaseConfiguration(DatabaseConfiguration)</a></span> - Method in class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineTool.html" title="class in org.apache.taverna.commandline">CommandLineTool</a></dt> |
| <dd> |
| <div class="block">Sets the databaseConfiguration.</div> |
| </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineTool.html#setDatabaseManager-org.apache.taverna.configuration.database.DatabaseManager-">setDatabaseManager(DatabaseManager)</a></span> - Method in class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineTool.html" title="class in org.apache.taverna.commandline">CommandLineTool</a></dt> |
| <dd> |
| <div class="block">Sets the databaseManager.</div> |
| </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineMasterPasswordProvider.html#setMasterPassword-java.lang.String-">setMasterPassword(String)</a></span> - Method in class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineMasterPasswordProvider.html" title="class in org.apache.taverna.commandline">CommandLineMasterPasswordProvider</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineTool.html#setRunService-org.apache.taverna.platform.run.api.RunService-">setRunService(RunService)</a></span> - Method in class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineTool.html" title="class in org.apache.taverna.commandline">CommandLineTool</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineTool.html#setupAndExecute--">setupAndExecute()</a></span> - Method in class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineTool.html" title="class in org.apache.taverna.commandline">CommandLineTool</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineTool.html#setWorkflowBundleIO-org.apache.taverna.scufl2.api.io.WorkflowBundleIO-">setWorkflowBundleIO(WorkflowBundleIO)</a></span> - Method in class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineTool.html" title="class in org.apache.taverna.commandline">CommandLineTool</a></dt> |
| <dd> </dd> |
| </dl> |
| <a name="I:T"> |
| <!-- --> |
| </a> |
| <h2 class="title">T</h2> |
| <dl> |
| <dt><a href="org/apache/taverna/commandline/TavernaCommandLine.html" title="class in org.apache.taverna.commandline"><span class="typeNameLink">TavernaCommandLine</span></a> - Class in <a href="org/apache/taverna/commandline/package-summary.html">org.apache.taverna.commandline</a></dt> |
| <dd> |
| <div class="block">Main entry point for starting the Taverna Command-line Tool.</div> |
| </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/TavernaCommandLine.html#TavernaCommandLine--">TavernaCommandLine()</a></span> - Constructor for class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/TavernaCommandLine.html" title="class in org.apache.taverna.commandline">TavernaCommandLine</a></dt> |
| <dd> </dd> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/data/DatabaseConfigurationHandler.html#testDatabaseConnection--">testDatabaseConnection()</a></span> - Method in class org.apache.taverna.commandline.data.<a href="org/apache/taverna/commandline/data/DatabaseConfigurationHandler.html" title="class in org.apache.taverna.commandline.data">DatabaseConfigurationHandler</a></dt> |
| <dd> </dd> |
| </dl> |
| <a name="I:U"> |
| <!-- --> |
| </a> |
| <h2 class="title">U</h2> |
| <dl> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/data/DatabaseConfigurationHandler.html#useOptions--">useOptions()</a></span> - Method in class org.apache.taverna.commandline.data.<a href="org/apache/taverna/commandline/data/DatabaseConfigurationHandler.html" title="class in org.apache.taverna.commandline.data">DatabaseConfigurationHandler</a></dt> |
| <dd> </dd> |
| </dl> |
| <a name="I:V"> |
| <!-- --> |
| </a> |
| <h2 class="title">V</h2> |
| <dl> |
| <dt><span class="memberNameLink"><a href="org/apache/taverna/commandline/CommandLineTool.html#validateWorkflowBundle-org.apache.taverna.scufl2.api.container.WorkflowBundle-">validateWorkflowBundle(WorkflowBundle)</a></span> - Method in class org.apache.taverna.commandline.<a href="org/apache/taverna/commandline/CommandLineTool.html" title="class in org.apache.taverna.commandline">CommandLineTool</a></dt> |
| <dd> </dd> |
| </dl> |
| <a href="#I:A">A</a> <a href="#I:B">B</a> <a href="#I:C">C</a> <a href="#I:D">D</a> <a href="#I:E">E</a> <a href="#I:G">G</a> <a href="#I:H">H</a> <a href="#I:I">I</a> <a href="#I:M">M</a> <a href="#I:O">O</a> <a href="#I:R">R</a> <a href="#I:S">S</a> <a href="#I:T">T</a> <a href="#I:U">U</a> <a href="#I:V">V</a> </div> |
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