pom.xml

<?xml version="1.0"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
    <modelVersion>4.0.0</modelVersion>
    <groupId>org.purl.wf4ever</groupId>
    <artifactId>scufl2-wfdesc</artifactId>
    <version>0.3.3</version>
    <packaging>bundle</packaging>    
    <name>SCUFL2 to wfdesc</name>
    <description>Convert Scufl2 workflow to wfdesc structure (from Wf4Ever RO ontology)</description>
    <properties>
        <scufl2.version>0.13.1</scufl2.version>
        <elmo.version>1.5</elmo.version>
        <sesame.version>2.2.4</sesame.version>
        <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
        <project.reporting.outputEncoding>UTF-8</project.reporting.outputEncoding>
    </properties>
    <url>https://github.com/wf4ever/scufl2-wfdesc/</url>
	<scm>
		<connection>scm:git:git://github.com/wf4ever/scufl2-wfdesc.git</connection>
		<developerConnection>scm:git:ssh://git@github.com/wf4ever/scufl2-wfdesc.git</developerConnection>
		<url>https://github.com/wf4ever/scufl2-wfdesc/</url>
  </scm>    
    <build>
        <plugins>
            <plugin>
                <groupId>org.apache.felix</groupId>
                <artifactId>maven-bundle-plugin</artifactId>
                <version>2.3.7</version>
                <extensions>true</extensions>
                <!-- NO - this adds them to this JAR which breaks everywhere else! 
                <configuration>
                    <instructions>
                        <Export-Package>uk.org.taverna.scufl2.api.io;provide:=true</Export-Package>
                    </instructions>
                </configuration>
                 -->
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-compiler-plugin</artifactId>
                <version>2.3.2</version>
                <configuration>
                    <source>1.6</source>
                    <target>1.6</target>
                </configuration>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-source-plugin</artifactId>
                <version>2.1.2</version>
                <executions>
                    <execution>
                        <goals>
                            <goal>jar</goal>
                            <goal>test-jar</goal>
                        </goals>
                    </execution>
                </executions>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-jar-plugin</artifactId>
                <version>2.3.1</version>
                <executions>
                    <execution>
                        <goals>
                            <goal>test-jar</goal>
                        </goals>
                    </execution>
                </executions>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-surefire-plugin</artifactId>
                <version>2.7.1</version>
                <configuration>
                    <skip>false</skip>
                    <systemProperties>
                        <property>
                            <name>java.awt.headless</name>
                            <value>true</value>
                        </property>
                    </systemProperties>
                </configuration>
            </plugin>
            <plugin>
                <artifactId>maven-antrun-plugin</artifactId>
                <version>1.6</version>
                <executions>
                    <execution>
                        <phase>generate-sources</phase>
                        <configuration>
                            <target>
                                <property name="compile_classpath" refid="maven.compile.classpath" />
                                <property name="runtime_classpath" refid="maven.runtime.classpath" />
                                <property name="test_classpath" refid="maven.test.classpath" />
                                <property name="plugin_classpath" refid="maven.plugin.classpath" />

                                <!-- inspired by http://openprovenance.org/java/maven-releases/org/openprovenance/opm-elmo/1.1.1/opm-elmo-1.1.1.pom -->

                                <mkdir dir="${project.build.directory}" />
                                <mkdir dir="${project.build.directory}/generated-sources" />
                                <mkdir dir="${project.build.directory}/generated-sources/elmo" />

                                <java classname="org.openrdf.elmo.codegen.OntologyConverter" fork="true" failonerror="true" maxmemory="128m">
                                    <arg value="-b" />
                                    <arg value="org.purl.wf4ever.wfdesc=http://purl.org/wf4ever/wfdesc#" />
                                    <arg value="-b" />
                                    <arg value="org.purl.wf4ever.wf4ever=http://purl.org/wf4ever/wf4ever#" />
                                    <arg value="-b" />
                                    <arg value="org.purl.wf4ever.wfprov=http://purl.org/wf4ever/wfprov#" />
                                    <arg value="-b" />
                                    <arg value="org.w3.prov=http://www.w3.org/ns/prov#" />
                                    <arg value="-b" />
                                    <arg value="org.purl.wf4ever.roterms=http://purl.org/wf4ever/roterms#" />
                                    <arg value="-b" />
                                    <arg value="org.w3.rdfs=http://www.w3.org/2000/01/rdf-schema#" />
                                    
                                        

                                    <!-- <arg value="-p" /> <arg value="wfdesc" /> -->
                                    <arg value="-j" />
                                    <arg value="target/wfdesc-ontology.jar" />

                                    <arg value="-p" />
                                    <arg value="wf" /> <!-- Windows freaks out if this is really empty -->

                                    <!-- <arg value="http://purl.org/wf4ever/wfdesc" /> -->
                                    <arg value="src/main/resources/org/purl/wf4ever/wfdesc/wfdesc.ttl" />
                                    <arg value="src/main/resources/org/purl/wf4ever/wfdesc/wf4ever.ttl" />
                                    <arg value="src/main/resources/com/xmlns/foaf/foaf.rdf" />
                                    <arg value="src/main/resources/org/w3/prov-o.ttl" />

                                        <!-- 
                                         -->
                                    <arg value="src/main/resources/org/purl/wf4ever/wfdesc/roterms.ttl" />


                                    <classpath refid="maven.plugin.classpath" />
                                    <classpath>
                                        <pathelement path="." />
                                    </classpath>
                                    project.name
                                </java>
                                <unzip src="${project.build.directory}/wfdesc-ontology.jar" dest="${project.build.directory}/generated-sources/elmo">
                                    <patternset>
                                        <exclude name="**/*.class" />
                                    </patternset>
                                </unzip>
                            </target>
                        </configuration>
                        <goals>
                            <goal>run</goal>
                        </goals>
                    </execution>
                </executions>
                <dependencies>
                    <dependency>
                        <groupId>org.openrdf.elmo</groupId>
                        <artifactId>elmo-codegen</artifactId>
                        <version>1.5</version>
                    </dependency>
                    <dependency>
                        <groupId>org.slf4j</groupId>
                        <artifactId>slf4j-log4j12</artifactId>
                        <version>1.5.2</version>  <!-- note old version required for elmo! -->
                    </dependency>
                </dependencies>
            </plugin>
            <plugin>
                <groupId>org.codehaus.mojo</groupId>
                <artifactId>build-helper-maven-plugin</artifactId>
                <version>1.5</version>
                <executions>
                    <execution>
                        <id>add-source</id>
                        <phase>generate-sources</phase>
                        <goals>
                            <goal>add-source</goal>
                            <goal>add-resource</goal>
                        </goals>
                        <configuration>
                            <sources>
                                <source>${project.build.directory}/generated-sources/elmo/</source>
                            </sources>
                            <resources>
                                <resource>
                                    <directory>${project.build.directory}/generated-sources/elmo/META-INF</directory>
                                    <targetPath>META-INF</targetPath>
                                </resource>
                            </resources>
                        </configuration>
                    </execution>
                </executions>
            </plugin>
            <plugin>
                <groupId>org.codehaus.mojo</groupId>
                <artifactId>appassembler-maven-plugin</artifactId>
                <version>1.1.1</version>
                <executions>
                    <execution>
                        <id>assemble</id>
                        <phase>package</phase>
                        <goals>
                            <goal>assemble</goal>
                        </goals>
                    </execution>
                </executions>
                <configuration>
                    <assembleDirectory>${project.build.directory}/${project.artifactId}</assembleDirectory>
                    <programs>
                        <program>
                            <mainClass>org.purl.wf4ever.wfdesc.scufl2.ConvertToWfdesc</mainClass>
                            <name>scufl2-to-wfdesc</name>
                        </program>
                    </programs>
                </configuration>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-shade-plugin</artifactId>
                <!--<version>2.0</version> does not work with Maven 2 :( -->
                <version>1.7.1</version>
                <executions>
                    <execution>
                        <phase>package</phase>
                        <goals>
                            <goal>shade</goal>
                        </goals>
                        <configuration>
                            <shadedArtifactAttached>true</shadedArtifactAttached>
                            <shadedClassifierName>standalone</shadedClassifierName>
                            <transformers>
                                <transformer implementation="org.apache.maven.plugins.shade.resource.ManifestResourceTransformer">
                                    <mainClass>org.purl.wf4ever.wfdesc.scufl2.ConvertToWfdesc</mainClass>
                                </transformer>
                                <transformer implementation="org.apache.maven.plugins.shade.resource.ServicesResourceTransformer" />
                                <transformer implementation="org.apache.maven.plugins.shade.resource.XmlAppendingTransformer">
                                    <resource>META-INF/spring</resource>
                                </transformer>
                            </transformers>
                        </configuration>
                    </execution>
                </executions>
            </plugin>
        </plugins>
        <pluginManagement>
            <plugins>
                <!--This plugin's configuration is used to store Eclipse 
                    m2e settings only. It has no influence on the Maven build itself. -->
                <plugin>
                    <groupId>org.eclipse.m2e</groupId>
                    <artifactId>lifecycle-mapping</artifactId>
                    <version>1.0.0</version>
                    <configuration>
                        <lifecycleMappingMetadata>
                            <pluginExecutions>
                                <pluginExecution>
                                    <pluginExecutionFilter>
                                        <groupId>org.apache.maven.plugins</groupId>
                                        <artifactId>maven-antrun-plugin</artifactId>
                                        <versionRange>[1.6,)</versionRange>
                                        <goals>
                                            <goal>run</goal>
                                        </goals>
                                    </pluginExecutionFilter>
                                    <action>
                                        <execute>
                                            <runOnIncremental>false</runOnIncremental>
                                        </execute>
                                    </action>
                                </pluginExecution>
                            </pluginExecutions>
                        </lifecycleMappingMetadata>
                    </configuration>
                </plugin>
            </plugins>
        </pluginManagement>
    </build>
    <dependencies>

        <dependency>
            <groupId>uk.org.taverna.scufl2</groupId>
            <artifactId>scufl2-api</artifactId>
            <version>${scufl2.version}</version>
        </dependency>
        <dependency>
            <groupId>uk.org.taverna.scufl2</groupId>
            <artifactId>scufl2-t2flow</artifactId>
            <version>${scufl2.version}</version>
        </dependency>

        <dependency>
            <groupId>uk.org.taverna.scufl2</groupId>
            <artifactId>scufl2-scufl</artifactId>
            <version>${scufl2.version}</version>
        </dependency>

        <dependency>
            <groupId>uk.org.taverna.scufl2</groupId>
            <artifactId>scufl2-api</artifactId>
            <version>${scufl2.version}</version>
            <type>test-jar</type>
            <scope>test</scope>
        </dependency>

        <dependency>
            <groupId>junit</groupId>
            <artifactId>junit</artifactId>
            <version>4.4</version>
        </dependency>
        <dependency>
            <groupId>commons-beanutils</groupId>
            <artifactId>commons-beanutils</artifactId>
            <version>1.7.0</version>
        </dependency>

        <dependency>
            <groupId>org.openrdf.elmo</groupId>
            <artifactId>elmo-api</artifactId>
            <version>${elmo.version}</version>
        </dependency>

        <dependency>
            <groupId>org.openrdf.elmo</groupId>
            <artifactId>elmo-sesame</artifactId>
            <version>${elmo.version}</version>
            <exclusions>
                <exclusion>
                    <groupId>org.slf4j</groupId>
                    <artifactId>jcl104-over-slf4j</artifactId>
                </exclusion>
            </exclusions>
        </dependency>

        <dependency>
            <groupId>org.slf4j</groupId>
            <artifactId>slf4j-log4j12</artifactId>
            <version>1.4.3</version>
        </dependency>
        <dependency>
            <groupId>org.openrdf.elmo</groupId>
            <artifactId>elmo-dynabean</artifactId>
            <version>${elmo.version}</version>
        </dependency>
        <dependency>
            <groupId>org.openrdf.sesame</groupId>
            <artifactId>sesame-repository-sail</artifactId>
            <version>${sesame.version}</version>
        </dependency>
        <dependency>
            <groupId>org.openrdf.sesame</groupId>
            <artifactId>sesame-sail-memory</artifactId>
            <version>${sesame.version}</version>
        </dependency>
        <dependency>
            <groupId>org.openrdf.elmo</groupId>
            <artifactId>elmo-codegen</artifactId>
            <version>${elmo.version}</version>
        </dependency>
        <dependency>
            <groupId>commons-io</groupId>
            <artifactId>commons-io</artifactId>
            <version>2.1</version>
            <type>jar</type>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.codehaus.jackson</groupId>
            <artifactId>jackson-mapper-asl</artifactId>
            <version>1.9.3</version>
            <type>jar</type>
        </dependency>
        <dependency>
            <groupId>com.sun.jersey</groupId>
            <artifactId>jersey-client</artifactId>
            <version>1.11</version>
            <scope>compile</scope>
        </dependency>
    </dependencies>
    <repositories>
        <repository>
            <releases>
                <enabled>true</enabled>
            </releases>
            <snapshots>
                <enabled>false</enabled>
            </snapshots>
            <id>aduna-opensource.releases</id>
            <name>Aduna Open Source - Maven releases</name>
            <url>http://repo.aduna-software.org/maven2/releases</url>
        </repository>
        <repository>
            <releases>
                <enabled>false</enabled>
            </releases>
            <snapshots>
                <enabled>true</enabled>
            </snapshots>
            <id>aduna-opensource.snapshots</id>
            <name>Aduna Open Source - Maven snapshots</name>
            <url>http://repo.aduna-software.org/maven2/snapshots</url>
        </repository>
        <repository>
            <releases />
            <snapshots>
                <enabled>false</enabled>
            </snapshots>
            <id>mygrid-repository</id>
            <name>myGrid Repository</name>
            <url>http://www.mygrid.org.uk/maven/repository</url>
        </repository>
        <repository>
            <releases>
                <enabled>false</enabled>
            </releases>
            <snapshots />
            <id>mygrid-snapshot-repository</id>
            <name>myGrid Snapshot Repository</name>
            <url>http://www.mygrid.org.uk/maven/snapshot-repository</url>
        </repository>
    </repositories>
    <pluginRepositories>
        <pluginRepository>
            <releases>
                <enabled>true</enabled>
            </releases>
            <snapshots>
                <enabled>false</enabled>
            </snapshots>
            <id>aduna-opensource.releases</id>
            <name>Aduna Open Source - Maven releases</name>
            <url>http://repo.aduna-software.org/maven2/releases</url>
        </pluginRepository>
    </pluginRepositories>
</project>