pom.xml - incubator-taverna-commandline - Git at Google

 <?xml version="1.0" encoding="UTF-8"?>
 <project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
 	xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
 	<modelVersion>4.0.0</modelVersion>
 	<parent>
 		<groupId>net.sf.taverna</groupId>
 		<artifactId>taverna-parent</artifactId>
 		<version>3.0.1-SNAPSHOT</version>
 	</parent>
 	<groupId>uk.org.taverna.workbench</groupId>
 	<artifactId>taverna-command-line-product</artifactId>
 	<name>Taverna Command Line</name>
 	<packaging>taverna-application</packaging>
 	<profiles>
 		<profile>
 			<id>developer</id>
 			<activation>
 				<activeByDefault>true</activeByDefault>
 			</activation>
 			<properties>
 				<assembly.descriptor>src/main/assembly/developer-assembly.xml</assembly.descriptor>
 				<profile.updateSite>http://dev.mygrid.org.uk/taverna/updates/taverna-command-line/</profile.updateSite>
 				<profile.pluginSite>http://dev.mygrid.org.uk/taverna/plugins/taverna-command-line/</profile.pluginSite>
 			</properties>
 		</profile>
 		<profile>
 			<id>nightly</id>
 			<properties>
 				<assembly.descriptor>src/main/assembly/nightly-assembly.xml</assembly.descriptor>
 				<profile.updateSite>http://dev.mygrid.org.uk/taverna/updates/taverna-command-line/</profile.updateSite>
 				<profile.pluginSite>http://dev.mygrid.org.uk/taverna/plugins/taverna-command-line/</profile.pluginSite>
 			</properties>
 		</profile>
 		<profile>
 			<id>release</id>
 			<properties>
 				<assembly.descriptor>src/main/assembly/release-assembly.xml</assembly.descriptor>
 				<profile.updateSite>http://www.mygrid.org.uk/taverna/updates/taverna-command-line/</profile.updateSite>
 				<profile.pluginSite>http://www.mygrid.org.uk/taverna/plugins/taverna-command-line/</profile.pluginSite>
 			</properties>
 		</profile>
 	</profiles>
 	<build>
 		<finalName>taverna-command-line-${project.version}</finalName>
 		<plugins>
 			<plugin>
 				<artifactId>maven-assembly-plugin</artifactId>
 				<version>2.4</version>
 				<executions>
 					<execution>
 						<phase>package</phase>
 						<goals>
 							<goal>single</goal>
 						</goals>
 					</execution>
 				</executions>
 				<configuration>
 					<descriptors>
 						<descriptor>${assembly.descriptor}</descriptor>
 					</descriptors>
 					<archiverConfig>
 						<directoryMode>493</directoryMode> <!-- 493(dec) = 755(oct) -->
 						<defaultDirectoryMode>493</defaultDirectoryMode>
 					</archiverConfig>
 				</configuration>
 			</plugin>
 			<plugin>
 				<groupId>org.codehaus.mojo</groupId>
 				<artifactId>buildnumber-maven-plugin</artifactId>
 				<version>1.0-beta-3</version>
 				<executions>
 					<execution>
 						<id>buildnumber-validate</id>
 						<phase>validate</phase>
 						<goals>
 							<goal>create</goal>
 						</goals>
 					</execution>
 				</executions>
 				<configuration>
 					<format>{0,date,yyyyMMdd}T{0,date,HHmm}</format>
 					<items>
 						<item>timestamp</item>
 					</items>
 				</configuration>
 			</plugin>
 			<plugin>
 				<groupId>net.sf.taverna.t2.maven.plugins</groupId>
 				<artifactId>taverna-maven-plugin</artifactId>
 				<version>0.3.1-SNAPSHOT</version>
 				<extensions>true</extensions>
 				<configuration>
 					<buildNumber>${buildNumber}</buildNumber>
 					<updateSite>${profile.updateSite}</updateSite>
 					<pluginSite>${profile.pluginSite}</pluginSite>
 					<frameworkConfigurations>
 						<frameworkConfiguration>
 							<name>org.osgi.framework.bootdelegation</name>
 							<value>sun.*,com.sun.*,java.*,javax.*,org.xml.*,org.w3c.*,apple.*,com.apple.*,org.omg.*,org.ietf.jgss.*,org.jcp.xml.dsig.internal.*</value>
 						</frameworkConfiguration>
 						<frameworkConfiguration>
 							<name>org.osgi.framework.system.packages.extra</name>
 							<value>com.sun.org.apache.xml.internal.utils,org.apache.log4j;version=1.2.16,net.sf.taverna.t2.commandline.options;version=2.0.1</value>
 						</frameworkConfiguration>
 						<frameworkConfiguration>
 							<name>org.osgi.framework.storage.clean</name>
 							<value>onFirstInit</value>
 						</frameworkConfiguration>
 					</frameworkConfigurations>
 				</configuration>
 			</plugin>
 		</plugins>
 		<pluginManagement>
 			<plugins>
 				<!--This plugin's configuration is used to store Eclipse m2e settings
 					only. It has no influence on the Maven build itself. -->
 				<plugin>
 					<groupId>org.eclipse.m2e</groupId>
 					<artifactId>lifecycle-mapping</artifactId>
 					<version>1.0.0</version>
 					<configuration>
 						<lifecycleMappingMetadata>
 							<pluginExecutions>
 								<pluginExecution>
 									<pluginExecutionFilter>
 										<groupId>
 											net.sf.taverna.t2.maven.plugins
 										</groupId>
 										<artifactId>
 											taverna-maven-plugin
 										</artifactId>
 										<versionRange>
 											[0.3.1-SNAPSHOT,)
 										</versionRange>
 										<goals>
 											<goal>
 												profile-generate
 											</goal>
 										</goals>
 									</pluginExecutionFilter>
 									<action>
 										<execute>
 											<runOnIncremental>false</runOnIncremental>
 										</execute>
 									</action>
 								</pluginExecution>
 							</pluginExecutions>
 						</lifecycleMappingMetadata>
 					</configuration>
 				</plugin>
 			</plugins>
 		</pluginManagement>
 	</build>

 	<dependencies>

 		<!-- Explicit org.osgi.* with <scope>provided as these are also provided
 			by the felix osgi package. Avoids: Caused by: java.lang.SecurityException:
 			class "org.osgi.framework.hooks.bundle.CollisionHook"'s signer information
 			does not match signer information of other classes in the same package -->

 		<dependency>
 			<groupId>org.osgi</groupId>
 			<artifactId>org.osgi.core</artifactId>
 			<version>${osgi.core.version}</version>
 			<scope>provided</scope>
 		</dependency>
 		<dependency>
 			<groupId>org.osgi</groupId>
 			<artifactId>org.osgi.compendium</artifactId>
 			<version>${osgi.core.version}</version>
 			<scope>provided</scope>
 		</dependency>

                 <!-- Invalid manifest header Import-Package: "com.sun.jdmk.comm;resolution:="optional"" : Cannot import a package more than once "com.sun.jdmk.comm"-->
 		<dependency>
 			<groupId>log4j</groupId>
 			<artifactId>log4j</artifactId>
 			<version>${log4j.version}</version>
 			<scope>provided</scope>
 		</dependency>

 		<!-- Spring DM -->
 		<dependency>
 			<groupId>net.sourceforge.cglib</groupId>
 			<artifactId>com.springsource.net.sf.cglib</artifactId>
 			<version>${cglib.version}</version>
 		</dependency>
 		<dependency>
 			<groupId>org.springframework.osgi</groupId>
 			<artifactId>spring-osgi-annotation</artifactId>
 			<version>${spring.dm.version}</version>
 		</dependency>
 		<dependency>
 			<groupId>org.springframework.osgi</groupId>
 			<artifactId>spring-osgi-extender</artifactId>
 			<version>${spring.dm.version}</version>
 		</dependency>
 		<!-- Spring -->
 		<dependency>
 			<groupId>org.springframework</groupId>
 			<artifactId>org.springframework.context</artifactId>
 			<version>${spring.version}</version>
 		</dependency>

 		<!-- Java Extension Implementations -->
 		<!-- Appears unrequired dependency>
 			<groupId>javax.xml.bind</groupId>
 			<artifactId>com.springsource.javax.xml.bind</artifactId>
 			<version>2.2.0</version>
 		</dependency-->
 		<dependency>
 			<groupId>javax.activation</groupId>
 			<artifactId>com.springsource.javax.activation</artifactId>
 			<version>${activation.version}</version>
 		</dependency>
                 <!-- The bundle "com.springsource.bsh_2.0.0.b4 " could not be resolved. Reason: Missing Constraint: Import-Package: javax.servlet; version="[2.5.0,3.0.0)" -->
 		<dependency>
  			<groupId>javax.servlet</groupId>
 			<artifactId>com.springsource.javax.servlet</artifactId>
 			<version>2.5.0</version>
 		</dependency>
                 <!-- The bundle "com.springsource.org.apache.axis_1.4.0 " could not be resolved. Reason: Missing Constraint: Import-Package: javax.jms; version="[1.1.0,2.0.0)" -->
 		<dependency>
 			<groupId>javax.jms</groupId>
 			<artifactId>com.springsource.javax.jms</artifactId>
 			<version>1.1.0</version>
 		</dependency>
                 <!-- The bundle "com.springsource.javax.xml.rpc_1.1.0 " could not be resolved. Reason: Missing Constraint: Import-Package: javax.xml.soap; version="[1.3.0,2.0.0)" -->
 		<dependency>
 			<groupId>javax.xml.soap</groupId>
 			<artifactId>com.springsource.javax.xml.soap</artifactId>
 			<version>1.3.0</version>
 		</dependency>
                 <!-- The bundle "com.springsource.com.thoughtworks.xstream_1.4.1" could not be resolved. Reason: Missing Constraint: Import-Package: javax.xml.stream; version="[1.0.1,2.0.0)" -->
 		<dependency>
 			<groupId>javax.xml.stream</groupId>
 			<artifactId>com.springsource.javax.xml.stream</artifactId>
 			<version>1.0.1</version>
 		</dependency>
 		<dependency>
 			<groupId>javax.mail</groupId>
 			<artifactId>com.springsource.javax.mail</artifactId>
 			<version>${mail.version}</version>
 		</dependency>
 		<dependency>
 			<groupId>commons-codec</groupId>
 			<artifactId>commons-codec</artifactId>
 			<version>${commons.codec.version}</version>
 		</dependency>
   <dependency>
     <groupId>commons-configuration</groupId>
     <artifactId>commons-configuration</artifactId>
     <version>1.10</version>
   </dependency>
   <dependency>
       <groupId>com.sun.xml.bind</groupId>
       <artifactId>jaxb-impl</artifactId>
       <version>2.2.11</version>
   </dependency>


 		<!-- OSGi Enterprise Services -->
 		<dependency>
 			<groupId>uk.org.taverna.osgi.services</groupId>
 			<artifactId>xml-parser-service</artifactId>
 			<version>${osgi.services.version}</version>
 		</dependency>
 		<dependency>
 			<groupId>uk.org.taverna.osgi.services</groupId>
 			<artifactId>xml-transformer-service</artifactId>
 			<version>${osgi.services.version}</version>
 		</dependency>
                 <!-- The bundle "uk.org.taverna.commons.taverna-plugin-impl_0.1.0.SNAPSHOT" could not be resolved. Reason: Missing Constraint: Import-Package: org.osgi.service.event; version="[1.3.0,2.0.0)" -->
 		<dependency>
 			<groupId>org.apache.felix</groupId>
 			<artifactId>org.apache.felix.eventadmin</artifactId>
 			<version>1.3.2</version>
 		</dependency>
 		<!-- Appears unrequired dependency>
 			<groupId>org.apache.felix</groupId>
 			<artifactId>org.apache.felix.configadmin</artifactId>
 			<version>1.6.0</version>
 		</dependency-->

 		<!-- Taverna Activities -->
 		<dependency>
 			<groupId>net.sf.taverna.t2.activities</groupId>
 			<artifactId>apiconsumer-activity</artifactId>
 			<version>2.0.1-SNAPSHOT</version>
 		</dependency>
 		<dependency>
 			<groupId>net.sf.taverna.t2.activities</groupId>
 			<artifactId>beanshell-activity</artifactId>
 			<version>2.0.1-SNAPSHOT</version>
 		</dependency>
 		<dependency>
 			<groupId>net.sf.taverna.t2.activities</groupId>
 			<artifactId>biomart-activity</artifactId>
 			<version>2.0.1-SNAPSHOT</version>
 		</dependency>
 		<dependency>
 			<groupId>net.sf.taverna.t2.activities</groupId>
 			<artifactId>dataflow-activity</artifactId>
 			<version>2.0.1-SNAPSHOT</version>
 		</dependency>
 		<!-- <dependency> <groupId>net.sf.taverna.t2.activities</groupId> <artifactId>external-tool-activity</artifactId>
 			<version>2.0.1-SNAPSHOT</version> </dependency> -->
 		<dependency>
 			<groupId>net.sf.taverna.t2.activities</groupId>
 			<artifactId>localworker-activity</artifactId>
 			<version>2.0.1-SNAPSHOT</version>
 		</dependency>
 		<dependency>
 			<groupId>net.sf.taverna.t2.activities</groupId>
 			<artifactId>rest-activity</artifactId>
 			<version>2.0.1-SNAPSHOT</version>
 		</dependency>
 		<dependency>
 			<groupId>net.sf.taverna.t2.activities</groupId>
 			<artifactId>rshell-activity</artifactId>
 			<version>2.0.1-SNAPSHOT</version>
 		</dependency>
 		<dependency>
 			<groupId>net.sf.taverna.t2.activities</groupId>
 			<artifactId>soaplab-activity</artifactId>
 			<version>2.0.1-SNAPSHOT</version>
 		</dependency>
 		<dependency>
 			<groupId>net.sf.taverna.t2.activities</groupId>
 			<artifactId>spreadsheet-import-activity</artifactId>
 			<version>2.0.1-SNAPSHOT</version>
 		</dependency>
 		<dependency>
 			<groupId>net.sf.taverna.t2.activities</groupId>
 			<artifactId>stringconstant-activity</artifactId>
 			<version>2.0.1-SNAPSHOT</version>
 		</dependency>
 		<dependency>
 			<groupId>net.sf.taverna.t2.activities</groupId>
 			<artifactId>wsdl-activity</artifactId>
 			<version>2.0.1-SNAPSHOT</version>
 		</dependency>
 		<dependency>
 			<groupId>net.sf.taverna.t2.activities</groupId>
 			<artifactId>xpath-activity</artifactId>
 			<version>2.0.1-SNAPSHOT</version>
 		</dependency>

 		<!-- Taverna Commandline -->
 		<dependency>
 			<groupId>net.sf.taverna.t2.taverna-commandline</groupId>
 			<artifactId>taverna-commandline-common</artifactId>
 			<version>${t2.taverna-commandline.version}</version>
 		</dependency>
 		<dependency>
 			<groupId>uk.org.taverna.commandline</groupId>
 			<artifactId>taverna-command-line</artifactId>
 			<version>${taverna-command-line.version}</version>
 		</dependency>

 		<!-- Taverna Platform -->
 		<dependency>
 			<groupId>uk.org.taverna.platform</groupId>
 			<artifactId>taverna-capability-impl</artifactId>
 			<version>${platform.version}</version>
 		</dependency>
 		<dependency>
 			<groupId>uk.org.taverna.platform</groupId>
 			<artifactId>taverna-run-impl</artifactId>
 			<version>${platform.version}</version>
 		</dependency>
 		<dependency>
 			<groupId>uk.org.taverna.platform</groupId>
 			<artifactId>taverna-execution-impl</artifactId>
 			<version>${platform.version}</version>
 		</dependency>
 		<dependency>
 			<groupId>uk.org.taverna.platform</groupId>
 			<artifactId>taverna-execution-local</artifactId>
 			<version>${platform.version}</version>
 		</dependency>

 		<!-- Taverna Commons -->
 		<dependency>
 			<groupId>uk.org.taverna.configuration</groupId>
 			<artifactId>taverna-configuration-impl</artifactId>
 			<version>0.1.1-SNAPSHOT</version>
 		</dependency>
 		<dependency>
 			<groupId>uk.org.taverna.configuration</groupId>
 			<artifactId>taverna-app-configuration-impl</artifactId>
 			<version>0.1.1-SNAPSHOT</version>
 		</dependency>
 		<dependency>
 			<groupId>uk.org.taverna.configuration</groupId>
 			<artifactId>taverna-database-configuration-impl</artifactId>
 			<version>0.1.1-SNAPSHOT</version>
 		</dependency>
 		<dependency>
 			<groupId>uk.org.taverna.commons</groupId>
 			<artifactId>taverna-download-impl</artifactId>
 			<version>0.1.0-SNAPSHOT</version>
 		</dependency>
 		<dependency>
 			<groupId>uk.org.taverna.commons</groupId>
 			<artifactId>taverna-plugin-impl</artifactId>
 			<version>0.1.0-SNAPSHOT</version>
 		</dependency>
 		<dependency>
 			<groupId>uk.org.taverna.commons</groupId>
 			<artifactId>taverna-services-impl</artifactId>
 			<version>0.1.0-SNAPSHOT</version>
 		</dependency>
 		<dependency>
 			<groupId>uk.org.taverna.commons</groupId>
 			<artifactId>taverna-update-impl</artifactId>
 			<version>0.1.0-SNAPSHOT</version>
 		</dependency>

 		<!-- Scufl2 -->
 		<dependency>
 			<groupId>uk.org.taverna.scufl2</groupId>
 			<artifactId>scufl2-rdfxml</artifactId>
 			<version>${scufl2.version}</version>
 		</dependency>
 		<dependency>
 			<groupId>uk.org.taverna.scufl2</groupId>
 			<artifactId>scufl2-t2flow</artifactId>
 			<version>${scufl2.version}</version>
 		</dependency>
 		<dependency>
 			<groupId>uk.org.taverna.scufl2</groupId>
 			<artifactId>scufl2-validation-structural</artifactId>
 			<version>${scufl2.version}</version>
 		</dependency>
 		<dependency>
 			<groupId>uk.org.taverna.scufl2</groupId>
 			<artifactId>scufl2-validation-correctness</artifactId>
 			<version>${scufl2.version}</version>
 		</dependency>

 		<!-- Data bundle -->
 		<dependency>
 			<groupId>uk.org.taverna.databundle</groupId>
 			<artifactId>databundle</artifactId>
 			<version>${taverna.databundle.version}</version>
 		</dependency>
 		<!-- HTTP client needed by Data Bundle -->
 		<!-- Appears unrequired dependency>
 			<groupId>org.apache.httpcomponents</groupId>
 			<artifactId>httpclient-osgi</artifactId>
 			<version>4.2.5</version>
 		</dependency-->
 		<!-- Appears unrequired dependency>
 			<groupId>org.apache.httpcomponents</groupId>
 			<artifactId>httpcore-osgi</artifactId>
 			<version>4.2.5</version>
 		</dependency-->
 		<!-- Jena bundle needed by jsonld-java-jena -->
 		<!-- See https://github.com/stain/jena/tree/jena-bundle/jena-bundle -->
 		<dependency>
 			<groupId>org.apache.jena</groupId>
 			<artifactId>jena-bundle</artifactId>
 			<version>2.12.2-SNAPSHOT</version>
 		</dependency>
 		<!-- slf4j implementation -->
                 <!-- The bundle "org.purl.wf4ever.robundle_0.3.1 " could not be resolved. Reason: Missing Constraint: Import-Package: org.slf4j; version="[1.7.0,2.0.0)"-->
 		<dependency>
 			<groupId>org.slf4j</groupId>
 			<artifactId>slf4j-api</artifactId>
 			<version>1.7.5</version>
 		</dependency>
 		<!-- Appears unrequired  dependency>
 			<groupId>org.slf4j</groupId>
 			<artifactId>slf4j-log4j12</artifactId>
 			<version>1.7.5</version>
 		</dependency-->

 		<!-- Taverna Security -->
 		<dependency>
 			<groupId>net.sf.taverna.t2.security</groupId>
 			<artifactId>credential-manager-impl</artifactId>
 			<version>${t2.security.version}</version>
 		</dependency>

 		<!-- Taverna Workflow Engine -->
 		<dependency>
 			<groupId>net.sf.taverna.t2.core</groupId>
 			<artifactId>workflowmodel-impl</artifactId>
 			<version>${t2.core.version}</version>
 		</dependency>
 		<dependency>
 			<groupId>net.sf.taverna.t2.core</groupId>
 			<artifactId>workflowmodel-core-extensions</artifactId>
 			<version>${t2.core.version}</version>
 		</dependency>
 		<dependency>
 			<groupId>net.sf.taverna.t2.core</groupId>
 			<artifactId>reference-impl</artifactId>
 			<version>${t2.core.version}</version>
 		</dependency>
 		<dependency>
 			<groupId>net.sf.taverna.t2.core</groupId>
 			<artifactId>reference-core-extensions</artifactId>
 			<version>${t2.core.version}</version>
 		</dependency>

 		<!-- Taverna Provenance -->
 		<!--dependency>
 			<groupId>net.sf.taverna.t2.core</groupId>
 			<artifactId>provenance-derby</artifactId>
 			<version>${t2.core.provenance.derby.version}</version>
 		</dependency>
 		<dependency>
 			<groupId>net.sf.taverna.t2.core</groupId>
 			<artifactId>provenance-mysql</artifactId>
 			<version>${t2.core.provenance.mysql.version}</version>
 		</dependency-->
                 <!-- The bundle "org.purl.wf4ever.robundle_0.3.1 " could not be resolved. Reason: Missing Constraint: Import-Package: com.fasterxml.jackson.annotation; version="[2.3.0,3.0.0)"-->
 		<dependency>
                         <groupId>com.fasterxml.jackson.core</groupId>
                         <artifactId>jackson-core</artifactId>
                         <version>2.3.0</version>
                 </dependency>
 		<dependency>
                         <groupId>com.fasterxml.jackson.core</groupId>
                         <artifactId>jackson-annotations</artifactId>
                         <version>2.3.0</version>
                 </dependency>
 		<dependency>
                         <groupId>com.fasterxml.jackson.core</groupId>
                         <artifactId>jackson-databind</artifactId>
                         <version>2.3.0</version>
                 </dependency>
 	</dependencies>

 	<repositories>
 		<repository>
 			<releases />
 			<snapshots>
 				<enabled>false</enabled>
 			</snapshots>
 			<id>mygrid-repository</id>
 			<name>myGrid Repository</name>
 			<url>http://www.mygrid.org.uk/maven/repository</url>
 		</repository>
 		<repository>
 			<releases>
 				<enabled>false</enabled>
 			</releases>
 			<snapshots />
 			<id>mygrid-snapshot-repository</id>
 			<name>myGrid Snapshot Repository</name>
 			<url>http://www.mygrid.org.uk/maven/snapshot-repository</url>
 		</repository>
 		<repository>
 			<id>spring-maven-milestone</id>
 			<name>Springframework Maven Repository</name>
 			<url>http://maven.springframework.org/milestone</url>
 		</repository>
 		<repository>
 			<id>com.springsource.repository.bundles.milestone</id>
 			<name>SpringSource Enterprise Bundle Repository - SpringSource Bundle Milestones</name>
 			<url>http://repository.springsource.com/maven/bundles/milestone</url>
 		</repository>
 		<repository>
 			<id>OPS4J</id>
 			<url>http://repository.ops4j.org/maven2</url>
 		</repository>
 	</repositories>

 	<scm>
 		<connection>scm:svn:http://taverna.googlecode.com/svn/taverna/products/net.sf.taverna.t2.taverna-commandline/trunk/</connection>
 		<developerConnection>scm:svn:https://taverna.googlecode.com/svn/taverna/products/net.sf.taverna.t2.taverna-commandline/trunk/</developerConnection>
 		<url>http://code.google.com/p/taverna/source/browse/#svn/taverna/products/net.sf.taverna.t2.taverna-commandline/trunk/</url>
 	</scm>
 </project>
	<?xml version="1.0" encoding="UTF-8"?>
	<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
	xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
	<modelVersion>4.0.0</modelVersion>
	<parent>
	<groupId>net.sf.taverna</groupId>
	<artifactId>taverna-parent</artifactId>
	<version>3.0.1-SNAPSHOT</version>
	</parent>
	<groupId>uk.org.taverna.workbench</groupId>
	<artifactId>taverna-command-line-product</artifactId>
	<name>Taverna Command Line</name>
	<packaging>taverna-application</packaging>
	<profiles>
	<profile>
	<id>developer</id>
	<activation>
	<activeByDefault>true</activeByDefault>
	</activation>
	<properties>
	<assembly.descriptor>src/main/assembly/developer-assembly.xml</assembly.descriptor>
	<profile.updateSite>http://dev.mygrid.org.uk/taverna/updates/taverna-command-line/</profile.updateSite>
	<profile.pluginSite>http://dev.mygrid.org.uk/taverna/plugins/taverna-command-line/</profile.pluginSite>
	</properties>
	</profile>
	<profile>
	<id>nightly</id>
	<properties>
	<assembly.descriptor>src/main/assembly/nightly-assembly.xml</assembly.descriptor>
	<profile.updateSite>http://dev.mygrid.org.uk/taverna/updates/taverna-command-line/</profile.updateSite>
	<profile.pluginSite>http://dev.mygrid.org.uk/taverna/plugins/taverna-command-line/</profile.pluginSite>
	</properties>
	</profile>
	<profile>
	<id>release</id>
	<properties>
	<assembly.descriptor>src/main/assembly/release-assembly.xml</assembly.descriptor>
	<profile.updateSite>http://www.mygrid.org.uk/taverna/updates/taverna-command-line/</profile.updateSite>
	<profile.pluginSite>http://www.mygrid.org.uk/taverna/plugins/taverna-command-line/</profile.pluginSite>
	</properties>
	</profile>
	</profiles>
	<build>
	<finalName>taverna-command-line-${project.version}</finalName>
	<plugins>
	<plugin>
	<artifactId>maven-assembly-plugin</artifactId>
	<version>2.4</version>
	<executions>
	<execution>
	<phase>package</phase>
	<goals>
	<goal>single</goal>
	</goals>
	</execution>
	</executions>
	<configuration>
	<descriptors>
	<descriptor>${assembly.descriptor}</descriptor>
	</descriptors>
	<archiverConfig>
	<directoryMode>493</directoryMode> <!-- 493(dec) = 755(oct) -->
	<defaultDirectoryMode>493</defaultDirectoryMode>
	</archiverConfig>
	</configuration>
	</plugin>
	<plugin>
	<groupId>org.codehaus.mojo</groupId>
	<artifactId>buildnumber-maven-plugin</artifactId>
	<version>1.0-beta-3</version>
	<executions>
	<execution>
	<id>buildnumber-validate</id>
	<phase>validate</phase>
	<goals>
	<goal>create</goal>
	</goals>
	</execution>
	</executions>
	<configuration>
	<format>{0,date,yyyyMMdd}T{0,date,HHmm}</format>
	<items>
	<item>timestamp</item>
	</items>
	</configuration>
	</plugin>
	<plugin>
	<groupId>net.sf.taverna.t2.maven.plugins</groupId>
	<artifactId>taverna-maven-plugin</artifactId>
	<version>0.3.1-SNAPSHOT</version>
	<extensions>true</extensions>
	<configuration>
	<buildNumber>${buildNumber}</buildNumber>
	<updateSite>${profile.updateSite}</updateSite>
	<pluginSite>${profile.pluginSite}</pluginSite>
	<frameworkConfigurations>
	<frameworkConfiguration>
	<name>org.osgi.framework.bootdelegation</name>
	<value>sun.,com.sun.,java.,javax.,org.xml.,org.w3c.,apple.,com.apple.,org.omg.,org.ietf.jgss.,org.jcp.xml.dsig.internal.*</value>
	</frameworkConfiguration>
	<frameworkConfiguration>
	<name>org.osgi.framework.system.packages.extra</name>
	<value>com.sun.org.apache.xml.internal.utils,org.apache.log4j;version=1.2.16,net.sf.taverna.t2.commandline.options;version=2.0.1</value>
	</frameworkConfiguration>
	<frameworkConfiguration>
	<name>org.osgi.framework.storage.clean</name>
	<value>onFirstInit</value>
	</frameworkConfiguration>
	</frameworkConfigurations>
	</configuration>
	</plugin>
	</plugins>
	<pluginManagement>
	<plugins>
	<!--This plugin's configuration is used to store Eclipse m2e settings
	only. It has no influence on the Maven build itself. -->
	<plugin>
	<groupId>org.eclipse.m2e</groupId>
	<artifactId>lifecycle-mapping</artifactId>
	<version>1.0.0</version>
	<configuration>
	<lifecycleMappingMetadata>
	<pluginExecutions>
	<pluginExecution>
	<pluginExecutionFilter>
	<groupId>
	net.sf.taverna.t2.maven.plugins
	</groupId>
	<artifactId>
	taverna-maven-plugin
	</artifactId>
	<versionRange>
	[0.3.1-SNAPSHOT,)
	</versionRange>
	<goals>
	<goal>
	profile-generate
	</goal>
	</goals>
	</pluginExecutionFilter>
	<action>
	<execute>
	<runOnIncremental>false</runOnIncremental>
	</execute>
	</action>
	</pluginExecution>
	</pluginExecutions>
	</lifecycleMappingMetadata>
	</configuration>
	</plugin>
	</plugins>
	</pluginManagement>
	</build>

	<dependencies>

	<!-- Explicit org.osgi.* with <scope>provided as these are also provided
	by the felix osgi package. Avoids: Caused by: java.lang.SecurityException:
	class "org.osgi.framework.hooks.bundle.CollisionHook"'s signer information
	does not match signer information of other classes in the same package -->

	<dependency>
	<groupId>org.osgi</groupId>
	<artifactId>org.osgi.core</artifactId>
	<version>${osgi.core.version}</version>
	<scope>provided</scope>
	</dependency>
	<dependency>
	<groupId>org.osgi</groupId>
	<artifactId>org.osgi.compendium</artifactId>
	<version>${osgi.core.version}</version>
	<scope>provided</scope>
	</dependency>

	<!-- Invalid manifest header Import-Package: "com.sun.jdmk.comm;resolution:="optional"" : Cannot import a package more than once "com.sun.jdmk.comm"-->
	<dependency>
	<groupId>log4j</groupId>
	<artifactId>log4j</artifactId>
	<version>${log4j.version}</version>
	<scope>provided</scope>
	</dependency>

	<!-- Spring DM -->
	<dependency>
	<groupId>net.sourceforge.cglib</groupId>
	<artifactId>com.springsource.net.sf.cglib</artifactId>
	<version>${cglib.version}</version>
	</dependency>
	<dependency>
	<groupId>org.springframework.osgi</groupId>
	<artifactId>spring-osgi-annotation</artifactId>
	<version>${spring.dm.version}</version>
	</dependency>
	<dependency>
	<groupId>org.springframework.osgi</groupId>
	<artifactId>spring-osgi-extender</artifactId>
	<version>${spring.dm.version}</version>
	</dependency>
	<!-- Spring -->
	<dependency>
	<groupId>org.springframework</groupId>
	<artifactId>org.springframework.context</artifactId>
	<version>${spring.version}</version>
	</dependency>

	<!-- Java Extension Implementations -->
	<!-- Appears unrequired dependency>
	<groupId>javax.xml.bind</groupId>
	<artifactId>com.springsource.javax.xml.bind</artifactId>
	<version>2.2.0</version>
	</dependency-->
	<dependency>
	<groupId>javax.activation</groupId>
	<artifactId>com.springsource.javax.activation</artifactId>
	<version>${activation.version}</version>
	</dependency>
	<!-- The bundle "com.springsource.bsh_2.0.0.b4 " could not be resolved. Reason: Missing Constraint: Import-Package: javax.servlet; version="[2.5.0,3.0.0)" -->
	<dependency>
	<groupId>javax.servlet</groupId>
	<artifactId>com.springsource.javax.servlet</artifactId>
	<version>2.5.0</version>
	</dependency>
	<!-- The bundle "com.springsource.org.apache.axis_1.4.0 " could not be resolved. Reason: Missing Constraint: Import-Package: javax.jms; version="[1.1.0,2.0.0)" -->
	<dependency>
	<groupId>javax.jms</groupId>
	<artifactId>com.springsource.javax.jms</artifactId>
	<version>1.1.0</version>
	</dependency>
	<!-- The bundle "com.springsource.javax.xml.rpc_1.1.0 " could not be resolved. Reason: Missing Constraint: Import-Package: javax.xml.soap; version="[1.3.0,2.0.0)" -->
	<dependency>
	<groupId>javax.xml.soap</groupId>
	<artifactId>com.springsource.javax.xml.soap</artifactId>
	<version>1.3.0</version>
	</dependency>
	<!-- The bundle "com.springsource.com.thoughtworks.xstream_1.4.1" could not be resolved. Reason: Missing Constraint: Import-Package: javax.xml.stream; version="[1.0.1,2.0.0)" -->
	<dependency>
	<groupId>javax.xml.stream</groupId>
	<artifactId>com.springsource.javax.xml.stream</artifactId>
	<version>1.0.1</version>
	</dependency>
	<dependency>
	<groupId>javax.mail</groupId>
	<artifactId>com.springsource.javax.mail</artifactId>
	<version>${mail.version}</version>
	</dependency>
	<dependency>
	<groupId>commons-codec</groupId>
	<artifactId>commons-codec</artifactId>
	<version>${commons.codec.version}</version>
	</dependency>
	<dependency>
	<groupId>commons-configuration</groupId>
	<artifactId>commons-configuration</artifactId>
	<version>1.10</version>
	</dependency>
	<dependency>
	<groupId>com.sun.xml.bind</groupId>
	<artifactId>jaxb-impl</artifactId>
	<version>2.2.11</version>
	</dependency>


	<!-- OSGi Enterprise Services -->
	<dependency>
	<groupId>uk.org.taverna.osgi.services</groupId>
	<artifactId>xml-parser-service</artifactId>
	<version>${osgi.services.version}</version>
	</dependency>
	<dependency>
	<groupId>uk.org.taverna.osgi.services</groupId>
	<artifactId>xml-transformer-service</artifactId>
	<version>${osgi.services.version}</version>
	</dependency>
	<!-- The bundle "uk.org.taverna.commons.taverna-plugin-impl_0.1.0.SNAPSHOT" could not be resolved. Reason: Missing Constraint: Import-Package: org.osgi.service.event; version="[1.3.0,2.0.0)" -->
	<dependency>
	<groupId>org.apache.felix</groupId>
	<artifactId>org.apache.felix.eventadmin</artifactId>
	<version>1.3.2</version>
	</dependency>
	<!-- Appears unrequired dependency>
	<groupId>org.apache.felix</groupId>
	<artifactId>org.apache.felix.configadmin</artifactId>
	<version>1.6.0</version>
	</dependency-->

	<!-- Taverna Activities -->
	<dependency>
	<groupId>net.sf.taverna.t2.activities</groupId>
	<artifactId>apiconsumer-activity</artifactId>
	<version>2.0.1-SNAPSHOT</version>
	</dependency>
	<dependency>
	<groupId>net.sf.taverna.t2.activities</groupId>
	<artifactId>beanshell-activity</artifactId>
	<version>2.0.1-SNAPSHOT</version>
	</dependency>
	<dependency>
	<groupId>net.sf.taverna.t2.activities</groupId>
	<artifactId>biomart-activity</artifactId>
	<version>2.0.1-SNAPSHOT</version>
	</dependency>
	<dependency>
	<groupId>net.sf.taverna.t2.activities</groupId>
	<artifactId>dataflow-activity</artifactId>
	<version>2.0.1-SNAPSHOT</version>
	</dependency>
	<!-- <dependency> <groupId>net.sf.taverna.t2.activities</groupId> <artifactId>external-tool-activity</artifactId>
	<version>2.0.1-SNAPSHOT</version> </dependency> -->
	<dependency>
	<groupId>net.sf.taverna.t2.activities</groupId>
	<artifactId>localworker-activity</artifactId>
	<version>2.0.1-SNAPSHOT</version>
	</dependency>
	<dependency>
	<groupId>net.sf.taverna.t2.activities</groupId>
	<artifactId>rest-activity</artifactId>
	<version>2.0.1-SNAPSHOT</version>
	</dependency>
	<dependency>
	<groupId>net.sf.taverna.t2.activities</groupId>
	<artifactId>rshell-activity</artifactId>
	<version>2.0.1-SNAPSHOT</version>
	</dependency>
	<dependency>
	<groupId>net.sf.taverna.t2.activities</groupId>
	<artifactId>soaplab-activity</artifactId>
	<version>2.0.1-SNAPSHOT</version>
	</dependency>
	<dependency>
	<groupId>net.sf.taverna.t2.activities</groupId>
	<artifactId>spreadsheet-import-activity</artifactId>
	<version>2.0.1-SNAPSHOT</version>
	</dependency>
	<dependency>
	<groupId>net.sf.taverna.t2.activities</groupId>
	<artifactId>stringconstant-activity</artifactId>
	<version>2.0.1-SNAPSHOT</version>
	</dependency>
	<dependency>
	<groupId>net.sf.taverna.t2.activities</groupId>
	<artifactId>wsdl-activity</artifactId>
	<version>2.0.1-SNAPSHOT</version>
	</dependency>
	<dependency>
	<groupId>net.sf.taverna.t2.activities</groupId>
	<artifactId>xpath-activity</artifactId>
	<version>2.0.1-SNAPSHOT</version>
	</dependency>

	<!-- Taverna Commandline -->
	<dependency>
	<groupId>net.sf.taverna.t2.taverna-commandline</groupId>
	<artifactId>taverna-commandline-common</artifactId>
	<version>${t2.taverna-commandline.version}</version>
	</dependency>
	<dependency>
	<groupId>uk.org.taverna.commandline</groupId>
	<artifactId>taverna-command-line</artifactId>
	<version>${taverna-command-line.version}</version>
	</dependency>

	<!-- Taverna Platform -->
	<dependency>
	<groupId>uk.org.taverna.platform</groupId>
	<artifactId>taverna-capability-impl</artifactId>
	<version>${platform.version}</version>
	</dependency>
	<dependency>
	<groupId>uk.org.taverna.platform</groupId>
	<artifactId>taverna-run-impl</artifactId>
	<version>${platform.version}</version>
	</dependency>
	<dependency>
	<groupId>uk.org.taverna.platform</groupId>
	<artifactId>taverna-execution-impl</artifactId>
	<version>${platform.version}</version>
	</dependency>
	<dependency>
	<groupId>uk.org.taverna.platform</groupId>
	<artifactId>taverna-execution-local</artifactId>
	<version>${platform.version}</version>
	</dependency>

	<!-- Taverna Commons -->
	<dependency>
	<groupId>uk.org.taverna.configuration</groupId>
	<artifactId>taverna-configuration-impl</artifactId>
	<version>0.1.1-SNAPSHOT</version>
	</dependency>
	<dependency>
	<groupId>uk.org.taverna.configuration</groupId>
	<artifactId>taverna-app-configuration-impl</artifactId>
	<version>0.1.1-SNAPSHOT</version>
	</dependency>
	<dependency>
	<groupId>uk.org.taverna.configuration</groupId>
	<artifactId>taverna-database-configuration-impl</artifactId>
	<version>0.1.1-SNAPSHOT</version>
	</dependency>
	<dependency>
	<groupId>uk.org.taverna.commons</groupId>
	<artifactId>taverna-download-impl</artifactId>
	<version>0.1.0-SNAPSHOT</version>
	</dependency>
	<dependency>
	<groupId>uk.org.taverna.commons</groupId>
	<artifactId>taverna-plugin-impl</artifactId>
	<version>0.1.0-SNAPSHOT</version>
	</dependency>
	<dependency>
	<groupId>uk.org.taverna.commons</groupId>
	<artifactId>taverna-services-impl</artifactId>
	<version>0.1.0-SNAPSHOT</version>
	</dependency>
	<dependency>
	<groupId>uk.org.taverna.commons</groupId>
	<artifactId>taverna-update-impl</artifactId>
	<version>0.1.0-SNAPSHOT</version>
	</dependency>

	<!-- Scufl2 -->
	<dependency>
	<groupId>uk.org.taverna.scufl2</groupId>
	<artifactId>scufl2-rdfxml</artifactId>
	<version>${scufl2.version}</version>
	</dependency>
	<dependency>
	<groupId>uk.org.taverna.scufl2</groupId>
	<artifactId>scufl2-t2flow</artifactId>
	<version>${scufl2.version}</version>
	</dependency>
	<dependency>
	<groupId>uk.org.taverna.scufl2</groupId>
	<artifactId>scufl2-validation-structural</artifactId>
	<version>${scufl2.version}</version>
	</dependency>
	<dependency>
	<groupId>uk.org.taverna.scufl2</groupId>
	<artifactId>scufl2-validation-correctness</artifactId>
	<version>${scufl2.version}</version>
	</dependency>

	<!-- Data bundle -->
	<dependency>
	<groupId>uk.org.taverna.databundle</groupId>
	<artifactId>databundle</artifactId>
	<version>${taverna.databundle.version}</version>
	</dependency>
	<!-- HTTP client needed by Data Bundle -->
	<!-- Appears unrequired dependency>
	<groupId>org.apache.httpcomponents</groupId>
	<artifactId>httpclient-osgi</artifactId>
	<version>4.2.5</version>
	</dependency-->
	<!-- Appears unrequired dependency>
	<groupId>org.apache.httpcomponents</groupId>
	<artifactId>httpcore-osgi</artifactId>
	<version>4.2.5</version>
	</dependency-->
	<!-- Jena bundle needed by jsonld-java-jena -->
	<!-- See https://github.com/stain/jena/tree/jena-bundle/jena-bundle -->
	<dependency>
	<groupId>org.apache.jena</groupId>
	<artifactId>jena-bundle</artifactId>
	<version>2.12.2-SNAPSHOT</version>
	</dependency>
	<!-- slf4j implementation -->
	<!-- The bundle "org.purl.wf4ever.robundle_0.3.1 " could not be resolved. Reason: Missing Constraint: Import-Package: org.slf4j; version="[1.7.0,2.0.0)"-->
	<dependency>
	<groupId>org.slf4j</groupId>
	<artifactId>slf4j-api</artifactId>
	<version>1.7.5</version>
	</dependency>
	<!-- Appears unrequired dependency>
	<groupId>org.slf4j</groupId>
	<artifactId>slf4j-log4j12</artifactId>
	<version>1.7.5</version>
	</dependency-->

	<!-- Taverna Security -->
	<dependency>
	<groupId>net.sf.taverna.t2.security</groupId>
	<artifactId>credential-manager-impl</artifactId>
	<version>${t2.security.version}</version>
	</dependency>

	<!-- Taverna Workflow Engine -->
	<dependency>
	<groupId>net.sf.taverna.t2.core</groupId>
	<artifactId>workflowmodel-impl</artifactId>
	<version>${t2.core.version}</version>
	</dependency>
	<dependency>
	<groupId>net.sf.taverna.t2.core</groupId>
	<artifactId>workflowmodel-core-extensions</artifactId>
	<version>${t2.core.version}</version>
	</dependency>
	<dependency>
	<groupId>net.sf.taverna.t2.core</groupId>
	<artifactId>reference-impl</artifactId>
	<version>${t2.core.version}</version>
	</dependency>
	<dependency>
	<groupId>net.sf.taverna.t2.core</groupId>
	<artifactId>reference-core-extensions</artifactId>
	<version>${t2.core.version}</version>
	</dependency>

	<!-- Taverna Provenance -->
	<!--dependency>
	<groupId>net.sf.taverna.t2.core</groupId>
	<artifactId>provenance-derby</artifactId>
	<version>${t2.core.provenance.derby.version}</version>
	</dependency>
	<dependency>
	<groupId>net.sf.taverna.t2.core</groupId>
	<artifactId>provenance-mysql</artifactId>
	<version>${t2.core.provenance.mysql.version}</version>
	</dependency-->
	<!-- The bundle "org.purl.wf4ever.robundle_0.3.1 " could not be resolved. Reason: Missing Constraint: Import-Package: com.fasterxml.jackson.annotation; version="[2.3.0,3.0.0)"-->
	<dependency>
	<groupId>com.fasterxml.jackson.core</groupId>
	<artifactId>jackson-core</artifactId>
	<version>2.3.0</version>
	</dependency>
	<dependency>
	<groupId>com.fasterxml.jackson.core</groupId>
	<artifactId>jackson-annotations</artifactId>
	<version>2.3.0</version>
	</dependency>
	<dependency>
	<groupId>com.fasterxml.jackson.core</groupId>
	<artifactId>jackson-databind</artifactId>
	<version>2.3.0</version>
	</dependency>
	</dependencies>

	<repositories>
	<repository>
	<releases />
	<snapshots>
	<enabled>false</enabled>
	</snapshots>
	<id>mygrid-repository</id>
	<name>myGrid Repository</name>
	<url>http://www.mygrid.org.uk/maven/repository</url>
	</repository>
	<repository>
	<releases>
	<enabled>false</enabled>
	</releases>
	<snapshots />
	<id>mygrid-snapshot-repository</id>
	<name>myGrid Snapshot Repository</name>
	<url>http://www.mygrid.org.uk/maven/snapshot-repository</url>
	</repository>
	<repository>
	<id>spring-maven-milestone</id>
	<name>Springframework Maven Repository</name>
	<url>http://maven.springframework.org/milestone</url>
	</repository>
	<repository>
	<id>com.springsource.repository.bundles.milestone</id>
	<name>SpringSource Enterprise Bundle Repository - SpringSource Bundle Milestones</name>
	<url>http://repository.springsource.com/maven/bundles/milestone</url>
	</repository>
	<repository>
	<id>OPS4J</id>
	<url>http://repository.ops4j.org/maven2</url>
	</repository>
	</repositories>

	<scm>
	<connection>scm:svn:http://taverna.googlecode.com/svn/taverna/products/net.sf.taverna.t2.taverna-commandline/trunk/</connection>
	<developerConnection>scm:svn:https://taverna.googlecode.com/svn/taverna/products/net.sf.taverna.t2.taverna-commandline/trunk/</developerConnection>
	<url>http://code.google.com/p/taverna/source/browse/#svn/taverna/products/net.sf.taverna.t2.taverna-commandline/trunk/</url>
	</scm>
	</project>