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apache
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incubator-taverna-language
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HEAD
1a823c5
https for archive.apache.org
by Stian Soiland-Reyes
· 4 years, 2 months ago
master
3d3a705
Taverna retired from Apache Incubator
by Stian Soiland-Reyes
· 4 years, 2 months ago
b721c15
Update cxf-xjc-plugin to avoid bug of xsd binding not being picked up
by Stian Soiland-Reyes
· 4 years, 8 months ago
apache-retire-2020-03-12
f872646
http -> https
by Stian Soiland-Reyes
· 5 years ago
c5c5bfb
shrink test dependencies, use jdom2 if needed
by Stian Soiland-Reyes
· 5 years ago
32564ac
use jdom2 servicemix bundle
by Stian Soiland-Reyes
· 5 years ago
1a3eaaf
correct oa namespace
by Stian Soiland-Reyes
· 5 years ago
ac330a9
Merge branch 'master' into no-ontologies
by Stian Soiland-Reyes
· 5 years ago
7f32f6e
Merge branch 'master' of github.com:apache/incubator-taverna-language
by Stian Soiland-Reyes
· 5 years ago
24346f5
TAVERNA-1060 Newer maven parent (thus appassembler)
by Stian Soiland-Reyes
· 5 years ago
ab4488e
GitBox in scm
by Stian Soiland-Reyes
· 5 years ago
c7b1638
text/plain fun
by Stian Soiland-Reyes
· 5 years ago
cf54132
xml typo
by Stian Soiland-Reyes
· 5 years ago
93f45f0
also avoid XMLSchema.dtd
by Stian Soiland-Reyes
· 5 years ago
0d01d92
more Prov -> prov
by Stian Soiland-Reyes
· 5 years ago
97739d6
Use new taverna-ro-vocabs constants
by Stian Soiland-Reyes
· 5 years ago
1ad20c1
lowercase vocabulary prefix name
by Stian Soiland-Reyes
· 5 years ago
c6175ca
Relative path for ./xmldsig-core-schema.xsd
by Stian Soiland-Reyes
· 5 years ago
74718a7
Reference/include w3c licenses
by Stian Soiland-Reyes
· 5 years ago
9bd8687
Updated w3c licenses and reference local copy
by Stian Soiland-Reyes
· 5 years ago
0ba3ddf
Avoid roevo CC-BY license
by Stian Soiland-Reyes
· 5 years ago
936293f
w3c licenses
by Stian Soiland-Reyes
· 5 years ago
329cef4
Updated xenc-schema.xsd now Software License header
by Stian Soiland-Reyes
· 5 years ago
4ebeadc
Shrink LICENSE as ontologies are no longer included
by Stian Soiland-Reyes
· 5 years ago
d510013
Hand-coded vocabularies instead of including ontologies
by Stian Soiland-Reyes
· 5 years ago
58a7618
Add PROV-AQ terms
by Stian Soiland-Reyes
· 5 years ago
b34dd57
Moved vocularies to taverna-ro-vocabs
by Stian Soiland-Reyes
· 5 years ago
68ad29a
add taverna-scufl2-ro-vocabs module
by Stian Soiland-Reyes
· 5 years ago
43b4518
Vocabulary definitions for RO
by Stian Soiland-Reyes
· 5 years ago
4c02e5a
Removed javadoc from original vocabularies
by Stian Soiland-Reyes
· 5 years ago
f31ee18
Apache license
by Stian Soiland-Reyes
· 5 years ago
110c351
Simplify NOTICE to avoid CC-BY confusion
by Stian Soiland-Reyes
· 5 years ago
5778e6f
attributions moved to NOTICE
by Stian Soiland-Reyes
· 5 years ago
98dcf2b
Moved CC-BY to NOTICE as it is just attribution
by Stian Soiland-Reyes
· 5 years ago
f88ea04
Adding generated-code under Apache License
by Stian Soiland-Reyes
· 5 years ago
af88d33
Merge branch 'cwlparser'
by Stian Soiland-Reyes
· 6 years ago
991224b
Parse step outputs and support DataLink CWL to Taverna conversion
by Stian Soiland-Reyes
· 6 years ago
bebd694
Create a Taverna to Custom CWL Objects converter
by Majdi Haouech
· 6 years ago
9d34b4a
Add name attribute to all Processes
by Majdi Haouech
· 6 years ago
f089bd8
Use explicit imports instead of wildcards. Add minor test change.
by Majdi Haouech
· 6 years ago
fb5c41a
Add method to create nested workflow
by Stian Soiland-Reyes
· 6 years ago
2c17fa7
Add support for datalinks while converting a Workflow
by Majdi Haouech
· 6 years ago
0ca7ac2
Check that nested process has the same i/o ports as the child workflow
by Majdi Haouech
· 6 years ago
d163547
Create a mirror process for each new nested workflow
by Majdi Haouech
· 6 years ago
06de630
Parse step outputs from the yaml file
by Majdi Haouech
· 6 years ago
50b2cae
Change components package and clean unused imports throught the project
by Majdi Haouech
· 6 years ago
2530da3
Improve testing the nested workflow tool
by Majdi Haouech
· 6 years ago
3efbf08
Change nesting method name, Add a test
by Majdi Haouech
· 6 years ago
9cd4b87
Support nested workflows by parsing processes recursively
by Stian Soiland-Reyes
· 6 years ago
b8081fa
Convert ports inside steps while converting parent processes
by Majdi Haouech
· 6 years ago
ba5ea1b
Create input/output port adapted to all step types (workflow or other)
by Majdi Haouech
· 6 years ago
38d1fad
Add basic cwl WorkflowBundleReader
by Majdi Haouech
· 6 years ago
d93452d
Add test for nested helper in Scufl2Tools
by Majdi Haouech
· 6 years ago
e0ec556
Convert WorkflowProcess to WorkflowBundle with nested processes
by Majdi Haouech
· 6 years ago
8aa7422
Clean up and add tests for the nested workflows
by Majdi Haouech
· 6 years ago
5557bc6
Delete useless main class
by Majdi Haouech
· 6 years ago
e27be56
Revert "Parse workflows and command line tools recursively"
by Majdi Haouech
· 6 years ago
edb12c6
API: Add a tool to nest a workflow in a process
by Majdi Haouech
· 6 years ago
a4e79d4
Fix conflicts and merge branch 'cwlparser' into cwl
by Majdi Haouech
· 6 years ago
b56f451
Parse workflows and command line tools recursively
by Majdi Haouech
· 6 years ago
a5251d1
remove empty file
by Stian Soiland-Reyes
· 6 years ago
afcfd77
add taverna-scufl2-cwl to build
by Stian Soiland-Reyes
· 6 years ago
88c14c4
Merge branch 'haouech:convert' into cwlparser
by Stian Soiland-Reyes
· 6 years ago
87fa1c1
Move test-like functions to test folder
by Majdi Haouech
· 6 years ago
6d2da02
Initialize simple objects outside of constructor
by Majdi Haouech
· 6 years ago
70c9d4a
Parse workflows and command line tools recursively
by Majdi Haouech
· 6 years ago
48f7dd9
Merge branch haouech:cwlparser (#38) into cwlparser
by Stian Soiland-Reyes
· 6 years ago
d39a8a2
Fix test equality for ports and add Apache header
by Majdi Haouech
· 6 years ago
289583c
Fix wild card imports
by Majdi Haouech
· 6 years ago
62c3615
Add parser tests
by Majdi Haouech
· 6 years ago
4ee2f5b
Add main parser that parses the structure of a CWL workflow
by Majdi Haouech
· 6 years ago
881a409
Split CWL parser and converter
by Majdi Haouech
· 6 years ago
ee6b282
Add dummy test and workflow example
by Majdi Haouech
· 6 years ago
ba29413
Add jackson and snackyaml dependencies
by Majdi Haouech
· 6 years ago
6d6dc20
Add CWL Parser, import helper from common activities
by Majdi Haouech
· 6 years ago
ecc3b67
Add CWL components
by Majdi Haouech
· 6 years ago
4d32489
Parse inputs, add tests
by Majdi Haouech
· 6 years ago
252e3d8
Add helper functions
by Majdi Haouech
· 6 years ago
3091092
First commit, Add YAML file parser
by Majdi Haouech
· 6 years ago
e5547ef
Just regular Apache License inside example.wfbundle
by Stian Soiland-Reyes
· 6 years ago
4ea6894
[maven-release-plugin] prepare for next development iteration
by Stian Soiland-Reyes
· 6 years ago
c48ef9d
[maven-release-plugin] prepare release 0.16.0-incubating-RC1
by Stian Soiland-Reyes
· 6 years ago
2251970
TAVERNA-925: New schema makes JAXBElement<Manifest>
by Stian Soiland-Reyes
· 6 years ago
fb05e13
TAVERNA-925: Required attributes
by Stian Soiland-Reyes
· 6 years ago
0666c60
TAVERNA-925: OASIS licensed OpenDocument-v1.2-os-manifest-schema.rng
by Stian Soiland-Reyes
· 6 years ago
8fb8e77
Alternative to OpenDocument-v1.2-os-manifest-schema.xsd
by Stian Soiland-Reyes
· 6 years ago
4da3809
README update - require Java 8/9
by Stian Soiland-Reyes
· 6 years ago
4c0dd0e
Use Jena 3.7.0 (except for jena-maven-tools)
by Stian Soiland-Reyes
· 6 years ago
4ffc37c
Avoid some System.out
by Stian Soiland-Reyes
· 6 years ago
b761bfd
Formatting: somewhat harmonized pom.xml indenting
by Stian Soiland-Reyes
· 6 years ago
f352094
Reformatting: tab -> spaces
by Stian Soiland-Reyes
· 6 years ago
e50826e
TAVERNA-1048: Look up annotations by Path/URI
by Stian Soiland-Reyes
· 6 years ago
3336e75
TAVERNA-1047: Ensure annotations have /.ro/ relative URIs
by Stian Soiland-Reyes
· 6 years ago
71708bc
Complete test parsing of example manifest.json
by Stian Soiland-Reyes
· 6 years ago
aaf3f2b
parse bundledAs and folder info
by Stian Soiland-Reyes
· 6 years ago
b5dd34a
Newer bundle ontology 0.2.0-SNAPSHOT
by Stian Soiland-Reyes
· 6 years ago
76fc46f
Avoid deprecated setProxy() method
by Stian Soiland-Reyes
· 6 years ago
2cb004d
Can't expect to parse annotations with no "content"
by Stian Soiland-Reyes
· 6 years ago
ea43200
TAVERNA-1046: Pick up ORCID from manifest
by Stian Soiland-Reyes
· 6 years ago
3c9d0a9
Test bag-of-bags-manifest.json
by Stian Soiland-Reyes
· 6 years ago
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