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apache / incubator-taverna-language / HEAD
  1. b721c15 Update cxf-xjc-plugin to avoid bug of xsd binding not being picked up by Stian Soiland-Reyes · 4 years, 8 months ago apache-retire-2020-03-12
  2. f872646 http -> https by Stian Soiland-Reyes · 5 years ago
  3. c5c5bfb shrink test dependencies, use jdom2 if needed by Stian Soiland-Reyes · 5 years ago
  4. 32564ac use jdom2 servicemix bundle by Stian Soiland-Reyes · 5 years ago
  5. 1a3eaaf correct oa namespace by Stian Soiland-Reyes · 5 years ago
  6. ac330a9 Merge branch 'master' into no-ontologies by Stian Soiland-Reyes · 5 years ago
  7. 7f32f6e Merge branch 'master' of github.com:apache/incubator-taverna-language by Stian Soiland-Reyes · 5 years ago
  8. 24346f5 TAVERNA-1060 Newer maven parent (thus appassembler) by Stian Soiland-Reyes · 5 years ago
  9. ab4488e GitBox in scm by Stian Soiland-Reyes · 5 years ago
  10. c7b1638 text/plain fun by Stian Soiland-Reyes · 5 years ago
  11. cf54132 xml typo by Stian Soiland-Reyes · 5 years ago
  12. 93f45f0 also avoid XMLSchema.dtd by Stian Soiland-Reyes · 5 years ago
  13. 0d01d92 more Prov -> prov by Stian Soiland-Reyes · 5 years ago
  14. 97739d6 Use new taverna-ro-vocabs constants by Stian Soiland-Reyes · 5 years ago
  15. 1ad20c1 lowercase vocabulary prefix name by Stian Soiland-Reyes · 5 years ago
  16. c6175ca Relative path for ./xmldsig-core-schema.xsd by Stian Soiland-Reyes · 5 years ago
  17. 74718a7 Reference/include w3c licenses by Stian Soiland-Reyes · 5 years ago
  18. 9bd8687 Updated w3c licenses and reference local copy by Stian Soiland-Reyes · 5 years ago
  19. 0ba3ddf Avoid roevo CC-BY license by Stian Soiland-Reyes · 5 years ago
  20. 936293f w3c licenses by Stian Soiland-Reyes · 5 years ago
  21. 329cef4 Updated xenc-schema.xsd now Software License header by Stian Soiland-Reyes · 5 years ago
  22. 4ebeadc Shrink LICENSE as ontologies are no longer included by Stian Soiland-Reyes · 5 years ago
  23. d510013 Hand-coded vocabularies instead of including ontologies by Stian Soiland-Reyes · 5 years ago
  24. 58a7618 Add PROV-AQ terms by Stian Soiland-Reyes · 5 years ago
  25. b34dd57 Moved vocularies to taverna-ro-vocabs by Stian Soiland-Reyes · 5 years ago
  26. 68ad29a add taverna-scufl2-ro-vocabs module by Stian Soiland-Reyes · 5 years ago
  27. 43b4518 Vocabulary definitions for RO by Stian Soiland-Reyes · 5 years ago
  28. 4c02e5a Removed javadoc from original vocabularies by Stian Soiland-Reyes · 5 years ago
  29. f31ee18 Apache license by Stian Soiland-Reyes · 5 years ago
  30. 110c351 Simplify NOTICE to avoid CC-BY confusion by Stian Soiland-Reyes · 5 years ago
  31. 5778e6f attributions moved to NOTICE by Stian Soiland-Reyes · 5 years ago
  32. 98dcf2b Moved CC-BY to NOTICE as it is just attribution by Stian Soiland-Reyes · 5 years ago
  33. f88ea04 Adding generated-code under Apache License by Stian Soiland-Reyes · 5 years ago
  34. af88d33 Merge branch 'cwlparser' by Stian Soiland-Reyes · 6 years ago
  35. 991224b Parse step outputs and support DataLink CWL to Taverna conversion by Stian Soiland-Reyes · 6 years ago
  36. bebd694 Create a Taverna to Custom CWL Objects converter by Majdi Haouech · 6 years ago
  37. 9d34b4a Add name attribute to all Processes by Majdi Haouech · 6 years ago
  38. f089bd8 Use explicit imports instead of wildcards. Add minor test change. by Majdi Haouech · 6 years ago
  39. fb5c41a Add method to create nested workflow by Stian Soiland-Reyes · 6 years ago
  40. 2c17fa7 Add support for datalinks while converting a Workflow by Majdi Haouech · 6 years ago
  41. 0ca7ac2 Check that nested process has the same i/o ports as the child workflow by Majdi Haouech · 6 years ago
  42. d163547 Create a mirror process for each new nested workflow by Majdi Haouech · 6 years ago
  43. 06de630 Parse step outputs from the yaml file by Majdi Haouech · 6 years ago
  44. 50b2cae Change components package and clean unused imports throught the project by Majdi Haouech · 6 years ago
  45. 2530da3 Improve testing the nested workflow tool by Majdi Haouech · 6 years ago
  46. 3efbf08 Change nesting method name, Add a test by Majdi Haouech · 6 years ago
  47. 9cd4b87 Support nested workflows by parsing processes recursively by Stian Soiland-Reyes · 6 years ago
  48. b8081fa Convert ports inside steps while converting parent processes by Majdi Haouech · 6 years ago
  49. ba5ea1b Create input/output port adapted to all step types (workflow or other) by Majdi Haouech · 6 years ago
  50. 38d1fad Add basic cwl WorkflowBundleReader by Majdi Haouech · 6 years ago
  51. d93452d Add test for nested helper in Scufl2Tools by Majdi Haouech · 6 years ago
  52. e0ec556 Convert WorkflowProcess to WorkflowBundle with nested processes by Majdi Haouech · 6 years ago
  53. 8aa7422 Clean up and add tests for the nested workflows by Majdi Haouech · 6 years ago
  54. 5557bc6 Delete useless main class by Majdi Haouech · 6 years ago
  55. e27be56 Revert "Parse workflows and command line tools recursively" by Majdi Haouech · 6 years ago
  56. edb12c6 API: Add a tool to nest a workflow in a process by Majdi Haouech · 6 years ago
  57. a4e79d4 Fix conflicts and merge branch 'cwlparser' into cwl by Majdi Haouech · 6 years ago
  58. b56f451 Parse workflows and command line tools recursively by Majdi Haouech · 6 years ago
  59. a5251d1 remove empty file by Stian Soiland-Reyes · 6 years ago
  60. afcfd77 add taverna-scufl2-cwl to build by Stian Soiland-Reyes · 6 years ago
  61. 88c14c4 Merge branch 'haouech:convert' into cwlparser by Stian Soiland-Reyes · 6 years ago
  62. 87fa1c1 Move test-like functions to test folder by Majdi Haouech · 6 years ago
  63. 6d2da02 Initialize simple objects outside of constructor by Majdi Haouech · 6 years ago
  64. 70c9d4a Parse workflows and command line tools recursively by Majdi Haouech · 6 years ago
  65. 48f7dd9 Merge branch haouech:cwlparser (#38) into cwlparser by Stian Soiland-Reyes · 6 years ago
  66. d39a8a2 Fix test equality for ports and add Apache header by Majdi Haouech · 6 years ago
  67. 289583c Fix wild card imports by Majdi Haouech · 6 years ago
  68. 62c3615 Add parser tests by Majdi Haouech · 6 years ago
  69. 4ee2f5b Add main parser that parses the structure of a CWL workflow by Majdi Haouech · 6 years ago
  70. 881a409 Split CWL parser and converter by Majdi Haouech · 6 years ago
  71. ee6b282 Add dummy test and workflow example by Majdi Haouech · 6 years ago
  72. ba29413 Add jackson and snackyaml dependencies by Majdi Haouech · 6 years ago
  73. 6d6dc20 Add CWL Parser, import helper from common activities by Majdi Haouech · 6 years ago
  74. ecc3b67 Add CWL components by Majdi Haouech · 6 years ago
  75. 4d32489 Parse inputs, add tests by Majdi Haouech · 6 years ago
  76. 252e3d8 Add helper functions by Majdi Haouech · 6 years ago
  77. 3091092 First commit, Add YAML file parser by Majdi Haouech · 6 years ago
  78. e5547ef Just regular Apache License inside example.wfbundle by Stian Soiland-Reyes · 6 years ago
  79. 4ea6894 [maven-release-plugin] prepare for next development iteration by Stian Soiland-Reyes · 6 years ago
  80. c48ef9d [maven-release-plugin] prepare release 0.16.0-incubating-RC1 by Stian Soiland-Reyes · 6 years ago
  81. 2251970 TAVERNA-925: New schema makes JAXBElement<Manifest> by Stian Soiland-Reyes · 6 years ago
  82. fb05e13 TAVERNA-925: Required attributes by Stian Soiland-Reyes · 6 years ago
  83. 0666c60 TAVERNA-925: OASIS licensed OpenDocument-v1.2-os-manifest-schema.rng by Stian Soiland-Reyes · 6 years ago
  84. 8fb8e77 Alternative to OpenDocument-v1.2-os-manifest-schema.xsd by Stian Soiland-Reyes · 6 years ago
  85. 4da3809 README update - require Java 8/9 by Stian Soiland-Reyes · 6 years ago
  86. 4c0dd0e Use Jena 3.7.0 (except for jena-maven-tools) by Stian Soiland-Reyes · 6 years ago
  87. 4ffc37c Avoid some System.out by Stian Soiland-Reyes · 6 years ago
  88. b761bfd Formatting: somewhat harmonized pom.xml indenting by Stian Soiland-Reyes · 6 years ago
  89. f352094 Reformatting: tab -> spaces by Stian Soiland-Reyes · 6 years ago
  90. e50826e TAVERNA-1048: Look up annotations by Path/URI by Stian Soiland-Reyes · 6 years ago
  91. 3336e75 TAVERNA-1047: Ensure annotations have /.ro/ relative URIs by Stian Soiland-Reyes · 6 years ago
  92. 71708bc Complete test parsing of example manifest.json by Stian Soiland-Reyes · 6 years ago
  93. aaf3f2b parse bundledAs and folder info by Stian Soiland-Reyes · 6 years ago
  94. b5dd34a Newer bundle ontology 0.2.0-SNAPSHOT by Stian Soiland-Reyes · 6 years ago
  95. 76fc46f Avoid deprecated setProxy() method by Stian Soiland-Reyes · 6 years ago
  96. 2cb004d Can't expect to parse annotations with no "content" by Stian Soiland-Reyes · 6 years ago
  97. ea43200 TAVERNA-1046: Pick up ORCID from manifest by Stian Soiland-Reyes · 6 years ago
  98. 3c9d0a9 Test bag-of-bags-manifest.json by Stian Soiland-Reyes · 6 years ago
  99. ad352d1 Rewrote example in my own words by Stian Soiland-Reyes · 6 years ago
  100. eeb6704 bag-of-bags manifest by Stian Soiland-Reyes · 6 years ago