Apache Taverna Plugin Component (incubating)

Clone this repo:
  1. 2de49b3 use engine 3.1.0, commonactivities 2.1.0 by Stian Soiland-Reyes · 1 year, 3 months ago master
  2. c43cf43 remove duplicate ASF header by Stian Soiland-Reyes · 1 year, 3 months ago
  3. 84c2768 Note on building on Windows by Stian Soiland-Reyes · 1 year, 4 months ago
  4. 410b285 TAVERNA-935 use released parent/engine/osgi by Stian Soiland-Reyes · 1 year, 6 months ago
  5. 2d67e83 get ValidatorState by Stian Soiland-Reyes · 1 year, 7 months ago

Apache Taverna Component Plugin

Plugins for Apache Taverna for supporting bioinformatics-specific services.

Note this module relies on other Apache Taverna modules for the actual workflow execution.

License

(c) 2013-2014 University of Manchester

(c) 2014-2015 Apache Software Foundation

This product includes software developed at The Apache Software Foundation.

Licensed under the Apache License 2.0, see the file LICENSE for details.

The file NOTICE contain any additional attributions and details about embedded third-party libraries and source code.

Contribute

Please subscribe to and contact the [dev@taverna](http://taverna.incubator.apache.org/community/lists#dev mailing list) for any questions, suggestions and discussions about Apache Taverna.

Bugs and feature plannings are tracked in the Jira Issue tracker under the TAVERNA component Taverna Plugin Component. Feel free to add an issue!

To suggest changes to this source code, feel free to raise a GitHub pull request. Any contributions received are assumed to be covered by the Apache License 2.0. We might ask you to sign a Contributor License Agreement before accepting a larger contribution.

Disclaimer

Apache Taverna is an effort undergoing incubation at the Apache Software Foundation (ASF), sponsored by the Apache Incubator PMC.

Incubation is required of all newly accepted projects until a further review indicates that the infrastructure, communications, and decision making process have stabilized in a manner consistent with other successful ASF projects.

While incubation status is not necessarily a reflection of the completeness or stability of the code, it does indicate that the project has yet to be fully endorsed by the ASF.

Prerequisites

  • Java 1.7 or newer (tested with OpenJDK 1.8)
  • Apache Maven 3.2.5 or newer (older versions probably also work)

Building

To build, use

mvn clean install

This will build each module and run their tests.

Building on Windows

If you are building on Windows, ensure you unpack this source code to a folder with a short path name lenght, e.g. C:\src - as Windows has a limitation on the total path length which might otherwise prevent this code from building successfully.

Skipping tests

To skip the tests (these can be timeconsuming), use:

mvn clean install -DskipTests

If you are modifying this source code independent of the Apache Taverna project, you may not want to run the Rat Maven plugin that enforces Apache headers in every source file - to disable it, try:

mvn clean install -Drat.skip=true