/*
 * Licensed to the Apache Software Foundation (ASF) under one or more
 * contributor license agreements.  See the NOTICE file distributed with
 * this work for additional information regarding copyright ownership.
 * The ASF licenses this file to You under the Apache License, Version 2.0
 * (the "License"); you may not use this file except in compliance with
 * the License.  You may obtain a copy of the License at
 *
 *      http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 */

package org.apache.ignite.ml.genetic;

import java.util.Arrays;
import java.util.concurrent.atomic.AtomicLong;
import org.apache.ignite.cache.query.annotations.QuerySqlField;

/**
 * Represents a potential solution consisting of a fixed-length collection of genes. <br/>
 *
 * <p>
 *
 * NOTE: Chromosome resides in cache: GAGridConstants.POPULATION_CACHE. This cached is partitioned.
 *
 * </p>
 */
public class Chromosome {
    /** primary key of Chromosome */
    private static final AtomicLong ID_GEN = new AtomicLong();

    /** fitness score */
    @QuerySqlField(index = true)
    private double fitnessScore = -1;

    /** Id (indexed). */
    @QuerySqlField(index = true)
    private Long id;

    /** array of gene keys. */
    private long[] genes;

    /**
     * @param genes Primary keys of Genes
     */
    public Chromosome(long[] genes) {
        id = ID_GEN.incrementAndGet();
        this.genes = genes;
    }

    /**
     * Gets the fitnessScore
     *
     * @return This chromosome's fitness score
     */
    public double getFitnessScore() {
        return fitnessScore;
    }

    /**
     * Set the fitnessScore for this chromosome
     *
     * @param fitnessScore This chromosome's new fitness score
     */
    public void setFitnessScore(double fitnessScore) {
        this.fitnessScore = fitnessScore;
    }

    /**
     * Gets the gene keys (ie: primary keys) for this chromosome
     *
     * @return This chromosome's genes
     */
    public long[] getGenes() {
        return genes;
    }

    /**
     * Set the gene keys (ie: primary keys)
     *
     * @param genes This chromosome's new genes
     */
    public void setGenes(long[] genes) {
        this.genes = genes;
    }

    /**
     * Get the id (primary key) for this chromosome
     *
     * @return This chromosome's primary key
     */
    public Long id() {
        return id;
    }

    /** {@inheritDoc} */
    @Override public String toString() {
        return "Chromosome [fitnessScore=" + fitnessScore + ", id=" + id + ", genes=" + Arrays.toString(genes) + "]";
    }

}